data_9H8T
#
_model_server_result.job_id            QWwzfzdLLBl-izJrCUONZg 
_model_server_result.datetime_utc      '2025-08-01 04:25:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9h8t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"KA","auth_seq_id":300}' 
#
_entry.id    9H8T 
#
_exptl.entry_id    9H8T 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              175.82 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE2/S2 (INORGANIC) CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9H8T 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9H8T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    21-meric 
_pdbx_struct_assembly.oligomeric_count      21 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 X N N 
? 13 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 222 A CYS 222 1_555 B SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 I SG CYS 338 L CYS 338 1_555 I SG CYS 360 L CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 M SG CYS 222 a CYS 222 1_555 M SG CYS 238 a CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf4 T SG CYS 338 l CYS 338 1_555 T SG CYS 360 l CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A SG CYS 121 D CYS 121 1_555 V CAB HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale2 A SG CYS 124 D CYS 124 1_555 V CAC HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
covale ? covale3 L SG CYS 121 d CYS 121 1_555 IA CAB HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale4 L SG CYS 124 d CYS 124 1_555 IA CAC HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? 
metalc ? metalc1 A NE2 HIS 125 D HIS 125 1_555 V FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc2 A NE2 HIS 284 D HIS 284 1_555 W ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 A SD MET 288 D MET 288 1_555 W ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc4 W ZN ZN . D ZN 402 1_555 H NE2 HIS 75 J HIS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc5 B SG CYS 217 A CYS 217 1_555 X FE1 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc6 B ND1 HIS 219 A HIS 219 1_555 X FE2 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc7 B SG CYS 236 A CYS 236 1_555 X FE1 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc8 B ND1 HIS 239 A HIS 239 1_555 X FE2 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc9 H NE2 HIS 83 J HIS 83 1_555 EA FE HEM . J HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc10 H NE2 HIS 97 J HIS 97 1_555 FA FE HEM . J HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? 
metalc ? metalc11 H NE2 HIS 182 J HIS 182 1_555 EA FE HEM . J HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc12 H NE2 HIS 196 J HIS 196 1_555 FA FE HEM . J HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc13 L NE2 HIS 125 d HIS 125 1_555 IA FE HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc14 L NE2 HIS 284 d HIS 284 1_555 JA ZN ZN . d ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc15 L SD MET 288 d MET 288 1_555 JA ZN ZN . d ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc16 JA ZN ZN . d ZN 402 1_555 S NE2 HIS 75 j HIS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc17 M SG CYS 217 a CYS 217 1_555 KA FE1 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc18 M ND1 HIS 219 a HIS 219 1_555 KA FE2 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc19 M SG CYS 236 a CYS 236 1_555 KA FE1 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc20 M ND1 HIS 239 a HIS 239 1_555 KA FE2 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc21 S NE2 HIS 83 j HIS 83 1_555 RA FE HEM . j HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc22 S NE2 HIS 97 j HIS 97 1_555 SA FE HEM . j HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? 
metalc ? metalc23 S NE2 HIS 182 j HIS 182 1_555 RA FE HEM . j HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc24 S NE2 HIS 196 j HIS 196 1_555 SA FE HEM . j HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'Fe2 S2' 
_chem_comp.formula_weight    175.82 
_chem_comp.id                FES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE2/S2 (INORGANIC) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 FES sing 434 n n 
FE1 S2 FES sing 435 n n 
FE2 S1 FES sing 436 n n 
FE2 S2 FES sing 437 n n 
#
_atom_sites.entry_id                     9H8T 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
V 11 HEC D 1 401 401 HEC HEC . 
W 12 ZN D 1 402 1 ZN ZN . 
X 13 FES A 1 300 300 FES FES . 
Y 14 CDL C 1 101 405 CDL CDL . 
Z 15 PC1 E 1 101 407 PC1 PC1 . 
AA 16 AOQ J 1 401 402 AOQ AOQ . 
BA 17 PEE J 1 402 410 PEE PEE . 
CA 17 PEE J 1 403 411 PEE PEE . 
DA 18 AFI J 1 404 412 AFI LIG . 
EA 19 HEM J 1 405 401 HEM HEM . 
FA 19 HEM J 1 406 402 HEM HEM . 
GA 14 CDL L 1 501 401 CDL CDL . 
HA 17 PEE L 1 502 409 PEE PEE . 
IA 11 HEC d 1 401 401 HEC HEC . 
JA 12 ZN d 1 402 1 ZN ZN . 
KA 13 FES a 1 300 300 FES FES . 
LA 14 CDL c 1 101 405 CDL CDL . 
MA 15 PC1 e 1 101 407 PC1 PC1 . 
NA 16 AOQ j 1 401 402 AOQ AOQ . 
OA 17 PEE j 1 402 410 PEE PEE . 
PA 17 PEE j 1 403 411 PEE PEE . 
QA 18 AFI j 1 404 412 AFI LIG . 
RA 19 HEM j 1 405 401 HEM HEM . 
SA 19 HEM j 1 406 402 HEM HEM . 
TA 14 CDL l 1 501 401 CDL CDL . 
UA 17 PEE l 1 502 409 PEE PEE . 
VA 20 HOH J 1 501 2 HOH HOH . 
VA 20 HOH J 2 502 4 HOH HOH . 
VA 20 HOH J 3 503 5 HOH HOH . 
VA 20 HOH J 4 504 3 HOH HOH . 
VA 20 HOH J 5 505 7 HOH HOH . 
VA 20 HOH J 6 506 1 HOH HOH . 
VA 20 HOH J 7 507 6 HOH HOH . 
WA 20 HOH j 1 501 2 HOH HOH . 
WA 20 HOH j 2 502 5 HOH HOH . 
WA 20 HOH j 3 503 4 HOH HOH . 
WA 20 HOH j 4 504 3 HOH HOH . 
WA 20 HOH j 5 505 1 HOH HOH . 
WA 20 HOH j 6 506 6 HOH HOH . 
WA 20 HOH j 7 507 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 FES . . . KA 13 298.542 254.781 333.013 1 39.11 ? FE1 FES 300 a 1 
HETATM 2 FE FE2 FES . . . KA 13 300.055 255.504 330.895 1 37.88 ? FE2 FES 300 a 1 
HETATM 3 S S1 FES . . . KA 13 298.591 253.86 331.011 1 13.61 ? S1 FES 300 a 1 
HETATM 4 S S2 FES . . . KA 13 299.835 256.555 332.82 1 12.46 ? S2 FES 300 a 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    102 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#