data_9H4D # _model_server_result.job_id cPA--810bjdt4zcmrbX2-g _model_server_result.datetime_utc '2025-04-08 12:59:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 9H4D # _exptl.entry_id 9H4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.566 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (E)-N-[(1S)-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[(2-oxidanylidene-3H-benzimidazol-1-yl)methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9H4D _cell.length_a 64.601 _cell.length_b 85.42 _cell.length_c 120.161 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 94 1_555 A SG CYS 112 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf2 A SG CYS 67 A CYS 99 1_555 A SG CYS 114 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 62 B CYS 94 1_555 B SG CYS 112 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 B SG CYS 67 B CYS 99 1_555 B SG CYS 114 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C25 H26 F3 N5 O3 S' _chem_comp.formula_weight 533.566 _chem_comp.id A1ISH _chem_comp.mon_nstd_flag . _chem_comp.name (E)-N-[(1S)-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[(2-oxidanylidene-3H-benzimidazol-1-yl)methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1ISH sing 1 n n C1 C6 A1ISH sing 2 n n C2 C3 A1ISH sing 3 n n C3 C4 A1ISH sing 4 n n C3 F7 A1ISH sing 5 n n C3 F8 A1ISH sing 6 n n C4 C5 A1ISH sing 7 n n C5 C6 A1ISH sing 8 n n C6 C9 A1ISH sing 9 n n C9 C10 A1ISH sing 10 n n C9 N11 A1ISH sing 11 n n C10 N12 A1ISH sing 12 n n C10 O13 A1ISH doub 13 n n N11 C30 A1ISH sing 14 n n N12 C14 A1ISH sing 15 n n C14 S15 A1ISH sing 16 n y C14 N18 A1ISH doub 17 n y S15 C16 A1ISH sing 18 n y C16 C17 A1ISH doub 19 n y C16 C19 A1ISH sing 20 n n C17 N18 A1ISH sing 21 n y C19 N20 A1ISH sing 22 n n N20 C21 A1ISH sing 23 n n N20 C24 A1ISH sing 24 n n C21 N22 A1ISH sing 25 n n C21 O29 A1ISH doub 26 n n N22 C23 A1ISH sing 27 n n C23 C24 A1ISH doub 28 n y C23 C25 A1ISH sing 29 n y C24 C28 A1ISH sing 30 n y C25 C26 A1ISH doub 31 n y C26 C27 A1ISH sing 32 n y C27 C28 A1ISH doub 33 n y C30 C31 A1ISH sing 34 n n C30 O32 A1ISH doub 35 n n C31 C33 A1ISH doub 36 e n C31 F34 A1ISH sing 37 n n C33 C35 A1ISH sing 38 n n C35 C36 A1ISH sing 39 n n C35 C37 A1ISH sing 40 n n C36 C37 A1ISH sing 41 n n C1 H1 A1ISH sing 42 n n C1 H2 A1ISH sing 43 n n C2 H4 A1ISH sing 44 n n C2 H3 A1ISH sing 45 n n C17 H14 A1ISH sing 46 n n C19 H16 A1ISH sing 47 n n C19 H15 A1ISH sing 48 n n C25 H18 A1ISH sing 49 n n C26 H19 A1ISH sing 50 n n C27 H20 A1ISH sing 51 n n C28 H21 A1ISH sing 52 n n C4 H6 A1ISH sing 53 n n C4 H5 A1ISH sing 54 n n C5 H8 A1ISH sing 55 n n C5 H7 A1ISH sing 56 n n C6 H9 A1ISH sing 57 n n C9 H10 A1ISH sing 58 n n N11 H11 A1ISH sing 59 n n N12 H13 A1ISH sing 60 n n N22 H17 A1ISH sing 61 n n C33 H22 A1ISH sing 62 n n C35 H23 A1ISH sing 63 n n C36 H25 A1ISH sing 64 n n C36 H24 A1ISH sing 65 n n C37 H26 A1ISH sing 66 n n C37 H27 A1ISH sing 67 n n # _atom_sites.entry_id 9H4D _atom_sites.fract_transf_matrix[1][1] 0.01548 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011707 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1ISH A 1 201 201 A1ISH LI1 . D 3 HOH A 1 301 17 HOH HOH . D 3 HOH A 2 302 13 HOH HOH . D 3 HOH A 3 303 23 HOH HOH . D 3 HOH A 4 304 3 HOH HOH . D 3 HOH A 5 305 1 HOH HOH . D 3 HOH A 6 306 5 HOH HOH . D 3 HOH A 7 307 6 HOH HOH . D 3 HOH A 8 308 25 HOH HOH . D 3 HOH A 9 309 24 HOH HOH . D 3 HOH A 10 310 19 HOH HOH . D 3 HOH A 11 311 7 HOH HOH . D 3 HOH A 12 312 16 HOH HOH . D 3 HOH A 13 313 28 HOH HOH . D 3 HOH A 14 314 8 HOH HOH . D 3 HOH A 15 315 9 HOH HOH . D 3 HOH A 16 316 11 HOH HOH . D 3 HOH A 17 317 22 HOH HOH . D 3 HOH A 18 318 20 HOH HOH . E 3 HOH B 1 201 10 HOH HOH . E 3 HOH B 2 202 4 HOH HOH . E 3 HOH B 3 203 2 HOH HOH . E 3 HOH B 4 204 21 HOH HOH . E 3 HOH B 5 205 18 HOH HOH . E 3 HOH B 6 206 15 HOH HOH . E 3 HOH B 7 207 14 HOH HOH . E 3 HOH B 8 208 26 HOH HOH . E 3 HOH B 9 209 27 HOH HOH . E 3 HOH B 10 210 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1ISH . . . C 2 -12.005 -15.023 -18.729 1 73.79 ? C1 A1ISH 201 A 1 HETATM 2 C C2 A1ISH . . . C 2 -11.381 -15.148 -20.14 1 74.7 ? C2 A1ISH 201 A 1 HETATM 3 C C3 A1ISH . . . C 2 -11.093 -13.73 -20.699 1 75.96 ? C3 A1ISH 201 A 1 HETATM 4 C C14 A1ISH . . . C 2 -16.542 -11.262 -17.303 1 72.1 ? C14 A1ISH 201 A 1 HETATM 5 C C16 A1ISH . . . C 2 -18.802 -10.376 -17.464 1 73.1 ? C16 A1ISH 201 A 1 HETATM 6 C C17 A1ISH . . . C 2 -17.928 -9.449 -17.049 1 72.95 ? C17 A1ISH 201 A 1 HETATM 7 C C19 A1ISH . . . C 2 -20.293 -10.194 -17.617 1 73.55 ? C19 A1ISH 201 A 1 HETATM 8 C C21 A1ISH . . . C 2 -21.309 -8.769 -15.825 1 74.32 ? C21 A1ISH 201 A 1 HETATM 9 C C23 A1ISH . . . C 2 -21.217 -10.153 -14.078 1 75.19 ? C23 A1ISH 201 A 1 HETATM 10 C C24 A1ISH . . . C 2 -20.728 -10.835 -15.169 1 74.95 ? C24 A1ISH 201 A 1 HETATM 11 C C25 A1ISH . . . C 2 -21.365 -10.73 -12.822 1 75.52 ? C25 A1ISH 201 A 1 HETATM 12 C C26 A1ISH . . . C 2 -20.948 -12.065 -12.748 1 75.71 ? C26 A1ISH 201 A 1 HETATM 13 C C27 A1ISH . . . C 2 -20.415 -12.752 -13.855 1 75.65 ? C27 A1ISH 201 A 1 HETATM 14 C C28 A1ISH . . . C 2 -20.312 -12.158 -15.117 1 75.18 ? C28 A1ISH 201 A 1 HETATM 15 C C30 A1ISH . . . C 2 -14.36 -15.685 -15.634 1 72.52 ? C30 A1ISH 201 A 1 HETATM 16 C C4 A1ISH . . . C 2 -12.369 -12.862 -20.814 1 74.95 ? C4 A1ISH 201 A 1 HETATM 17 C C5 A1ISH . . . C 2 -13.029 -12.748 -19.42 1 73.95 ? C5 A1ISH 201 A 1 HETATM 18 C C6 A1ISH . . . C 2 -13.288 -14.149 -18.811 1 73.2 ? C6 A1ISH 201 A 1 HETATM 19 F F7 A1ISH . . . C 2 -10.187 -13.078 -19.917 1 76.26 ? F7 A1ISH 201 A 1 HETATM 20 F F8 A1ISH . . . C 2 -10.573 -13.874 -21.937 1 77.55 ? F8 A1ISH 201 A 1 HETATM 21 C C9 A1ISH . . . C 2 -13.991 -14.047 -17.433 1 72.27 ? C9 A1ISH 201 A 1 HETATM 22 C C10 A1ISH . . . C 2 -15.304 -13.311 -17.576 1 71.49 ? C10 A1ISH 201 A 1 HETATM 23 N N11 A1ISH . . . C 2 -14.303 -15.395 -16.94 1 71.99 ? N11 A1ISH 201 A 1 HETATM 24 N N12 A1ISH . . . C 2 -15.414 -12.002 -17.249 1 71.51 ? N12 A1ISH 201 A 1 HETATM 25 O O13 A1ISH . . . C 2 -16.227 -13.962 -17.995 1 71.18 ? O13 A1ISH 201 A 1 HETATM 26 S S15 A1ISH . . . C 2 -18.077 -11.938 -17.746 1 72.72 ? S15 A1ISH 201 A 1 HETATM 27 N N18 A1ISH . . . C 2 -16.619 -10.056 -16.952 1 72.54 ? N18 A1ISH 201 A 1 HETATM 28 N N20 A1ISH . . . C 2 -20.799 -9.952 -16.268 1 74.41 ? N20 A1ISH 201 A 1 HETATM 29 N N22 A1ISH . . . C 2 -21.583 -8.859 -14.495 1 74.51 ? N22 A1ISH 201 A 1 HETATM 30 O O29 A1ISH . . . C 2 -21.427 -7.767 -16.491 1 74.51 ? O29 A1ISH 201 A 1 HETATM 31 C C31 A1ISH . . . C 2 -14.689 -17.065 -15.255 1 73.06 ? C31 A1ISH 201 A 1 HETATM 32 O O32 A1ISH . . . C 2 -14.134 -14.854 -14.782 1 73.16 ? O32 A1ISH 201 A 1 HETATM 33 C C33 A1ISH . . . C 2 -15.169 -17.54 -14.099 1 73.71 ? C33 A1ISH 201 A 1 HETATM 34 F F34 A1ISH . . . C 2 -14.52 -17.962 -16.211 1 73.27 ? F34 A1ISH 201 A 1 HETATM 35 C C35 A1ISH . . . C 2 -15.546 -16.841 -12.815 1 74.33 ? C35 A1ISH 201 A 1 HETATM 36 C C36 A1ISH . . . C 2 -16.853 -17.322 -12.134 1 74.37 ? C36 A1ISH 201 A 1 HETATM 37 C C37 A1ISH . . . C 2 -15.487 -17.762 -11.564 1 74.15 ? C37 A1ISH 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #