data_9H6L # _model_server_result.job_id r5GeGSzDMdKclRpElCkU7Q _model_server_result.datetime_utc '2025-07-21 17:07:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 9H6L # _exptl.entry_id 9H6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.83 _cell.angle_gamma 90 _cell.entry_id 9H6L _cell.length_a 60.183 _cell.length_b 133.527 _cell.length_c 86.922 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 536 NAG 2 n C NAG 2 C 2 NAG A 537 NAG 2 n C BMA 3 C 3 BMA A 702 BMA 2 n D NAG 1 D 1 NAG B 536 NAG 2 n D NAG 2 D 2 NAG B 702 NAG 2 n D BMA 3 D 3 BMA B 703 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 46 A CYS 80 1_555 A SG CYS 378 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 48 A CYS 82 1_555 A SG CYS 495 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf3 A SG CYS 395 A CYS 429 1_555 A SG CYS 442 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf4 B SG CYS 46 B CYS 80 1_555 B SG CYS 378 B CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf5 B SG CYS 48 B CYS 82 1_555 B SG CYS 495 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? disulf ? disulf6 B SG CYS 395 B CYS 429 1_555 B SG CYS 442 B CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 240 A ASN 274 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 B ND2 ASN 240 B ASN 274 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale5 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale6 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc1 A OD2 ASP 324 A ASP 358 1_555 F MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? metalc ? metalc2 A NE2 HIS 449 A HIS 483 1_555 F MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc3 E O2A UDP . A UDP 601 1_555 F MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc4 E O2B UDP . A UDP 601 1_555 F MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc5 B OD2 ASP 324 B ASP 358 1_555 I MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.796 ? metalc ? metalc6 B NE2 HIS 449 B HIS 483 1_555 I MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc7 H O2A UDP . B UDP 601 1_555 I MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc8 H O3B UDP . B UDP 601 1_555 I MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 9H6L _atom_sites.fract_transf_matrix[1][1] 0.016616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 UDP A 1 601 601 UDP UDP . F 4 MN A 1 602 602 MN MN . G 5 ACY A 1 603 701 ACY ACY . H 3 UDP B 1 601 601 UDP UDP . I 4 MN B 1 602 602 MN MN . J 5 ACY B 1 603 701 ACY ACY . K 6 HOH A 1 701 15 HOH HOH . K 6 HOH A 2 702 19 HOH HOH . K 6 HOH A 3 703 3 HOH HOH . K 6 HOH A 4 704 9 HOH HOH . K 6 HOH A 5 705 2 HOH HOH . K 6 HOH A 6 706 27 HOH HOH . K 6 HOH A 7 707 18 HOH HOH . K 6 HOH A 8 708 12 HOH HOH . K 6 HOH A 9 709 16 HOH HOH . K 6 HOH A 10 710 11 HOH HOH . K 6 HOH A 11 711 8 HOH HOH . K 6 HOH A 12 712 20 HOH HOH . K 6 HOH A 13 713 17 HOH HOH . L 6 HOH B 1 701 21 HOH HOH . L 6 HOH B 2 702 13 HOH HOH . L 6 HOH B 3 703 14 HOH HOH . L 6 HOH B 4 704 22 HOH HOH . L 6 HOH B 5 705 26 HOH HOH . L 6 HOH B 6 706 10 HOH HOH . L 6 HOH B 7 707 25 HOH HOH . L 6 HOH B 8 708 4 HOH HOH . L 6 HOH B 9 709 24 HOH HOH . L 6 HOH B 10 710 7 HOH HOH . L 6 HOH B 11 711 23 HOH HOH . L 6 HOH B 12 712 5 HOH HOH . L 6 HOH B 13 713 6 HOH HOH . L 6 HOH B 14 714 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . G 5 -0.357 1.816 43.072 1 59.79 ? C ACY 603 A 1 HETATM 2 O O ACY . . . G 5 -0.605 1.485 41.859 1 59.05 ? O ACY 603 A 1 HETATM 3 O OXT ACY . . . G 5 -1.161 1.736 44.049 1 58.47 ? OXT ACY 603 A 1 HETATM 4 C CH3 ACY . . . G 5 1.008 2.36 43.384 1 52.25 ? CH3 ACY 603 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #