data_9GYC # _model_server_result.job_id QS2xbpsvA3JlsMpVtRTMUQ _model_server_result.datetime_utc '2024-12-15 23:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 9GYC # _exptl.entry_id 9GYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.786 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R})-5-[~{tert}-butyl(dimethyl)silyl]pent-4-yn-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9GYC _cell.length_a 65.914 _cell.length_b 65.914 _cell.length_c 262.944 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H48 O2 Si' _chem_comp.formula_weight 468.786 _chem_comp.id A1IQP _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-1-[(2~{R})-5-[~{tert}-butyl(dimethyl)silyl]pent-4-yn-2-yl]-7~{a}-methyl-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C31 C28 A1IQP sing 1 n n C32 C28 A1IQP sing 2 n n C33 C28 A1IQP sing 3 n n C28 SI27 A1IQP sing 4 n n C30 SI27 A1IQP sing 5 n n SI27 C29 A1IQP sing 6 n n SI27 C26 A1IQP sing 7 n n C26 C25 A1IQP trip 8 n n C25 C24 A1IQP sing 9 n n C21 C5 A1IQP sing 10 n n C1 C6 A1IQP sing 11 n n C1 C2 A1IQP sing 12 n n C18 C17 A1IQP doub 13 n n C24 C22 A1IQP sing 14 n n C6 C5 A1IQP sing 15 n n C22 C23 A1IQP sing 16 n n C22 C9 A1IQP sing 17 n n C5 C9 A1IQP sing 18 n n C5 C4 A1IQP sing 19 n n C17 C12 A1IQP sing 20 n n C17 C16 A1IQP sing 21 n n O19 C16 A1IQP sing 22 n n C13 C12 A1IQP sing 23 n n C13 C14 A1IQP sing 24 n n C15 C16 A1IQP sing 25 n n C15 C14 A1IQP sing 26 n n C12 C11 A1IQP doub 27 z n C2 C3 A1IQP sing 28 n n C14 O20 A1IQP sing 29 n n C9 C8 A1IQP sing 30 n n C11 C10 A1IQP sing 31 n n C3 C10 A1IQP doub 32 e n C3 C4 A1IQP sing 33 n n C4 C7 A1IQP sing 34 n n C8 C7 A1IQP sing 35 n n C7 H1 A1IQP sing 36 n n C7 H2 A1IQP sing 37 n n C8 H3 A1IQP sing 38 n n C8 H4 A1IQP sing 39 n n C9 H5 A1IQP sing 40 n n C1 H6 A1IQP sing 41 n n C1 H7 A1IQP sing 42 n n C6 H8 A1IQP sing 43 n n C6 H9 A1IQP sing 44 n n C4 H10 A1IQP sing 45 n n C2 H11 A1IQP sing 46 n n C2 H12 A1IQP sing 47 n n C10 H13 A1IQP sing 48 n n C11 H14 A1IQP sing 49 n n C13 H15 A1IQP sing 50 n n C13 H16 A1IQP sing 51 n n C14 H17 A1IQP sing 52 n n C15 H18 A1IQP sing 53 n n C15 H19 A1IQP sing 54 n n C16 H20 A1IQP sing 55 n n C18 H21 A1IQP sing 56 n n C18 H22 A1IQP sing 57 n n C21 H23 A1IQP sing 58 n n C21 H24 A1IQP sing 59 n n C21 H25 A1IQP sing 60 n n C22 H26 A1IQP sing 61 n n C23 H27 A1IQP sing 62 n n C23 H28 A1IQP sing 63 n n C23 H29 A1IQP sing 64 n n C24 H30 A1IQP sing 65 n n C24 H31 A1IQP sing 66 n n C29 H32 A1IQP sing 67 n n C29 H33 A1IQP sing 68 n n C29 H34 A1IQP sing 69 n n C30 H35 A1IQP sing 70 n n C30 H36 A1IQP sing 71 n n C30 H37 A1IQP sing 72 n n C31 H38 A1IQP sing 73 n n C31 H39 A1IQP sing 74 n n C31 H40 A1IQP sing 75 n n C32 H41 A1IQP sing 76 n n C32 H42 A1IQP sing 77 n n C32 H43 A1IQP sing 78 n n C33 H44 A1IQP sing 79 n n C33 H45 A1IQP sing 80 n n C33 H46 A1IQP sing 81 n n O19 H47 A1IQP sing 82 n n O20 H48 A1IQP sing 83 n n # _atom_sites.entry_id 9GYC _atom_sites.fract_transf_matrix[1][1] 0.015171 _atom_sites.fract_transf_matrix[1][2] 0.008759 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 501 502 ACT ACT . D 4 A1IQP A 1 502 1 A1IQP XXX . E 5 HOH A 1 601 15 HOH HOH . E 5 HOH A 2 602 24 HOH HOH . E 5 HOH A 3 603 30 HOH HOH . E 5 HOH A 4 604 35 HOH HOH . E 5 HOH A 5 605 20 HOH HOH . E 5 HOH A 6 606 18 HOH HOH . E 5 HOH A 7 607 42 HOH HOH . E 5 HOH A 8 608 52 HOH HOH . E 5 HOH A 9 609 16 HOH HOH . E 5 HOH A 10 610 1 HOH HOH . E 5 HOH A 11 611 14 HOH HOH . E 5 HOH A 12 612 21 HOH HOH . E 5 HOH A 13 613 50 HOH HOH . E 5 HOH A 14 614 4 HOH HOH . E 5 HOH A 15 615 17 HOH HOH . E 5 HOH A 16 616 46 HOH HOH . E 5 HOH A 17 617 12 HOH HOH . E 5 HOH A 18 618 39 HOH HOH . E 5 HOH A 19 619 25 HOH HOH . E 5 HOH A 20 620 2 HOH HOH . E 5 HOH A 21 621 36 HOH HOH . E 5 HOH A 22 622 45 HOH HOH . E 5 HOH A 23 623 44 HOH HOH . E 5 HOH A 24 624 40 HOH HOH . E 5 HOH A 25 625 29 HOH HOH . E 5 HOH A 26 626 9 HOH HOH . E 5 HOH A 27 627 5 HOH HOH . E 5 HOH A 28 628 23 HOH HOH . E 5 HOH A 29 629 6 HOH HOH . E 5 HOH A 30 630 37 HOH HOH . E 5 HOH A 31 631 22 HOH HOH . E 5 HOH A 32 632 3 HOH HOH . E 5 HOH A 33 633 31 HOH HOH . E 5 HOH A 34 634 10 HOH HOH . E 5 HOH A 35 635 32 HOH HOH . E 5 HOH A 36 636 8 HOH HOH . E 5 HOH A 37 637 33 HOH HOH . E 5 HOH A 38 638 19 HOH HOH . E 5 HOH A 39 639 43 HOH HOH . E 5 HOH A 40 640 49 HOH HOH . E 5 HOH A 41 641 7 HOH HOH . E 5 HOH A 42 642 38 HOH HOH . E 5 HOH A 43 643 28 HOH HOH . E 5 HOH A 44 644 51 HOH HOH . E 5 HOH A 45 645 41 HOH HOH . E 5 HOH A 46 646 26 HOH HOH . E 5 HOH A 47 647 34 HOH HOH . E 5 HOH A 48 648 27 HOH HOH . E 5 HOH A 49 649 47 HOH HOH . E 5 HOH A 50 650 11 HOH HOH . E 5 HOH A 51 651 48 HOH HOH . E 5 HOH A 52 652 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 A1IQP . . . D 4 -29.604 18.441 -3.839 1 44.62 ? C7 A1IQP 502 A 1 HETATM 2 C C8 A1IQP . . . D 4 -28.101 18.211 -4.191 1 47.23 ? C8 A1IQP 502 A 1 HETATM 3 C C9 A1IQP . . . D 4 -28.086 16.976 -5.138 1 51.68 ? C9 A1IQP 502 A 1 HETATM 4 C C1 A1IQP . . . D 4 -31.492 15.708 -6.669 1 47.54 ? C1 A1IQP 502 A 1 HETATM 5 C C5 A1IQP . . . D 4 -29.488 16.978 -5.784 1 44.04 ? C5 A1IQP 502 A 1 HETATM 6 C C6 A1IQP . . . D 4 -30.002 15.652 -6.357 1 38.99 ? C6 A1IQP 502 A 1 HETATM 7 C C4 A1IQP . . . D 4 -30.341 17.265 -4.518 1 41.51 ? C4 A1IQP 502 A 1 HETATM 8 C C3 A1IQP . . . D 4 -31.812 17.362 -4.835 1 41.79 ? C3 A1IQP 502 A 1 HETATM 9 C C2 A1IQP . . . D 4 -32.319 16.072 -5.425 1 51.38 ? C2 A1IQP 502 A 1 HETATM 10 C C10 A1IQP . . . D 4 -32.52 18.485 -4.705 1 42.3 ? C10 A1IQP 502 A 1 HETATM 11 C C11 A1IQP . . . D 4 -33.895 18.658 -5.044 1 41.02 ? C11 A1IQP 502 A 1 HETATM 12 C C12 A1IQP . . . D 4 -34.489 19.803 -5.435 1 40.45 ? C12 A1IQP 502 A 1 HETATM 13 C C13 A1IQP . . . D 4 -35.967 19.841 -5.715 1 45.51 ? C13 A1IQP 502 A 1 HETATM 14 C C14 A1IQP . . . D 4 -36.637 21.085 -5.152 1 51.1 ? C14 A1IQP 502 A 1 HETATM 15 C C15 A1IQP . . . D 4 -35.945 22.333 -5.67 1 38.55 ? C15 A1IQP 502 A 1 HETATM 16 C C16 A1IQP . . . D 4 -34.47 22.329 -5.295 1 42.6 ? C16 A1IQP 502 A 1 HETATM 17 C C17 A1IQP . . . D 4 -33.78 21.072 -5.777 1 45.19 ? C17 A1IQP 502 A 1 HETATM 18 C C18 A1IQP . . . D 4 -32.674 21.134 -6.51 1 43.48 ? C18 A1IQP 502 A 1 HETATM 19 C C21 A1IQP . . . D 4 -29.682 18.121 -6.805 1 41.99 ? C21 A1IQP 502 A 1 HETATM 20 C C22 A1IQP . . . D 4 -26.83 16.911 -6.027 1 62.21 ? C22 A1IQP 502 A 1 HETATM 21 C C23 A1IQP . . . D 4 -25.627 16.317 -5.311 1 66.03 ? C23 A1IQP 502 A 1 HETATM 22 C C24 A1IQP . . . D 4 -26.375 18.297 -6.475 1 71.32 ? C24 A1IQP 502 A 1 HETATM 23 C C25 A1IQP . . . D 4 -25.126 18.233 -7.234 1 82.41 ? C25 A1IQP 502 A 1 HETATM 24 C C26 A1IQP . . . D 4 -24.209 18.224 -8.008 1 87.67 ? C26 A1IQP 502 A 1 HETATM 25 C C28 A1IQP . . . D 4 -24.026 17.996 -10.97 1 62.28 ? C28 A1IQP 502 A 1 HETATM 26 C C29 A1IQP . . . D 4 -21.704 17.001 -9.197 1 87.78 ? C29 A1IQP 502 A 1 HETATM 27 C C30 A1IQP . . . D 4 -22.227 19.984 -9.448 1 96.45 ? C30 A1IQP 502 A 1 HETATM 28 C C31 A1IQP . . . D 4 -23.175 18.32 -12.209 1 68.34 ? C31 A1IQP 502 A 1 HETATM 29 C C32 A1IQP . . . D 4 -25.258 18.896 -10.988 1 61.13 ? C32 A1IQP 502 A 1 HETATM 30 C C33 A1IQP . . . D 4 -24.482 16.543 -10.981 1 54.5 ? C33 A1IQP 502 A 1 HETATM 31 O O19 A1IQP . . . D 4 -33.867 23.546 -5.775 1 43.34 ? O19 A1IQP 502 A 1 HETATM 32 O O20 A1IQP . . . D 4 -36.617 21.039 -3.711 1 54.92 ? O20 A1IQP 502 A 1 HETATM 33 SI SI27 A1IQP . . . D 4 -23.019 18.299 -9.415 1 88.31 ? SI27 A1IQP 502 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #