data_9GYJ
#
_model_server_result.job_id            O8t20YzGFABQxspYMgpK_Q 
_model_server_result.datetime_utc      '2024-12-16 01:58:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gyj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    9GYJ 
#
_exptl.entry_id    9GYJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              426.707 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-5-trimethylsilylpent-4-yn-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GYJ 
_cell.length_a            65.745 
_cell.length_b            65.745 
_cell.length_c            262.744 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GYJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.8725 56.93684 -43.790667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H42 O2 Si' 
_chem_comp.formula_weight    426.707 
_chem_comp.id                A1IQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-5-trimethylsilylpent-4-yn-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 SI27 A1IQN sing 1 n n 
C30 SI27 A1IQN sing 2 n n 
SI27 C28 A1IQN sing 3 n n 
SI27 C26 A1IQN sing 4 n n 
C26 C25 A1IQN trip 5 n n 
C25 C24 A1IQN sing 6 n n 
C21 C5 A1IQN sing 7 n n 
C18 C17 A1IQN doub 8 n n 
C24 C22 A1IQN sing 9 n n 
C1 C6 A1IQN sing 10 n n 
C1 C2 A1IQN sing 11 n n 
C6 C5 A1IQN sing 12 n n 
C22 C23 A1IQN sing 13 n n 
C22 C9 A1IQN sing 14 n n 
C15 C16 A1IQN sing 15 n n 
C15 C14 A1IQN sing 16 n n 
C13 C12 A1IQN sing 17 n n 
C13 C14 A1IQN sing 18 n n 
O19 C16 A1IQN sing 19 n n 
C17 C12 A1IQN sing 20 n n 
C17 C16 A1IQN sing 21 n n 
C5 C9 A1IQN sing 22 n n 
C5 C4 A1IQN sing 23 n n 
C12 C11 A1IQN doub 24 z n 
C14 O20 A1IQN sing 25 n n 
C2 C3 A1IQN sing 26 n n 
C11 C10 A1IQN sing 27 n n 
C9 C8 A1IQN sing 28 n n 
C3 C10 A1IQN doub 29 e n 
C3 C4 A1IQN sing 30 n n 
C4 C7 A1IQN sing 31 n n 
C8 C7 A1IQN sing 32 n n 
C7 H1 A1IQN sing 33 n n 
C7 H2 A1IQN sing 34 n n 
C8 H3 A1IQN sing 35 n n 
C8 H4 A1IQN sing 36 n n 
C9 H5 A1IQN sing 37 n n 
C1 H6 A1IQN sing 38 n n 
C1 H7 A1IQN sing 39 n n 
C6 H8 A1IQN sing 40 n n 
C6 H9 A1IQN sing 41 n n 
C4 H10 A1IQN sing 42 n n 
C2 H11 A1IQN sing 43 n n 
C2 H12 A1IQN sing 44 n n 
C10 H13 A1IQN sing 45 n n 
C11 H14 A1IQN sing 46 n n 
C13 H15 A1IQN sing 47 n n 
C13 H16 A1IQN sing 48 n n 
C14 H17 A1IQN sing 49 n n 
C15 H18 A1IQN sing 50 n n 
C15 H19 A1IQN sing 51 n n 
C16 H20 A1IQN sing 52 n n 
C18 H21 A1IQN sing 53 n n 
C18 H22 A1IQN sing 54 n n 
C21 H23 A1IQN sing 55 n n 
C21 H24 A1IQN sing 56 n n 
C21 H25 A1IQN sing 57 n n 
C22 H26 A1IQN sing 58 n n 
C23 H27 A1IQN sing 59 n n 
C23 H28 A1IQN sing 60 n n 
C23 H29 A1IQN sing 61 n n 
C24 H30 A1IQN sing 62 n n 
C24 H31 A1IQN sing 63 n n 
C28 H32 A1IQN sing 64 n n 
C28 H33 A1IQN sing 65 n n 
C28 H34 A1IQN sing 66 n n 
C29 H35 A1IQN sing 67 n n 
C29 H36 A1IQN sing 68 n n 
C29 H37 A1IQN sing 69 n n 
C30 H38 A1IQN sing 70 n n 
C30 H39 A1IQN sing 71 n n 
C30 H40 A1IQN sing 72 n n 
O19 H41 A1IQN sing 73 n n 
O20 H42 A1IQN sing 74 n n 
#
_atom_sites.entry_id                     9GYJ 
_atom_sites.fract_transf_matrix[1][1]    0.01521 
_atom_sites.fract_transf_matrix[1][2]    0.008782 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003806 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 501 502 ACT ACT . 
D 4 A1IQN A 1 502 1 A1IQN XXX . 
E 5 HOH A 1 601 113 HOH HOH . 
E 5 HOH A 2 602 121 HOH HOH . 
E 5 HOH A 3 603 28 HOH HOH . 
E 5 HOH A 4 604 123 HOH HOH . 
E 5 HOH A 5 605 8 HOH HOH . 
E 5 HOH A 6 606 103 HOH HOH . 
E 5 HOH A 7 607 124 HOH HOH . 
E 5 HOH A 8 608 63 HOH HOH . 
E 5 HOH A 9 609 75 HOH HOH . 
E 5 HOH A 10 610 114 HOH HOH . 
E 5 HOH A 11 611 110 HOH HOH . 
E 5 HOH A 12 612 20 HOH HOH . 
E 5 HOH A 13 613 77 HOH HOH . 
E 5 HOH A 14 614 12 HOH HOH . 
E 5 HOH A 15 615 100 HOH HOH . 
E 5 HOH A 16 616 80 HOH HOH . 
E 5 HOH A 17 617 118 HOH HOH . 
E 5 HOH A 18 618 9 HOH HOH . 
E 5 HOH A 19 619 93 HOH HOH . 
E 5 HOH A 20 620 7 HOH HOH . 
E 5 HOH A 21 621 66 HOH HOH . 
E 5 HOH A 22 622 101 HOH HOH . 
E 5 HOH A 23 623 33 HOH HOH . 
E 5 HOH A 24 624 29 HOH HOH . 
E 5 HOH A 25 625 106 HOH HOH . 
E 5 HOH A 26 626 127 HOH HOH . 
E 5 HOH A 27 627 3 HOH HOH . 
E 5 HOH A 28 628 2 HOH HOH . 
E 5 HOH A 29 629 105 HOH HOH . 
E 5 HOH A 30 630 14 HOH HOH . 
E 5 HOH A 31 631 32 HOH HOH . 
E 5 HOH A 32 632 10 HOH HOH . 
E 5 HOH A 33 633 107 HOH HOH . 
E 5 HOH A 34 634 13 HOH HOH . 
E 5 HOH A 35 635 81 HOH HOH . 
E 5 HOH A 36 636 18 HOH HOH . 
E 5 HOH A 37 637 4 HOH HOH . 
E 5 HOH A 38 638 59 HOH HOH . 
E 5 HOH A 39 639 82 HOH HOH . 
E 5 HOH A 40 640 64 HOH HOH . 
E 5 HOH A 41 641 58 HOH HOH . 
E 5 HOH A 42 642 31 HOH HOH . 
E 5 HOH A 43 643 23 HOH HOH . 
E 5 HOH A 44 644 98 HOH HOH . 
E 5 HOH A 45 645 35 HOH HOH . 
E 5 HOH A 46 646 56 HOH HOH . 
E 5 HOH A 47 647 19 HOH HOH . 
E 5 HOH A 48 648 91 HOH HOH . 
E 5 HOH A 49 649 97 HOH HOH . 
E 5 HOH A 50 650 27 HOH HOH . 
E 5 HOH A 51 651 74 HOH HOH . 
E 5 HOH A 52 652 5 HOH HOH . 
E 5 HOH A 53 653 30 HOH HOH . 
E 5 HOH A 54 654 90 HOH HOH . 
E 5 HOH A 55 655 15 HOH HOH . 
E 5 HOH A 56 656 17 HOH HOH . 
E 5 HOH A 57 657 73 HOH HOH . 
E 5 HOH A 58 658 38 HOH HOH . 
E 5 HOH A 59 659 21 HOH HOH . 
E 5 HOH A 60 660 71 HOH HOH . 
E 5 HOH A 61 661 11 HOH HOH . 
E 5 HOH A 62 662 6 HOH HOH . 
E 5 HOH A 63 663 54 HOH HOH . 
E 5 HOH A 64 664 55 HOH HOH . 
E 5 HOH A 65 665 62 HOH HOH . 
E 5 HOH A 66 666 69 HOH HOH . 
E 5 HOH A 67 667 41 HOH HOH . 
E 5 HOH A 68 668 40 HOH HOH . 
E 5 HOH A 69 669 52 HOH HOH . 
E 5 HOH A 70 670 16 HOH HOH . 
E 5 HOH A 71 671 129 HOH HOH . 
E 5 HOH A 72 672 68 HOH HOH . 
E 5 HOH A 73 673 92 HOH HOH . 
E 5 HOH A 74 674 37 HOH HOH . 
E 5 HOH A 75 675 96 HOH HOH . 
E 5 HOH A 76 676 60 HOH HOH . 
E 5 HOH A 77 677 24 HOH HOH . 
E 5 HOH A 78 678 102 HOH HOH . 
E 5 HOH A 79 679 67 HOH HOH . 
E 5 HOH A 80 680 99 HOH HOH . 
E 5 HOH A 81 681 130 HOH HOH . 
E 5 HOH A 82 682 26 HOH HOH . 
E 5 HOH A 83 683 34 HOH HOH . 
E 5 HOH A 84 684 128 HOH HOH . 
E 5 HOH A 85 685 116 HOH HOH . 
E 5 HOH A 86 686 48 HOH HOH . 
E 5 HOH A 87 687 47 HOH HOH . 
E 5 HOH A 88 688 44 HOH HOH . 
E 5 HOH A 89 689 76 HOH HOH . 
E 5 HOH A 90 690 65 HOH HOH . 
E 5 HOH A 91 691 42 HOH HOH . 
E 5 HOH A 92 692 57 HOH HOH . 
E 5 HOH A 93 693 43 HOH HOH . 
E 5 HOH A 94 694 50 HOH HOH . 
E 5 HOH A 95 695 53 HOH HOH . 
E 5 HOH A 96 696 72 HOH HOH . 
E 5 HOH A 97 697 61 HOH HOH . 
E 5 HOH A 98 698 39 HOH HOH . 
E 5 HOH A 99 699 84 HOH HOH . 
E 5 HOH A 100 700 51 HOH HOH . 
E 5 HOH A 101 701 126 HOH HOH . 
E 5 HOH A 102 702 111 HOH HOH . 
E 5 HOH A 103 703 104 HOH HOH . 
E 5 HOH A 104 704 25 HOH HOH . 
E 5 HOH A 105 705 119 HOH HOH . 
E 5 HOH A 106 706 115 HOH HOH . 
E 5 HOH A 107 707 83 HOH HOH . 
E 5 HOH A 108 708 79 HOH HOH . 
E 5 HOH A 109 709 70 HOH HOH . 
E 5 HOH A 110 710 45 HOH HOH . 
E 5 HOH A 111 711 95 HOH HOH . 
E 5 HOH A 112 712 112 HOH HOH . 
F 5 HOH B 1 701 36 HOH HOH . 
F 5 HOH B 2 702 22 HOH HOH . 
F 5 HOH B 3 703 49 HOH HOH . 
F 5 HOH B 4 704 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 A1IQN . . . D 4 -29.952 18.373 -3.721 1 40.96 ? C7 A1IQN 502 A 1 
HETATM 2 C C8 A1IQN . . . D 4 -28.455 18.173 -4.087 1 46.29 ? C8 A1IQN 502 A 1 
HETATM 3 C C9 A1IQN . . . D 4 -28.413 16.934 -5.016 1 39.57 ? C9 A1IQN 502 A 1 
HETATM 4 C C1 A1IQN . . . D 4 -31.827 15.541 -6.465 1 37.59 ? C1 A1IQN 502 A 1 
HETATM 5 C C5 A1IQN . . . D 4 -29.818 16.899 -5.656 1 37.81 ? C5 A1IQN 502 A 1 
HETATM 6 C C6 A1IQN . . . D 4 -30.32 15.558 -6.213 1 33.92 ? C6 A1IQN 502 A 1 
HETATM 7 C C4 A1IQN . . . D 4 -30.671 17.184 -4.391 1 40.74 ? C4 A1IQN 502 A 1 
HETATM 8 C C3 A1IQN . . . D 4 -32.144 17.241 -4.707 1 38.07 ? C3 A1IQN 502 A 1 
HETATM 9 C C2 A1IQN . . . D 4 -32.633 15.906 -5.202 1 47.12 ? C2 A1IQN 502 A 1 
HETATM 10 C C10 A1IQN . . . D 4 -32.871 18.362 -4.66 1 35.83 ? C10 A1IQN 502 A 1 
HETATM 11 C C11 A1IQN . . . D 4 -34.242 18.521 -5.034 1 29.81 ? C11 A1IQN 502 A 1 
HETATM 12 C C12 A1IQN . . . D 4 -34.832 19.676 -5.468 1 32.57 ? C12 A1IQN 502 A 1 
HETATM 13 C C13 A1IQN . . . D 4 -36.306 19.737 -5.797 1 35.99 ? C13 A1IQN 502 A 1 
HETATM 14 C C14 A1IQN . . . D 4 -36.998 21.001 -5.317 1 41.31 ? C14 A1IQN 502 A 1 
HETATM 15 C C15 A1IQN . . . D 4 -36.244 22.215 -5.82 1 34.07 ? C15 A1IQN 502 A 1 
HETATM 16 C C16 A1IQN . . . D 4 -34.808 22.183 -5.324 1 34.31 ? C16 A1IQN 502 A 1 
HETATM 17 C C17 A1IQN . . . D 4 -34.111 20.924 -5.775 1 40.02 ? C17 A1IQN 502 A 1 
HETATM 18 C C18 A1IQN . . . D 4 -33.002 20.995 -6.494 1 45.1 ? C18 A1IQN 502 A 1 
HETATM 19 C C21 A1IQN . . . D 4 -30.02 18.022 -6.687 1 38.6 ? C21 A1IQN 502 A 1 
HETATM 20 C C22 A1IQN . . . D 4 -27.146 16.875 -5.897 1 43.89 ? C22 A1IQN 502 A 1 
HETATM 21 C C23 A1IQN . . . D 4 -25.97 16.209 -5.187 1 46.01 ? C23 A1IQN 502 A 1 
HETATM 22 C C24 A1IQN . . . D 4 -26.724 18.242 -6.487 1 43.47 ? C24 A1IQN 502 A 1 
HETATM 23 C C25 A1IQN . . . D 4 -26.137 18.139 -7.828 1 49.34 ? C25 A1IQN 502 A 1 
HETATM 24 C C26 A1IQN . . . D 4 -25.689 18.002 -8.935 1 45.96 ? C26 A1IQN 502 A 1 
HETATM 25 C C28 A1IQN . . . D 4 -23.233 17.802 -10.63 1 41.06 ? C28 A1IQN 502 A 1 
HETATM 26 C C29 A1IQN . . . D 4 -25.842 18.891 -11.795 1 47.4 ? C29 A1IQN 502 A 1 
HETATM 27 C C30 A1IQN . . . D 4 -25.575 15.933 -11.091 1 51.76 ? C30 A1IQN 502 A 1 
HETATM 28 O O19 A1IQN . . . D 4 -34.121 23.334 -5.776 1 37.96 ? O19 A1IQN 502 A 1 
HETATM 29 O O20 A1IQN . . . D 4 -37.025 21.022 -3.88 1 47.93 ? O20 A1IQN 502 A 1 
HETATM 30 SI SI27 A1IQN . . . D 4 -25.075 17.656 -10.642 1 43.2 ? SI27 A1IQN 502 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#