data_9H7E
#
_model_server_result.job_id            neAx2eF9EMgxzipt4RuE7A 
_model_server_result.datetime_utc      '2025-08-04 14:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9h7e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    9H7E 
#
_exptl.entry_id    9H7E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              199.205 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(pyridin-3-yl)benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9H7E 
_cell.length_a            84.123 
_cell.length_b            41.221 
_cell.length_c            63.481 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9H7E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -41.221 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 66 A GLU 66 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
metalc ? metalc2 A O ASP 99 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc3 A OD1 ASP 99 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc4 C CA CA . A CA 201 1_555 F O HOH . A HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc5 C CA CA . A CA 201 1_555 F O HOH . A HOH 328 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
#
_chem_comp.formula           'C12 H9 N O2' 
_chem_comp.formula_weight    199.205 
_chem_comp.id                PQM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(pyridin-3-yl)benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O14 C13 PQM doub 241 n n 
C09 C08 PQM doub 242 n y 
C09 C10 PQM sing 243 n y 
C04 N05 PQM doub 244 n y 
C04 C03 PQM sing 245 n y 
C08 C07 PQM sing 246 n y 
N05 C06 PQM sing 247 n y 
C13 O15 PQM sing 248 n n 
C13 C10 PQM sing 249 n n 
C10 C11 PQM doub 250 n y 
C07 C03 PQM sing 251 n n 
C07 C12 PQM doub 252 n y 
C03 C02 PQM doub 253 n y 
C06 C01 PQM doub 254 n y 
C11 C12 PQM sing 255 n y 
C02 C01 PQM sing 256 n y 
C01 H1 PQM sing 257 n n 
C02 H2 PQM sing 258 n n 
C04 H3 PQM sing 259 n n 
C06 H4 PQM sing 260 n n 
C08 H5 PQM sing 261 n n 
C09 H6 PQM sing 262 n n 
C11 H7 PQM sing 263 n n 
C12 H8 PQM sing 264 n n 
O15 H9 PQM sing 265 n n 
#
_atom_sites.entry_id                     9H7E 
_atom_sites.fract_transf_matrix[1][1]    0.011887 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02426 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 201 1 CA CA . 
D 3 PQM A 1 202 1 PQM 046 . 
E 3 PQM B 1 201 1 PQM 046 . 
F 4 HOH A 1 301 27 HOH HOH . 
F 4 HOH A 2 302 28 HOH HOH . 
F 4 HOH A 3 303 24 HOH HOH . 
F 4 HOH A 4 304 1 HOH HOH . 
F 4 HOH A 5 305 4 HOH HOH . 
F 4 HOH A 6 306 23 HOH HOH . 
F 4 HOH A 7 307 6 HOH HOH . 
F 4 HOH A 8 308 35 HOH HOH . 
F 4 HOH A 9 309 42 HOH HOH . 
F 4 HOH A 10 310 26 HOH HOH . 
F 4 HOH A 11 311 11 HOH HOH . 
F 4 HOH A 12 312 41 HOH HOH . 
F 4 HOH A 13 313 16 HOH HOH . 
F 4 HOH A 14 314 22 HOH HOH . 
F 4 HOH A 15 315 32 HOH HOH . 
F 4 HOH A 16 316 30 HOH HOH . 
F 4 HOH A 17 317 19 HOH HOH . 
F 4 HOH A 18 318 34 HOH HOH . 
F 4 HOH A 19 319 18 HOH HOH . 
F 4 HOH A 20 320 33 HOH HOH . 
F 4 HOH A 21 321 5 HOH HOH . 
F 4 HOH A 22 322 43 HOH HOH . 
F 4 HOH A 23 323 17 HOH HOH . 
F 4 HOH A 24 324 40 HOH HOH . 
F 4 HOH A 25 325 47 HOH HOH . 
F 4 HOH A 26 326 21 HOH HOH . 
F 4 HOH A 27 327 25 HOH HOH . 
F 4 HOH A 28 328 36 HOH HOH . 
F 4 HOH A 29 329 38 HOH HOH . 
F 4 HOH A 30 330 44 HOH HOH . 
G 4 HOH B 1 301 39 HOH HOH . 
G 4 HOH B 2 302 12 HOH HOH . 
G 4 HOH B 3 303 3 HOH HOH . 
G 4 HOH B 4 304 14 HOH HOH . 
G 4 HOH B 5 305 37 HOH HOH . 
G 4 HOH B 6 306 10 HOH HOH . 
G 4 HOH B 7 307 7 HOH HOH . 
G 4 HOH B 8 308 8 HOH HOH . 
G 4 HOH B 9 309 2 HOH HOH . 
G 4 HOH B 10 310 9 HOH HOH . 
G 4 HOH B 11 311 20 HOH HOH . 
G 4 HOH B 12 312 13 HOH HOH . 
G 4 HOH B 13 313 15 HOH HOH . 
G 4 HOH B 14 314 45 HOH HOH . 
G 4 HOH B 15 315 31 HOH HOH . 
G 4 HOH B 16 316 29 HOH HOH . 
G 4 HOH B 17 317 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 PQM . . . E 3 1.096 -20.75 20.206 0.5 20.68 ? C01 PQM 201 B 1 
HETATM 2 C C02 PQM . . . E 3 1.151 -20.77 21.607 0.5 21.86 ? C02 PQM 201 B 1 
HETATM 3 C C03 PQM . . . E 3 -0.014 -20.61 22.353 0.5 21.62 ? C03 PQM 201 B 1 
HETATM 4 C C04 PQM . . . E 3 -1.203 -20.446 21.638 0.5 22.33 ? C04 PQM 201 B 1 
HETATM 5 C C06 PQM . . . E 3 -0.124 -20.584 19.551 0.5 19.21 ? C06 PQM 201 B 1 
HETATM 6 C C07 PQM . . . E 3 -0.035 -20.621 23.84 0.5 21.76 ? C07 PQM 201 B 1 
HETATM 7 C C08 PQM . . . E 3 -1.148 -21.129 24.485 0.5 23.08 ? C08 PQM 201 B 1 
HETATM 8 C C09 PQM . . . E 3 -1.245 -21.163 25.867 0.5 23.48 ? C09 PQM 201 B 1 
HETATM 9 C C10 PQM . . . E 3 -0.208 -20.69 26.664 0.5 20.79 ? C10 PQM 201 B 1 
HETATM 10 C C11 PQM . . . E 3 0.935 -20.181 26.018 0.5 22.21 ? C11 PQM 201 B 1 
HETATM 11 C C12 PQM . . . E 3 1.005 -20.14 24.625 0.5 21.93 ? C12 PQM 201 B 1 
HETATM 12 C C13 PQM . . . E 3 -0.372 -20.765 28.181 0.5 23.52 ? C13 PQM 201 B 1 
HETATM 13 N N05 PQM . . . E 3 -1.229 -20.443 20.288 0.5 22.74 ? N05 PQM 201 B 1 
HETATM 14 O O14 PQM . . . E 3 0.325 -20.118 28.951 0.5 33.99 ? O14 PQM 201 B 1 
HETATM 15 O O15 PQM . . . E 3 -1.316 -21.566 28.719 0.5 26.03 ? O15 PQM 201 B 1 
#
_model_server_stats.io_time_ms              94 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#