data_9GY8
#
_model_server_result.job_id            pFgEXgW_UtQ-i-yaejOd5w 
_model_server_result.datetime_utc      '2024-12-16 02:35:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gy8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    9GY8 
#
_exptl.entry_id    9GY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              430.738 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-5-trimethylsilylpentan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GY8 
_cell.length_a            65.457 
_cell.length_b            65.457 
_cell.length_c            262.257 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.7285 56.687425 -43.7095 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H46 O2 Si' 
_chem_comp.formula_weight    430.738 
_chem_comp.id                A1IQM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-5-trimethylsilylpentan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 SI27 A1IQM sing 1 n n 
C29 SI27 A1IQM sing 2 n n 
C30 SI27 A1IQM sing 3 n n 
SI27 C26 A1IQM sing 4 n n 
C26 C25 A1IQM sing 5 n n 
C25 C24 A1IQM sing 6 n n 
C21 C5 A1IQM sing 7 n n 
C24 C22 A1IQM sing 8 n n 
C1 C6 A1IQM sing 9 n n 
C1 C2 A1IQM sing 10 n n 
C18 C17 A1IQM doub 11 n n 
C6 C5 A1IQM sing 12 n n 
C22 C9 A1IQM sing 13 n n 
C22 C23 A1IQM sing 14 n n 
C5 C9 A1IQM sing 15 n n 
C5 C4 A1IQM sing 16 n n 
O19 C16 A1IQM sing 17 n n 
C17 C12 A1IQM sing 18 n n 
C17 C16 A1IQM sing 19 n n 
C13 C12 A1IQM sing 20 n n 
C13 C14 A1IQM sing 21 n n 
C15 C16 A1IQM sing 22 n n 
C15 C14 A1IQM sing 23 n n 
C12 C11 A1IQM doub 24 z n 
C2 C3 A1IQM sing 25 n n 
C11 C10 A1IQM sing 26 n n 
C9 C8 A1IQM sing 27 n n 
C14 O20 A1IQM sing 28 n n 
C10 C3 A1IQM doub 29 e n 
C3 C4 A1IQM sing 30 n n 
C4 C7 A1IQM sing 31 n n 
C8 C7 A1IQM sing 32 n n 
C7 H1 A1IQM sing 33 n n 
C7 H2 A1IQM sing 34 n n 
C8 H3 A1IQM sing 35 n n 
C8 H4 A1IQM sing 36 n n 
C9 H5 A1IQM sing 37 n n 
C1 H6 A1IQM sing 38 n n 
C1 H7 A1IQM sing 39 n n 
C6 H8 A1IQM sing 40 n n 
C6 H9 A1IQM sing 41 n n 
C4 H10 A1IQM sing 42 n n 
C2 H11 A1IQM sing 43 n n 
C2 H12 A1IQM sing 44 n n 
C10 H13 A1IQM sing 45 n n 
C11 H14 A1IQM sing 46 n n 
C13 H15 A1IQM sing 47 n n 
C13 H16 A1IQM sing 48 n n 
C14 H17 A1IQM sing 49 n n 
C15 H18 A1IQM sing 50 n n 
C15 H19 A1IQM sing 51 n n 
C16 H20 A1IQM sing 52 n n 
C18 H21 A1IQM sing 53 n n 
C18 H22 A1IQM sing 54 n n 
C21 H23 A1IQM sing 55 n n 
C21 H24 A1IQM sing 56 n n 
C21 H25 A1IQM sing 57 n n 
C22 H26 A1IQM sing 58 n n 
C23 H27 A1IQM sing 59 n n 
C23 H28 A1IQM sing 60 n n 
C23 H29 A1IQM sing 61 n n 
C24 H30 A1IQM sing 62 n n 
C24 H31 A1IQM sing 63 n n 
C25 H32 A1IQM sing 64 n n 
C25 H33 A1IQM sing 65 n n 
C26 H34 A1IQM sing 66 n n 
C26 H35 A1IQM sing 67 n n 
C28 H36 A1IQM sing 68 n n 
C28 H37 A1IQM sing 69 n n 
C28 H38 A1IQM sing 70 n n 
C29 H39 A1IQM sing 71 n n 
C29 H40 A1IQM sing 72 n n 
C29 H41 A1IQM sing 73 n n 
C30 H42 A1IQM sing 74 n n 
C30 H43 A1IQM sing 75 n n 
C30 H44 A1IQM sing 76 n n 
O19 H45 A1IQM sing 77 n n 
O20 H46 A1IQM sing 78 n n 
#
_atom_sites.entry_id                     9GY8 
_atom_sites.fract_transf_matrix[1][1]    0.015277 
_atom_sites.fract_transf_matrix[1][2]    0.00882 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003813 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 A1IQM A 1 501 1 A1IQM XXX . 
D 4 HOH A 1 601 43 HOH HOH . 
D 4 HOH A 2 602 22 HOH HOH . 
D 4 HOH A 3 603 57 HOH HOH . 
D 4 HOH A 4 604 52 HOH HOH . 
D 4 HOH A 5 605 42 HOH HOH . 
D 4 HOH A 6 606 65 HOH HOH . 
D 4 HOH A 7 607 61 HOH HOH . 
D 4 HOH A 8 608 9 HOH HOH . 
D 4 HOH A 9 609 28 HOH HOH . 
D 4 HOH A 10 610 45 HOH HOH . 
D 4 HOH A 11 611 17 HOH HOH . 
D 4 HOH A 12 612 13 HOH HOH . 
D 4 HOH A 13 613 26 HOH HOH . 
D 4 HOH A 14 614 4 HOH HOH . 
D 4 HOH A 15 615 59 HOH HOH . 
D 4 HOH A 16 616 67 HOH HOH . 
D 4 HOH A 17 617 50 HOH HOH . 
D 4 HOH A 18 618 33 HOH HOH . 
D 4 HOH A 19 619 31 HOH HOH . 
D 4 HOH A 20 620 7 HOH HOH . 
D 4 HOH A 21 621 32 HOH HOH . 
D 4 HOH A 22 622 60 HOH HOH . 
D 4 HOH A 23 623 2 HOH HOH . 
D 4 HOH A 24 624 41 HOH HOH . 
D 4 HOH A 25 625 27 HOH HOH . 
D 4 HOH A 26 626 56 HOH HOH . 
D 4 HOH A 27 627 8 HOH HOH . 
D 4 HOH A 28 628 10 HOH HOH . 
D 4 HOH A 29 629 14 HOH HOH . 
D 4 HOH A 30 630 46 HOH HOH . 
D 4 HOH A 31 631 39 HOH HOH . 
D 4 HOH A 32 632 37 HOH HOH . 
D 4 HOH A 33 633 11 HOH HOH . 
D 4 HOH A 34 634 16 HOH HOH . 
D 4 HOH A 35 635 55 HOH HOH . 
D 4 HOH A 36 636 47 HOH HOH . 
D 4 HOH A 37 637 5 HOH HOH . 
D 4 HOH A 38 638 64 HOH HOH . 
D 4 HOH A 39 639 12 HOH HOH . 
D 4 HOH A 40 640 38 HOH HOH . 
D 4 HOH A 41 641 1 HOH HOH . 
D 4 HOH A 42 642 34 HOH HOH . 
D 4 HOH A 43 643 51 HOH HOH . 
D 4 HOH A 44 644 49 HOH HOH . 
D 4 HOH A 45 645 18 HOH HOH . 
D 4 HOH A 46 646 19 HOH HOH . 
D 4 HOH A 47 647 15 HOH HOH . 
D 4 HOH A 48 648 30 HOH HOH . 
D 4 HOH A 49 649 6 HOH HOH . 
D 4 HOH A 50 650 35 HOH HOH . 
D 4 HOH A 51 651 29 HOH HOH . 
D 4 HOH A 52 652 62 HOH HOH . 
D 4 HOH A 53 653 53 HOH HOH . 
D 4 HOH A 54 654 20 HOH HOH . 
D 4 HOH A 55 655 54 HOH HOH . 
D 4 HOH A 56 656 36 HOH HOH . 
D 4 HOH A 57 657 23 HOH HOH . 
D 4 HOH A 58 658 40 HOH HOH . 
D 4 HOH A 59 659 58 HOH HOH . 
D 4 HOH A 60 660 25 HOH HOH . 
E 4 HOH B 1 701 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 A1IQM . . . C 3 -28.682 18.206 -4.021 1 64.16 ? C7 A1IQM 501 A 1 
HETATM 2 C C8 A1IQM . . . C 3 -27.194 17.932 -4.368 1 60.27 ? C8 A1IQM 501 A 1 
HETATM 3 C C9 A1IQM . . . C 3 -27.192 16.581 -5.118 1 47.99 ? C9 A1IQM 501 A 1 
HETATM 4 C C1 A1IQM . . . C 3 -30.637 15.096 -6.423 1 59.4 ? C1 A1IQM 501 A 1 
HETATM 5 C C5 A1IQM . . . C 3 -28.596 16.508 -5.772 1 64.63 ? C5 A1IQM 501 A 1 
HETATM 6 C C6 A1IQM . . . C 3 -29.133 15.11 -6.13 1 55.41 ? C6 A1IQM 501 A 1 
HETATM 7 C C4 A1IQM . . . C 3 -29.458 16.997 -4.579 1 58.55 ? C4 A1IQM 501 A 1 
HETATM 8 C C3 A1IQM . . . C 3 -30.925 17.061 -4.934 1 51.2 ? C3 A1IQM 501 A 1 
HETATM 9 C C2 A1IQM . . . C 3 -31.464 15.716 -5.29 1 61.27 ? C2 A1IQM 501 A 1 
HETATM 10 C C10 A1IQM . . . C 3 -31.622 18.227 -4.983 1 45.36 ? C10 A1IQM 501 A 1 
HETATM 11 C C11 A1IQM . . . C 3 -33.018 18.326 -5.254 1 48.84 ? C11 A1IQM 501 A 1 
HETATM 12 C C12 A1IQM . . . C 3 -33.737 19.462 -5.441 1 49.72 ? C12 A1IQM 501 A 1 
HETATM 13 C C13 A1IQM . . . C 3 -35.23 19.403 -5.641 1 51.63 ? C13 A1IQM 501 A 1 
HETATM 14 C C14 A1IQM . . . C 3 -35.947 20.604 -5.06 1 57.93 ? C14 A1IQM 501 A 1 
HETATM 15 C C15 A1IQM . . . C 3 -35.341 21.873 -5.618 1 51.47 ? C15 A1IQM 501 A 1 
HETATM 16 C C16 A1IQM . . . C 3 -33.881 21.978 -5.215 1 61.04 ? C16 A1IQM 501 A 1 
HETATM 17 C C17 A1IQM . . . C 3 -33.111 20.771 -5.69 1 56.69 ? C17 A1IQM 501 A 1 
HETATM 18 C C18 A1IQM . . . C 3 -31.972 20.931 -6.339 1 66.71 ? C18 A1IQM 501 A 1 
HETATM 19 C C21 A1IQM . . . C 3 -28.772 17.478 -6.954 1 68.54 ? C21 A1IQM 501 A 1 
HETATM 20 C C22 A1IQM . . . C 3 -25.914 16.356 -5.954 1 66.45 ? C22 A1IQM 501 A 1 
HETATM 21 C C23 A1IQM . . . C 3 -24.755 15.829 -5.112 1 66.62 ? C23 A1IQM 501 A 1 
HETATM 22 C C24 A1IQM . . . C 3 -25.467 17.599 -6.759 1 71.31 ? C24 A1IQM 501 A 1 
HETATM 23 C C25 A1IQM . . . C 3 -24.851 17.286 -8.137 1 70.57 ? C25 A1IQM 501 A 1 
HETATM 24 C C26 A1IQM . . . C 3 -24.475 18.505 -9.01 1 75.17 ? C26 A1IQM 501 A 1 
HETATM 25 C C28 A1IQM . . . C 3 -23.649 19.651 -11.736 1 59.83 ? C28 A1IQM 501 A 1 
HETATM 26 C C29 A1IQM . . . C 3 -25.43 17.198 -11.601 1 71.45 ? C29 A1IQM 501 A 1 
HETATM 27 C C30 A1IQM . . . C 3 -22.494 17.006 -10.809 1 49.92 ? C30 A1IQM 501 A 1 
HETATM 28 O O19 A1IQM . . . C 3 -33.3 23.17 -5.744 1 63.52 ? O19 A1IQM 501 A 1 
HETATM 29 O O20 A1IQM . . . C 3 -35.792 20.599 -3.642 1 75.59 ? O20 A1IQM 501 A 1 
HETATM 30 SI SI27 A1IQM . . . C 3 -24.008 18.085 -10.79 1 65.73 ? SI27 A1IQM 501 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           30 
#