data_9H6J # _model_server_result.job_id b4z-uCIIErXWEnVZ6eScYA _model_server_result.datetime_utc '2025-07-21 21:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 9H6J # _exptl.entry_id 9H6J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.076 _cell.angle_gamma 90 _cell.entry_id 9H6J _cell.length_a 60.463 _cell.length_b 136.486 _cell.length_c 87.427 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 80 1_555 A SG CYS 378 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 48 A CYS 82 1_555 A SG CYS 495 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf3 A SG CYS 395 A CYS 429 1_555 A SG CYS 442 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 46 B CYS 80 1_555 B SG CYS 378 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 B SG CYS 48 B CYS 82 1_555 B SG CYS 495 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? disulf ? disulf6 B SG CYS 395 B CYS 429 1_555 B SG CYS 442 B CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A ND2 ASN 240 A ASN 274 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B ND2 ASN 240 B ASN 274 1_555 H C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? metalc ? metalc1 A OD2 ASP 324 A ASP 358 1_555 C MN MN . A MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc2 B OD2 ASP 324 B ASP 358 1_555 G MN MN . B MN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 244 n n C1 O1 NAG sing 245 n n C1 O5 NAG sing 246 n n C1 H1 NAG sing 247 n n C2 C3 NAG sing 248 n n C2 N2 NAG sing 249 n n C2 H2 NAG sing 250 n n C3 C4 NAG sing 251 n n C3 O3 NAG sing 252 n n C3 H3 NAG sing 253 n n C4 C5 NAG sing 254 n n C4 O4 NAG sing 255 n n C4 H4 NAG sing 256 n n C5 C6 NAG sing 257 n n C5 O5 NAG sing 258 n n C5 H5 NAG sing 259 n n C6 O6 NAG sing 260 n n C6 H61 NAG sing 261 n n C6 H62 NAG sing 262 n n C7 C8 NAG sing 263 n n C7 N2 NAG sing 264 n n C7 O7 NAG doub 265 n n C8 H81 NAG sing 266 n n C8 H82 NAG sing 267 n n C8 H83 NAG sing 268 n n N2 HN2 NAG sing 269 n n O1 HO1 NAG sing 270 n n O3 HO3 NAG sing 271 n n O4 HO4 NAG sing 272 n n O6 HO6 NAG sing 273 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9H6J _atom_sites.fract_transf_matrix[1][1] 0.016539 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001761 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 601 602 MN MN . D 3 NAG A 1 602 603 NAG NAG . E 4 ACY A 1 603 701 ACY ACY . F 4 ACY A 1 604 701 ACY ACY . G 2 MN B 1 601 602 MN MN . H 3 NAG B 1 602 603 NAG NAG . I 5 HOH A 1 701 3 HOH HOH . I 5 HOH A 2 702 14 HOH HOH . I 5 HOH A 3 703 5 HOH HOH . I 5 HOH A 4 704 8 HOH HOH . I 5 HOH A 5 705 2 HOH HOH . I 5 HOH A 6 706 11 HOH HOH . I 5 HOH A 7 707 9 HOH HOH . J 5 HOH B 1 701 12 HOH HOH . J 5 HOH B 2 702 7 HOH HOH . J 5 HOH B 3 703 10 HOH HOH . J 5 HOH B 4 704 6 HOH HOH . J 5 HOH B 5 705 1 HOH HOH . J 5 HOH B 6 706 4 HOH HOH . J 5 HOH B 7 707 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 16.492 3.577 58.465 1 158.25 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . D 3 17.516 4.638 58.868 1 138.9 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . D 3 17.186 5.273 60.226 1 128.13 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . D 3 15.71 5.656 60.361 1 131.4 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . D 3 14.897 4.412 60.025 1 144.78 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . D 3 13.411 4.513 60.306 1 146.44 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . D 3 19.772 4.123 57.931 1 161.32 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . D 3 20.985 3.253 58.096 1 150.59 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . D 3 18.825 4.006 58.872 1 154.56 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . D 3 18.037 6.4 60.371 1 118.97 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . D 3 15.362 6.106 61.674 1 118.24 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . D 3 15.147 4.059 58.643 1 153.81 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . D 3 12.629 4.885 59.186 1 149.92 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . D 3 19.664 4.9 56.987 1 162.4 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #