data_9H7G # _model_server_result.job_id Go2OaatprWA-txBYh5j8EA _model_server_result.datetime_utc '2025-08-05 03:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h7g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 9H7G # _exptl.entry_id 9H7G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.157 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1~{H}-indole-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9H7G _cell.length_a 85.12 _cell.length_b 42.18 _cell.length_c 64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H7G _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 66 A GLU 66 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A O ASP 99 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc3 A OD1 ASP 99 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc4 C CA CA . A CA 201 1_555 G O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 C CA CA . A CA 201 1_555 G O HOH . A HOH 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc6 B O PHE 44 B PHE 44 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc7 B OE2 GLU 66 B GLU 66 1_555 E CA CA . B CA 201 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc8 B OD1 ASN 98 B ASN 98 1_555 E CA CA . B CA 201 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc9 E CA CA . B CA 201 1_555 H O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C9 H6 N2' _chem_comp.formula_weight 142.157 _chem_comp.id 98Z _chem_comp.mon_nstd_flag . _chem_comp.name 1~{H}-indole-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 98Z trip 1 n n C02 C03 98Z sing 2 n n C03 C04 98Z doub 3 n y C03 C11 98Z sing 4 n y C04 N05 98Z sing 5 n y N05 C06 98Z sing 6 n y C11 C10 98Z doub 7 n y C11 C06 98Z sing 8 n y C10 C09 98Z sing 9 n y C06 C07 98Z doub 10 n y C09 C08 98Z doub 11 n y C07 C08 98Z sing 12 n y C10 H1 98Z sing 13 n n C04 H2 98Z sing 14 n n N05 H3 98Z sing 15 n n C07 H4 98Z sing 16 n n C08 H5 98Z sing 17 n n C09 H6 98Z sing 18 n n # _atom_sites.entry_id 9H7G _atom_sites.fract_transf_matrix[1][1] 0.011748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 1 CA CA . D 3 98Z A 1 202 2 98Z 013 . E 2 CA B 1 201 1 CA CA . F 3 98Z B 1 202 1 98Z 013 . G 4 HOH A 1 301 52 HOH HOH . G 4 HOH A 2 302 45 HOH HOH . G 4 HOH A 3 303 44 HOH HOH . G 4 HOH A 4 304 9 HOH HOH . G 4 HOH A 5 305 4 HOH HOH . G 4 HOH A 6 306 20 HOH HOH . G 4 HOH A 7 307 27 HOH HOH . G 4 HOH A 8 308 6 HOH HOH . G 4 HOH A 9 309 26 HOH HOH . G 4 HOH A 10 310 31 HOH HOH . G 4 HOH A 11 311 22 HOH HOH . G 4 HOH A 12 312 7 HOH HOH . G 4 HOH A 13 313 1 HOH HOH . G 4 HOH A 14 314 48 HOH HOH . G 4 HOH A 15 315 34 HOH HOH . G 4 HOH A 16 316 11 HOH HOH . G 4 HOH A 17 317 18 HOH HOH . G 4 HOH A 18 318 13 HOH HOH . G 4 HOH A 19 319 29 HOH HOH . G 4 HOH A 20 320 23 HOH HOH . G 4 HOH A 21 321 28 HOH HOH . G 4 HOH A 22 322 35 HOH HOH . G 4 HOH A 23 323 25 HOH HOH . G 4 HOH A 24 324 30 HOH HOH . G 4 HOH A 25 325 16 HOH HOH . G 4 HOH A 26 326 50 HOH HOH . G 4 HOH A 27 327 43 HOH HOH . G 4 HOH A 28 328 37 HOH HOH . G 4 HOH A 29 329 51 HOH HOH . G 4 HOH A 30 330 17 HOH HOH . G 4 HOH A 31 331 41 HOH HOH . H 4 HOH B 1 301 14 HOH HOH . H 4 HOH B 2 302 3 HOH HOH . H 4 HOH B 3 303 47 HOH HOH . H 4 HOH B 4 304 12 HOH HOH . H 4 HOH B 5 305 19 HOH HOH . H 4 HOH B 6 306 39 HOH HOH . H 4 HOH B 7 307 5 HOH HOH . H 4 HOH B 8 308 21 HOH HOH . H 4 HOH B 9 309 15 HOH HOH . H 4 HOH B 10 310 8 HOH HOH . H 4 HOH B 11 311 2 HOH HOH . H 4 HOH B 12 312 24 HOH HOH . H 4 HOH B 13 313 33 HOH HOH . H 4 HOH B 14 314 42 HOH HOH . H 4 HOH B 15 315 40 HOH HOH . H 4 HOH B 16 316 32 HOH HOH . H 4 HOH B 17 317 46 HOH HOH . H 4 HOH B 18 318 38 HOH HOH . H 4 HOH B 19 319 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 98Z . . . D 3 1.077 21.804 -8.668 0.5 25.89 ? C10 98Z 202 A 1 HETATM 2 N N01 98Z . . . D 3 -2.012 22.248 -6.413 0.5 25.36 ? N01 98Z 202 A 1 HETATM 3 C C02 98Z . . . D 3 -1.801 21.909 -7.491 0.5 24.17 ? C02 98Z 202 A 1 HETATM 4 C C03 98Z . . . D 3 -1.547 21.527 -8.708 0.5 25.13 ? C03 98Z 202 A 1 HETATM 5 C C04 98Z . . . D 3 -2.471 21.162 -9.676 0.5 22.25 ? C04 98Z 202 A 1 HETATM 6 N N05 98Z . . . D 3 -1.71 20.875 -10.76 0.5 22.78 ? N05 98Z 202 A 1 HETATM 7 C C06 98Z . . . D 3 -0.393 21.081 -10.561 0.5 18.76 ? C06 98Z 202 A 1 HETATM 8 C C07 98Z . . . D 3 0.714 20.995 -11.393 0.5 21.97 ? C07 98Z 202 A 1 HETATM 9 C C08 98Z . . . D 3 1.989 21.241 -10.84 0.5 25.55 ? C08 98Z 202 A 1 HETATM 10 C C09 98Z . . . D 3 2.179 21.639 -9.521 0.5 24.82 ? C09 98Z 202 A 1 HETATM 11 C C11 98Z . . . D 3 -0.17 21.533 -9.207 0.5 23.79 ? C11 98Z 202 A 1 # _model_server_stats.io_time_ms 174 _model_server_stats.parse_time_ms 318 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 1264 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 11 #