data_9GYK
#
_model_server_result.job_id            sb4hUoY-JbwMf-d1s0mYiA 
_model_server_result.datetime_utc      '2024-12-16 01:35:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    9GYK 
#
_exptl.entry_id    9GYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              408.648 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-7~{a}-methyl-1-(4-trimethylsilylbuta-1,3-diynyl)-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GYK 
_cell.length_a            65.95 
_cell.length_b            65.95 
_cell.length_c            264.41 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GYK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.975 57.114375 -44.068333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C26 H36 O2 Si' 
_chem_comp.formula_weight    408.648 
_chem_comp.id                A1IQO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{S},3~{a}~{S},7~{a}~{S})-7~{a}-methyl-1-(4-trimethylsilylbuta-1,3-diynyl)-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 SI26 A1IQO sing 1 n n 
C28 SI26 A1IQO sing 2 n n 
SI26 C29 A1IQO sing 3 n n 
SI26 C25 A1IQO sing 4 n n 
C25 C24 A1IQO trip 5 n n 
C24 C23 A1IQO sing 6 n n 
C23 C22 A1IQO trip 7 n n 
C21 C5 A1IQO sing 8 n n 
C1 C6 A1IQO sing 9 n n 
C1 C2 A1IQO sing 10 n n 
C6 C5 A1IQO sing 11 n n 
C18 C17 A1IQO doub 12 n n 
C22 C9 A1IQO sing 13 n n 
C5 C9 A1IQO sing 14 n n 
C5 C4 A1IQO sing 15 n n 
C13 C12 A1IQO sing 16 n n 
C13 C14 A1IQO sing 17 n n 
C15 C16 A1IQO sing 18 n n 
C15 C14 A1IQO sing 19 n n 
C17 C12 A1IQO sing 20 n n 
C17 C16 A1IQO sing 21 n n 
O19 C16 A1IQO sing 22 n n 
C2 C3 A1IQO sing 23 n n 
C12 C11 A1IQO doub 24 z n 
C9 C8 A1IQO sing 25 n n 
C14 O20 A1IQO sing 26 n n 
C11 C10 A1IQO sing 27 n n 
C3 C10 A1IQO doub 28 e n 
C3 C4 A1IQO sing 29 n n 
C4 C7 A1IQO sing 30 n n 
C8 C7 A1IQO sing 31 n n 
C7 H1 A1IQO sing 32 n n 
C7 H2 A1IQO sing 33 n n 
C8 H3 A1IQO sing 34 n n 
C8 H4 A1IQO sing 35 n n 
C9 H5 A1IQO sing 36 n n 
C1 H6 A1IQO sing 37 n n 
C1 H7 A1IQO sing 38 n n 
C6 H8 A1IQO sing 39 n n 
C6 H9 A1IQO sing 40 n n 
C4 H10 A1IQO sing 41 n n 
C2 H11 A1IQO sing 42 n n 
C2 H12 A1IQO sing 43 n n 
C10 H13 A1IQO sing 44 n n 
C11 H14 A1IQO sing 45 n n 
C13 H15 A1IQO sing 46 n n 
C13 H16 A1IQO sing 47 n n 
C14 H17 A1IQO sing 48 n n 
C15 H18 A1IQO sing 49 n n 
C15 H19 A1IQO sing 50 n n 
C16 H20 A1IQO sing 51 n n 
C18 H21 A1IQO sing 52 n n 
C18 H22 A1IQO sing 53 n n 
C21 H23 A1IQO sing 54 n n 
C21 H24 A1IQO sing 55 n n 
C21 H25 A1IQO sing 56 n n 
C27 H26 A1IQO sing 57 n n 
C27 H27 A1IQO sing 58 n n 
C27 H28 A1IQO sing 59 n n 
C28 H29 A1IQO sing 60 n n 
C28 H30 A1IQO sing 61 n n 
C28 H31 A1IQO sing 62 n n 
C29 H32 A1IQO sing 63 n n 
C29 H33 A1IQO sing 64 n n 
C29 H34 A1IQO sing 65 n n 
O19 H35 A1IQO sing 66 n n 
O20 H36 A1IQO sing 67 n n 
#
_atom_sites.entry_id                     9GYK 
_atom_sites.fract_transf_matrix[1][1]    0.015163 
_atom_sites.fract_transf_matrix[1][2]    0.008754 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017509 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003782 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACT A 1 501 502 ACT ACT . 
D 4 A1IQO A 1 502 1 A1IQO XXX . 
E 5 HOH A 1 601 79 HOH HOH . 
E 5 HOH A 2 602 64 HOH HOH . 
E 5 HOH A 3 603 44 HOH HOH . 
E 5 HOH A 4 604 45 HOH HOH . 
E 5 HOH A 5 605 66 HOH HOH . 
E 5 HOH A 6 606 24 HOH HOH . 
E 5 HOH A 7 607 46 HOH HOH . 
E 5 HOH A 8 608 30 HOH HOH . 
E 5 HOH A 9 609 8 HOH HOH . 
E 5 HOH A 10 610 49 HOH HOH . 
E 5 HOH A 11 611 25 HOH HOH . 
E 5 HOH A 12 612 10 HOH HOH . 
E 5 HOH A 13 613 31 HOH HOH . 
E 5 HOH A 14 614 73 HOH HOH . 
E 5 HOH A 15 615 82 HOH HOH . 
E 5 HOH A 16 616 78 HOH HOH . 
E 5 HOH A 17 617 21 HOH HOH . 
E 5 HOH A 18 618 42 HOH HOH . 
E 5 HOH A 19 619 51 HOH HOH . 
E 5 HOH A 20 620 5 HOH HOH . 
E 5 HOH A 21 621 7 HOH HOH . 
E 5 HOH A 22 622 1 HOH HOH . 
E 5 HOH A 23 623 19 HOH HOH . 
E 5 HOH A 24 624 4 HOH HOH . 
E 5 HOH A 25 625 3 HOH HOH . 
E 5 HOH A 26 626 6 HOH HOH . 
E 5 HOH A 27 627 9 HOH HOH . 
E 5 HOH A 28 628 57 HOH HOH . 
E 5 HOH A 29 629 35 HOH HOH . 
E 5 HOH A 30 630 12 HOH HOH . 
E 5 HOH A 31 631 72 HOH HOH . 
E 5 HOH A 32 632 37 HOH HOH . 
E 5 HOH A 33 633 60 HOH HOH . 
E 5 HOH A 34 634 68 HOH HOH . 
E 5 HOH A 35 635 34 HOH HOH . 
E 5 HOH A 36 636 18 HOH HOH . 
E 5 HOH A 37 637 39 HOH HOH . 
E 5 HOH A 38 638 27 HOH HOH . 
E 5 HOH A 39 639 53 HOH HOH . 
E 5 HOH A 40 640 77 HOH HOH . 
E 5 HOH A 41 641 17 HOH HOH . 
E 5 HOH A 42 642 76 HOH HOH . 
E 5 HOH A 43 643 16 HOH HOH . 
E 5 HOH A 44 644 47 HOH HOH . 
E 5 HOH A 45 645 32 HOH HOH . 
E 5 HOH A 46 646 15 HOH HOH . 
E 5 HOH A 47 647 65 HOH HOH . 
E 5 HOH A 48 648 36 HOH HOH . 
E 5 HOH A 49 649 52 HOH HOH . 
E 5 HOH A 50 650 58 HOH HOH . 
E 5 HOH A 51 651 11 HOH HOH . 
E 5 HOH A 52 652 13 HOH HOH . 
E 5 HOH A 53 653 56 HOH HOH . 
E 5 HOH A 54 654 81 HOH HOH . 
E 5 HOH A 55 655 63 HOH HOH . 
E 5 HOH A 56 656 59 HOH HOH . 
E 5 HOH A 57 657 40 HOH HOH . 
E 5 HOH A 58 658 83 HOH HOH . 
E 5 HOH A 59 659 48 HOH HOH . 
E 5 HOH A 60 660 22 HOH HOH . 
E 5 HOH A 61 661 23 HOH HOH . 
E 5 HOH A 62 662 84 HOH HOH . 
E 5 HOH A 63 663 69 HOH HOH . 
E 5 HOH A 64 664 55 HOH HOH . 
E 5 HOH A 65 665 26 HOH HOH . 
E 5 HOH A 66 666 70 HOH HOH . 
E 5 HOH A 67 667 75 HOH HOH . 
E 5 HOH A 68 668 67 HOH HOH . 
E 5 HOH A 69 669 74 HOH HOH . 
F 5 HOH B 1 701 29 HOH HOH . 
F 5 HOH B 2 702 62 HOH HOH . 
F 5 HOH B 3 703 2 HOH HOH . 
F 5 HOH B 4 704 14 HOH HOH . 
F 5 HOH B 5 705 71 HOH HOH . 
F 5 HOH B 6 706 61 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 A1IQO . . . D 4 -29.552 18.38 -4.089 1 66.73 ? C7 A1IQO 502 A 1 
HETATM 2 C C8 A1IQO . . . D 4 -28.075 18.087 -4.425 1 69.66 ? C8 A1IQO 502 A 1 
HETATM 3 C C9 A1IQO . . . D 4 -28.113 16.799 -5.275 1 65.12 ? C9 A1IQO 502 A 1 
HETATM 4 C C1 A1IQO . . . D 4 -31.564 15.503 -6.709 1 58.27 ? C1 A1IQO 502 A 1 
HETATM 5 C C5 A1IQO . . . D 4 -29.514 16.772 -5.915 1 57.34 ? C5 A1IQO 502 A 1 
HETATM 6 C C6 A1IQO . . . D 4 -30.076 15.429 -6.386 1 49.65 ? C6 A1IQO 502 A 1 
HETATM 7 C C4 A1IQO . . . D 4 -30.336 17.188 -4.67 1 55.78 ? C4 A1IQO 502 A 1 
HETATM 8 C C3 A1IQO . . . D 4 -31.806 17.311 -4.966 1 53.91 ? C3 A1IQO 502 A 1 
HETATM 9 C C2 A1IQO . . . D 4 -32.364 16.029 -5.522 1 62.02 ? C2 A1IQO 502 A 1 
HETATM 10 C C10 A1IQO . . . D 4 -32.502 18.443 -4.789 1 49.29 ? C10 A1IQO 502 A 1 
HETATM 11 C C11 A1IQO . . . D 4 -33.853 18.626 -5.102 1 46.73 ? C11 A1IQO 502 A 1 
HETATM 12 C C12 A1IQO . . . D 4 -34.449 19.766 -5.488 1 42.02 ? C12 A1IQO 502 A 1 
HETATM 13 C C13 A1IQO . . . D 4 -35.926 19.788 -5.791 1 47.18 ? C13 A1IQO 502 A 1 
HETATM 14 C C14 A1IQO . . . D 4 -36.616 21.031 -5.266 1 58.24 ? C14 A1IQO 502 A 1 
HETATM 15 C C15 A1IQO . . . D 4 -35.891 22.262 -5.77 1 46.65 ? C15 A1IQO 502 A 1 
HETATM 16 C C16 A1IQO . . . D 4 -34.455 22.271 -5.266 1 52.62 ? C16 A1IQO 502 A 1 
HETATM 17 C C17 A1IQO . . . D 4 -33.73 21.031 -5.729 1 50.51 ? C17 A1IQO 502 A 1 
HETATM 18 C C18 A1IQO . . . D 4 -32.578 21.121 -6.366 1 57.77 ? C18 A1IQO 502 A 1 
HETATM 19 C C21 A1IQO . . . D 4 -29.656 17.833 -7.02 1 59.35 ? C21 A1IQO 502 A 1 
HETATM 20 C C22 A1IQO . . . D 4 -27.152 16.85 -6.302 1 67.7 ? C22 A1IQO 502 A 1 
HETATM 21 C C23 A1IQO . . . D 4 -26.395 16.942 -7.222 1 86.78 ? C23 A1IQO 502 A 1 
HETATM 22 C C24 A1IQO . . . D 4 -25.737 17.223 -8.389 1 97.87 ? C24 A1IQO 502 A 1 
HETATM 23 C C25 A1IQO . . . D 4 -25.136 17.473 -9.39 1 96.95 ? C25 A1IQO 502 A 1 
HETATM 24 C C27 A1IQO . . . D 4 -24.967 19.028 -11.937 1 94.75 ? C27 A1IQO 502 A 1 
HETATM 25 C C28 A1IQO . . . D 4 -23.626 16.295 -11.667 1 104.46 ? C28 A1IQO 502 A 1 
HETATM 26 C C29 A1IQO . . . D 4 -22.522 18.688 -10.134 1 96.46 ? C29 A1IQO 502 A 1 
HETATM 27 O O19 A1IQO . . . D 4 -33.788 23.455 -5.694 1 56.82 ? O19 A1IQO 502 A 1 
HETATM 28 O O20 A1IQO . . . D 4 -36.597 21.009 -3.832 1 65.94 ? O20 A1IQO 502 A 1 
HETATM 29 SI SI26 A1IQO . . . D 4 -24.044 17.881 -10.81 1 97.85 ? SI26 A1IQO 502 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           424 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           29 
#