data_9H1W # _model_server_result.job_id VKQeTN5DpSU3I2I_7Avd4Q _model_server_result.datetime_utc '2025-06-27 05:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":314}' # _entry.id 9H1W # _exptl.entry_id 9H1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9H1W _cell.length_a 89.75 _cell.length_b 131.75 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 O N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 205 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 205 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.392 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 272 n n C2 C1 MPG sing 273 n n C3 C4 MPG sing 274 n n C4 C5 MPG sing 275 n n C5 C6 MPG sing 276 n n C6 C7 MPG sing 277 n n C7 C8 MPG sing 278 n n C8 C9 MPG sing 279 n n C9 C10 MPG doub 280 z n C10 C11 MPG sing 281 n n C11 C12 MPG sing 282 n n C12 C13 MPG sing 283 n n C13 C14 MPG sing 284 n n C14 C15 MPG sing 285 n n C15 C16 MPG sing 286 n n C16 C17 MPG sing 287 n n C17 C18 MPG sing 288 n n O1 C1 MPG sing 289 n n O1 CX3 MPG sing 290 n n CXD O2 MPG sing 291 n n CXD C21 MPG sing 292 n n CXD CX3 MPG sing 293 n n C21 O3 MPG sing 294 n n C2 H21C MPG sing 295 n n C2 H22C MPG sing 296 n n C3 H31C MPG sing 297 n n C3 H32C MPG sing 298 n n CX3 O4 MPG doub 299 n n C4 H41C MPG sing 300 n n C4 H42C MPG sing 301 n n C5 H51C MPG sing 302 n n C5 H52C MPG sing 303 n n C6 H61C MPG sing 304 n n C6 H62C MPG sing 305 n n C7 H71C MPG sing 306 n n C7 H72C MPG sing 307 n n C8 H81C MPG sing 308 n n C8 H82C MPG sing 309 n n C9 H9 MPG sing 310 n n C10 H10 MPG sing 311 n n C11 H111 MPG sing 312 n n C11 H112 MPG sing 313 n n C12 H121 MPG sing 314 n n C12 H122 MPG sing 315 n n C13 H131 MPG sing 316 n n C13 H132 MPG sing 317 n n C14 H141 MPG sing 318 n n C14 H142 MPG sing 319 n n C15 H151 MPG sing 320 n n C15 H152 MPG sing 321 n n C16 H161 MPG sing 322 n n C16 H162 MPG sing 323 n n C17 H171 MPG sing 324 n n C17 H172 MPG sing 325 n n C18 H181 MPG sing 326 n n C18 H182 MPG sing 327 n n C18 H183 MPG sing 328 n n C1 HX31 MPG sing 329 n n C1 HX32 MPG sing 330 n n CXD HXD MPG sing 331 n n O2 H2 MPG sing 332 n n C21 H211 MPG sing 333 n n C21 H212 MPG sing 334 n n O3 H3 MPG sing 335 n n # _atom_sites.entry_id 9H1W _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 CL A 1 302 302 CL CL . D 4 BOG A 1 303 303 BOG BOG . E 4 BOG A 1 304 304 BOG BOG . F 4 BOG A 1 305 305 BOG BOG . G 5 MPG A 1 306 306 MPG MPG . H 4 BOG A 1 307 307 BOG BOG . I 4 BOG A 1 308 308 BOG BOG . J 5 MPG A 1 309 309 MPG MPG . K 5 MPG A 1 310 310 MPG MPG . L 5 MPG A 1 311 311 MPG MPG . M 5 MPG A 1 312 312 MPG MPG . N 4 BOG A 1 313 313 BOG BOG . O 5 MPG A 1 314 314 MPG MPG . P 4 BOG A 1 315 315 BOG BOG . Q 4 BOG A 1 316 316 BOG BOG . R 6 HOH A 1 401 432 HOH HOH . R 6 HOH A 2 402 401 HOH HOH . R 6 HOH A 3 403 402 HOH HOH . R 6 HOH A 4 404 404 HOH HOH . R 6 HOH A 5 405 407 HOH HOH . R 6 HOH A 6 406 5 HOH HOH . R 6 HOH A 7 407 408 HOH HOH . R 6 HOH A 8 408 2 HOH HOH . R 6 HOH A 9 409 409 HOH HOH . R 6 HOH A 10 410 411 HOH HOH . R 6 HOH A 11 411 412 HOH HOH . R 6 HOH A 12 412 413 HOH HOH . R 6 HOH A 13 413 415 HOH HOH . R 6 HOH A 14 414 416 HOH HOH . R 6 HOH A 15 415 19 HOH HOH . R 6 HOH A 16 416 418 HOH HOH . R 6 HOH A 17 417 419 HOH HOH . R 6 HOH A 18 418 420 HOH HOH . R 6 HOH A 19 419 421 HOH HOH . R 6 HOH A 20 420 423 HOH HOH . R 6 HOH A 21 421 422 HOH HOH . R 6 HOH A 22 422 426 HOH HOH . R 6 HOH A 23 423 425 HOH HOH . R 6 HOH A 24 424 427 HOH HOH . R 6 HOH A 25 425 424 HOH HOH . R 6 HOH A 26 426 428 HOH HOH . R 6 HOH A 27 427 430 HOH HOH . R 6 HOH A 28 428 431 HOH HOH . R 6 HOH A 29 429 405 HOH HOH . R 6 HOH A 30 430 20 HOH HOH . R 6 HOH A 31 431 435 HOH HOH . R 6 HOH A 32 432 437 HOH HOH . R 6 HOH A 33 433 438 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . O 5 15.074 26.916 7.834 1 104.87 ? C2 MPG 314 A 1 HETATM 2 C C3 MPG . . . O 5 14.207 26.634 6.603 1 106.49 ? C3 MPG 314 A 1 HETATM 3 C C4 MPG . . . O 5 14.246 25.14 6.275 1 113.42 ? C4 MPG 314 A 1 HETATM 4 C C5 MPG . . . O 5 13.441 24.391 7.337 1 117.1 ? C5 MPG 314 A 1 HETATM 5 C C6 MPG . . . O 5 13.654 22.881 7.233 1 110.12 ? C6 MPG 314 A 1 HETATM 6 C C7 MPG . . . O 5 13.003 22.207 8.443 1 106.19 ? C7 MPG 314 A 1 HETATM 7 C C8 MPG . . . O 5 13.462 20.752 8.546 1 108.35 ? C8 MPG 314 A 1 HETATM 8 C C9 MPG . . . O 5 12.718 19.928 7.497 1 112.06 ? C9 MPG 314 A 1 HETATM 9 C C10 MPG . . . O 5 13.219 18.833 6.949 1 113.41 ? C10 MPG 314 A 1 HETATM 10 C C11 MPG . . . O 5 14.587 18.262 7.317 1 107.01 ? C11 MPG 314 A 1 HETATM 11 C C12 MPG . . . O 5 14.412 16.896 7.998 1 107.69 ? C12 MPG 314 A 1 HETATM 12 C C13 MPG . . . O 5 13.48 15.992 7.272 1 113.98 ? C13 MPG 314 A 1 HETATM 13 O O1 MPG . . . O 5 13.576 26.48 9.683 1 116.81 ? O1 MPG 314 A 1 HETATM 14 C C1 MPG . . . O 5 14.249 27.499 8.987 1 113.58 ? C1 MPG 314 A 1 HETATM 15 C CXD MPG . . . O 5 13.363 25.033 11.776 1 105.91 ? CXD MPG 314 A 1 HETATM 16 O O2 MPG . . . O 5 12.808 25.583 12.928 1 104.55 ? O2 MPG 314 A 1 HETATM 17 C C21 MPG . . . O 5 14.359 23.933 12.174 1 98.19 ? C21 MPG 314 A 1 HETATM 18 O O3 MPG . . . O 5 13.885 23.212 13.267 1 88.01 ? O3 MPG 314 A 1 HETATM 19 O O4 MPG . . . O 5 14.998 26.698 11.425 1 99.49 ? O4 MPG 314 A 1 HETATM 20 C CX3 MPG . . . O 5 14.058 26.141 10.966 1 108.83 ? CX3 MPG 314 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #