data_9H4O # _model_server_result.job_id YYj55-7Yhf1MCLUU_QJONQ _model_server_result.datetime_utc '2025-04-06 04:31:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 9H4O # _exptl.entry_id 9H4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 553.521 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (E)-N-[(1S)-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[[(4S)-2-oxidanylidene-4-(trifluoromethyl)imidazolidin-1-yl]methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.82 _cell.angle_gamma 90 _cell.entry_id 9H4O _cell.length_a 61.187 _cell.length_b 59.064 _cell.length_c 71.185 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,N,O 1 1 C,D,K,L,M,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 94 1_555 A SG CYS 112 A CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? disulf ? disulf2 A SG CYS 67 A CYS 99 1_555 A SG CYS 114 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 62 B CYS 94 1_555 B SG CYS 112 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf4 B SG CYS 67 B CYS 99 1_555 B SG CYS 114 B CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 C SG CYS 62 C CYS 94 1_555 C SG CYS 112 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 C SG CYS 67 C CYS 99 1_555 C SG CYS 114 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 D SG CYS 62 D CYS 94 1_555 D SG CYS 112 D CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf8 D SG CYS 67 D CYS 99 1_555 D SG CYS 114 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C22 H25 F6 N5 O3 S' _chem_comp.formula_weight 553.521 _chem_comp.id A1ISG _chem_comp.mon_nstd_flag . _chem_comp.name (E)-N-[(1S)-1-[4,4-bis(fluoranyl)cyclohexyl]-2-oxidanylidene-2-[[5-[[(4S)-2-oxidanylidene-4-(trifluoromethyl)imidazolidin-1-yl]methyl]-1,3-thiazol-2-yl]amino]ethyl]-3-cyclopropyl-2-fluoranyl-prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1ISG sing 1 n n C1 C6 A1ISG sing 2 n n C2 C3 A1ISG sing 3 n n C3 C4 A1ISG sing 4 n n C3 F7 A1ISG sing 5 n n C3 F8 A1ISG sing 6 n n C4 C5 A1ISG sing 7 n n C5 C6 A1ISG sing 8 n n C6 C9 A1ISG sing 9 n n C9 C10 A1ISG sing 10 n n C9 N11 A1ISG sing 11 n n C10 N12 A1ISG sing 12 n n C10 O13 A1ISG doub 13 n n N11 C30 A1ISG sing 14 n n N12 C14 A1ISG sing 15 n n C14 S15 A1ISG sing 16 n y C14 N18 A1ISG doub 17 n y S15 C16 A1ISG sing 18 n y C16 C17 A1ISG doub 19 n y C16 C19 A1ISG sing 20 n n C17 N18 A1ISG sing 21 n y C19 N20 A1ISG sing 22 n n N20 C21 A1ISG sing 23 n n N20 C24 A1ISG sing 24 n n C21 C22 A1ISG sing 25 n n C22 N23 A1ISG sing 26 n n C22 C26 A1ISG sing 27 n n N23 C24 A1ISG sing 28 n n C24 O25 A1ISG doub 29 n n C26 F27 A1ISG sing 30 n n C26 F28 A1ISG sing 31 n n C26 F29 A1ISG sing 32 n n C30 C31 A1ISG sing 33 n n C30 O32 A1ISG doub 34 n n C31 C33 A1ISG doub 35 e n C31 F34 A1ISG sing 36 n n C33 C35 A1ISG sing 37 n n C35 C36 A1ISG sing 38 n n C35 C37 A1ISG sing 39 n n C36 C37 A1ISG sing 40 n n C1 H1 A1ISG sing 41 n n C1 H2 A1ISG sing 42 n n C2 H3 A1ISG sing 43 n n C2 H4 A1ISG sing 44 n n C17 H5 A1ISG sing 45 n n C19 H6 A1ISG sing 46 n n C19 H7 A1ISG sing 47 n n C21 H8 A1ISG sing 48 n n C21 H9 A1ISG sing 49 n n C22 H10 A1ISG sing 50 n n C4 H11 A1ISG sing 51 n n C4 H12 A1ISG sing 52 n n C5 H13 A1ISG sing 53 n n C5 H14 A1ISG sing 54 n n C6 H15 A1ISG sing 55 n n C9 H16 A1ISG sing 56 n n N11 H17 A1ISG sing 57 n n N12 H18 A1ISG sing 58 n n N23 H19 A1ISG sing 59 n n C33 H20 A1ISG sing 60 n n C35 H21 A1ISG sing 61 n n C36 H22 A1ISG sing 62 n n C36 H23 A1ISG sing 63 n n C37 H24 A1ISG sing 64 n n C37 H25 A1ISG sing 65 n n # _atom_sites.entry_id 9H4O _atom_sites.fract_transf_matrix[1][1] 0.016343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00342 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 201 1 SO4 SO4 . F 2 SO4 A 1 202 4 SO4 SO4 . G 2 SO4 A 1 203 5 SO4 SO4 . H 3 A1ISG B 1 201 1 A1ISG LI1 . I 2 SO4 B 1 202 2 SO4 SO4 . J 2 SO4 B 1 203 6 SO4 SO4 . K 3 A1ISG C 1 201 1 A1ISG LI1 . L 2 SO4 C 1 202 7 SO4 SO4 . M 2 SO4 D 1 201 3 SO4 SO4 . N 4 HOH A 1 301 13 HOH HOH . N 4 HOH A 2 302 9 HOH HOH . N 4 HOH A 3 303 8 HOH HOH . N 4 HOH A 4 304 4 HOH HOH . N 4 HOH A 5 305 12 HOH HOH . N 4 HOH A 6 306 2 HOH HOH . N 4 HOH A 7 307 46 HOH HOH . N 4 HOH A 8 308 41 HOH HOH . N 4 HOH A 9 309 18 HOH HOH . N 4 HOH A 10 310 28 HOH HOH . N 4 HOH A 11 311 24 HOH HOH . N 4 HOH A 12 312 49 HOH HOH . N 4 HOH A 13 313 51 HOH HOH . N 4 HOH A 14 314 20 HOH HOH . N 4 HOH A 15 315 66 HOH HOH . N 4 HOH A 16 316 56 HOH HOH . N 4 HOH A 17 317 17 HOH HOH . N 4 HOH A 18 318 25 HOH HOH . N 4 HOH A 19 319 36 HOH HOH . N 4 HOH A 20 320 68 HOH HOH . N 4 HOH A 21 321 30 HOH HOH . N 4 HOH A 22 322 21 HOH HOH . N 4 HOH A 23 323 14 HOH HOH . N 4 HOH A 24 324 10 HOH HOH . N 4 HOH A 25 325 60 HOH HOH . N 4 HOH A 26 326 34 HOH HOH . N 4 HOH A 27 327 40 HOH HOH . N 4 HOH A 28 328 31 HOH HOH . O 4 HOH B 1 301 44 HOH HOH . O 4 HOH B 2 302 6 HOH HOH . O 4 HOH B 3 303 58 HOH HOH . O 4 HOH B 4 304 45 HOH HOH . O 4 HOH B 5 305 16 HOH HOH . O 4 HOH B 6 306 53 HOH HOH . O 4 HOH B 7 307 23 HOH HOH . O 4 HOH B 8 308 15 HOH HOH . O 4 HOH B 9 309 42 HOH HOH . O 4 HOH B 10 310 26 HOH HOH . O 4 HOH B 11 311 27 HOH HOH . O 4 HOH B 12 312 47 HOH HOH . O 4 HOH B 13 313 7 HOH HOH . O 4 HOH B 14 314 38 HOH HOH . O 4 HOH B 15 315 62 HOH HOH . O 4 HOH B 16 316 59 HOH HOH . O 4 HOH B 17 317 54 HOH HOH . O 4 HOH B 18 318 5 HOH HOH . O 4 HOH B 19 319 74 HOH HOH . O 4 HOH B 20 320 32 HOH HOH . O 4 HOH B 21 321 65 HOH HOH . O 4 HOH B 22 322 22 HOH HOH . O 4 HOH B 23 323 61 HOH HOH . O 4 HOH B 24 324 55 HOH HOH . O 4 HOH B 25 325 43 HOH HOH . P 4 HOH C 1 301 50 HOH HOH . P 4 HOH C 2 302 11 HOH HOH . P 4 HOH C 3 303 1 HOH HOH . P 4 HOH C 4 304 69 HOH HOH . P 4 HOH C 5 305 37 HOH HOH . P 4 HOH C 6 306 75 HOH HOH . P 4 HOH C 7 307 52 HOH HOH . P 4 HOH C 8 308 67 HOH HOH . P 4 HOH C 9 309 73 HOH HOH . P 4 HOH C 10 310 63 HOH HOH . P 4 HOH C 11 311 29 HOH HOH . Q 4 HOH D 1 301 64 HOH HOH . Q 4 HOH D 2 302 19 HOH HOH . Q 4 HOH D 3 303 33 HOH HOH . Q 4 HOH D 4 304 3 HOH HOH . Q 4 HOH D 5 305 35 HOH HOH . Q 4 HOH D 6 306 48 HOH HOH . Q 4 HOH D 7 307 57 HOH HOH . Q 4 HOH D 8 308 71 HOH HOH . Q 4 HOH D 9 309 39 HOH HOH . Q 4 HOH D 10 310 72 HOH HOH . Q 4 HOH D 11 311 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1ISG . . . K 3 0.304 2.855 -57.688 1 61.96 ? C1 A1ISG 201 C 1 HETATM 2 C C2 A1ISG . . . K 3 -0.423 3.347 -58.962 1 62.53 ? C2 A1ISG 201 C 1 HETATM 3 C C3 A1ISG . . . K 3 0.512 4.284 -59.759 1 63.79 ? C3 A1ISG 201 C 1 HETATM 4 C C14 A1ISG . . . K 3 3.358 6.259 -53.87 1 64.9 ? C14 A1ISG 201 C 1 HETATM 5 C C16 A1ISG . . . K 3 3.647 8.2 -52.465 1 66.54 ? C16 A1ISG 201 C 1 HETATM 6 C C17 A1ISG . . . K 3 4.784 7.846 -53.069 1 66.44 ? C17 A1ISG 201 C 1 HETATM 7 C C19 A1ISG . . . K 3 3.525 9.351 -51.504 1 67.57 ? C19 A1ISG 201 C 1 HETATM 8 C C21 A1ISG . . . K 3 3.533 7.695 -49.548 1 69.14 ? C21 A1ISG 201 C 1 HETATM 9 C C22 A1ISG . . . K 3 4.473 7.627 -48.297 1 69.99 ? C22 A1ISG 201 C 1 HETATM 10 C C24 A1ISG . . . K 3 5.067 9.469 -49.615 1 68.69 ? C24 A1ISG 201 C 1 HETATM 11 C C26 A1ISG . . . K 3 5.293 6.308 -48.34 1 71.57 ? C26 A1ISG 201 C 1 HETATM 12 C C30 A1ISG . . . K 3 0.862 1.602 -54.218 1 62.18 ? C30 A1ISG 201 C 1 HETATM 13 C C4 A1ISG . . . K 3 1.007 5.495 -58.928 1 62.74 ? C4 A1ISG 201 C 1 HETATM 14 C C5 A1ISG . . . K 3 1.701 5.046 -57.621 1 62.22 ? C5 A1ISG 201 C 1 HETATM 15 C C6 A1ISG . . . K 3 0.77 4.074 -56.847 1 62.08 ? C6 A1ISG 201 C 1 HETATM 16 F F7 A1ISG . . . K 3 -0.17 4.721 -60.851 1 65.77 ? F7 A1ISG 201 C 1 HETATM 17 F F8 A1ISG . . . K 3 1.596 3.611 -60.228 1 64.11 ? F8 A1ISG 201 C 1 HETATM 18 C C9 A1ISG . . . K 3 1.384 3.576 -55.515 1 62.13 ? C9 A1ISG 201 C 1 HETATM 19 C C10 A1ISG . . . K 3 1.685 4.712 -54.578 1 62.61 ? C10 A1ISG 201 C 1 HETATM 20 N N11 A1ISG . . . K 3 0.437 2.67 -54.894 1 61.82 ? N11 A1ISG 201 C 1 HETATM 21 N N12 A1ISG . . . K 3 2.922 5.228 -54.615 1 63.95 ? N12 A1ISG 201 C 1 HETATM 22 O O13 A1ISG . . . K 3 0.836 5.084 -53.795 1 61.95 ? O13 A1ISG 201 C 1 HETATM 23 S S15 A1ISG . . . K 3 2.293 7.151 -52.845 1 65.34 ? S15 A1ISG 201 C 1 HETATM 24 N N18 A1ISG . . . K 3 4.526 6.71 -53.912 1 65.62 ? N18 A1ISG 201 C 1 HETATM 25 N N20 A1ISG . . . K 3 4.044 8.863 -50.244 1 68.41 ? N20 A1ISG 201 C 1 HETATM 26 N N23 A1ISG . . . K 3 5.345 8.789 -48.48 1 69.33 ? N23 A1ISG 201 C 1 HETATM 27 O O25 A1ISG . . . K 3 5.644 10.479 -50 1 68.21 ? O25 A1ISG 201 C 1 HETATM 28 F F27 A1ISG . . . K 3 6.273 6.308 -47.383 1 71.8 ? F27 A1ISG 201 C 1 HETATM 29 F F28 A1ISG . . . K 3 4.439 5.264 -48.151 1 71.95 ? F28 A1ISG 201 C 1 HETATM 30 F F29 A1ISG . . . K 3 5.851 6.119 -49.57 1 72.11 ? F29 A1ISG 201 C 1 HETATM 31 C C31 A1ISG . . . K 3 -0.195 0.739 -53.637 1 64.13 ? C31 A1ISG 201 C 1 HETATM 32 O O32 A1ISG . . . K 3 2.051 1.377 -54.117 1 61.42 ? O32 A1ISG 201 C 1 HETATM 33 C C33 A1ISG . . . K 3 -0.091 -0.322 -52.831 1 64.91 ? C33 A1ISG 201 C 1 HETATM 34 F F34 A1ISG . . . K 3 -1.45 1.059 -53.96 1 64.95 ? F34 A1ISG 201 C 1 HETATM 35 C C35 A1ISG . . . K 3 1.137 -0.944 -52.258 1 66.11 ? C35 A1ISG 201 C 1 HETATM 36 C C36 A1ISG . . . K 3 1.14 -1.019 -50.701 1 66.59 ? C36 A1ISG 201 C 1 HETATM 37 C C37 A1ISG . . . K 3 0.828 -2.281 -51.538 1 66.68 ? C37 A1ISG 201 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #