data_9H8T # _model_server_result.job_id cW1iQz_harIZ5YLPwoDovQ _model_server_result.datetime_utc '2025-08-01 04:25:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9h8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"NA","auth_seq_id":401}' # _entry.id 9H8T # _exptl.entry_id 9H8T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 366.837 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9H8T _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9H8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 AA N N ? 16 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 222 A CYS 222 1_555 B SG CYS 238 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 I SG CYS 338 L CYS 338 1_555 I SG CYS 360 L CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 M SG CYS 222 a CYS 222 1_555 M SG CYS 238 a CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 T SG CYS 338 l CYS 338 1_555 T SG CYS 360 l CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 121 D CYS 121 1_555 V CAB HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale2 A SG CYS 124 D CYS 124 1_555 V CAC HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? covale ? covale3 L SG CYS 121 d CYS 121 1_555 IA CAB HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale4 L SG CYS 124 d CYS 124 1_555 IA CAC HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc1 A NE2 HIS 125 D HIS 125 1_555 V FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 A NE2 HIS 284 D HIS 284 1_555 W ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc3 A SD MET 288 D MET 288 1_555 W ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc4 W ZN ZN . D ZN 402 1_555 H NE2 HIS 75 J HIS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B SG CYS 217 A CYS 217 1_555 X FE1 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 B ND1 HIS 219 A HIS 219 1_555 X FE2 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc7 B SG CYS 236 A CYS 236 1_555 X FE1 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 B ND1 HIS 239 A HIS 239 1_555 X FE2 FES . A FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 H NE2 HIS 83 J HIS 83 1_555 EA FE HEM . J HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 H NE2 HIS 97 J HIS 97 1_555 FA FE HEM . J HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc11 H NE2 HIS 182 J HIS 182 1_555 EA FE HEM . J HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc12 H NE2 HIS 196 J HIS 196 1_555 FA FE HEM . J HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc13 L NE2 HIS 125 d HIS 125 1_555 IA FE HEC . d HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc14 L NE2 HIS 284 d HIS 284 1_555 JA ZN ZN . d ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 L SD MET 288 d MET 288 1_555 JA ZN ZN . d ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc16 JA ZN ZN . d ZN 402 1_555 S NE2 HIS 75 j HIS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc17 M SG CYS 217 a CYS 217 1_555 KA FE1 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc18 M ND1 HIS 219 a HIS 219 1_555 KA FE2 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc19 M SG CYS 236 a CYS 236 1_555 KA FE1 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 M ND1 HIS 239 a HIS 239 1_555 KA FE2 FES . a FES 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc21 S NE2 HIS 83 j HIS 83 1_555 RA FE HEM . j HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc22 S NE2 HIS 97 j HIS 97 1_555 SA FE HEM . j HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc23 S NE2 HIS 182 j HIS 182 1_555 RA FE HEM . j HEM 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc24 S NE2 HIS 196 j HIS 196 1_555 SA FE HEM . j HEM 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'C22 H19 Cl O3' _chem_comp.formula_weight 366.837 _chem_comp.id AOQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Atovaquone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 AOQ doub 61 n y C7 C6 AOQ sing 62 n y C8 C9 AOQ sing 63 n y O1 C1 AOQ doub 64 n n C6 C5 AOQ doub 65 n y C9 C1 AOQ sing 66 n n C9 C10 AOQ doub 67 n y C1 C2 AOQ sing 68 n n C11 C12 AOQ sing 69 n n C11 C16 AOQ sing 70 n n C12 C13 AOQ sing 71 n n C5 C10 AOQ sing 72 n y C18 C19 AOQ doub 73 n y C18 C17 AOQ sing 74 n y C13 C17 AOQ sing 75 n n C13 C14 AOQ sing 76 n n C10 C4 AOQ sing 77 n n C19 C20 AOQ sing 78 n y C17 C22 AOQ doub 79 n y C20 C21 AOQ doub 80 n y C20 CL AOQ sing 81 n n C2 C16 AOQ sing 82 n n C2 C3 AOQ doub 83 n n C22 C21 AOQ sing 84 n y C16 C15 AOQ sing 85 n n C15 C14 AOQ sing 86 n n C4 C3 AOQ sing 87 n n C4 O2 AOQ doub 88 n n C3 O6 AOQ sing 89 n n C5 H1 AOQ sing 90 n n C6 H2 AOQ sing 91 n n C7 H3 AOQ sing 92 n n C8 H4 AOQ sing 93 n n O6 H5 AOQ sing 94 n n C11 H6 AOQ sing 95 n n C11 H7 AOQ sing 96 n n C12 H8 AOQ sing 97 n n C12 H9 AOQ sing 98 n n C13 H10 AOQ sing 99 n n C14 H11 AOQ sing 100 n n C14 H12 AOQ sing 101 n n C15 H13 AOQ sing 102 n n C15 H14 AOQ sing 103 n n C16 H15 AOQ sing 104 n n C18 H16 AOQ sing 105 n n C19 H17 AOQ sing 106 n n C21 H18 AOQ sing 107 n n C22 H19 AOQ sing 108 n n # _atom_sites.entry_id 9H8T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 11 HEC D 1 401 401 HEC HEC . W 12 ZN D 1 402 1 ZN ZN . X 13 FES A 1 300 300 FES FES . Y 14 CDL C 1 101 405 CDL CDL . Z 15 PC1 E 1 101 407 PC1 PC1 . AA 16 AOQ J 1 401 402 AOQ AOQ . BA 17 PEE J 1 402 410 PEE PEE . CA 17 PEE J 1 403 411 PEE PEE . DA 18 AFI J 1 404 412 AFI LIG . EA 19 HEM J 1 405 401 HEM HEM . FA 19 HEM J 1 406 402 HEM HEM . GA 14 CDL L 1 501 401 CDL CDL . HA 17 PEE L 1 502 409 PEE PEE . IA 11 HEC d 1 401 401 HEC HEC . JA 12 ZN d 1 402 1 ZN ZN . KA 13 FES a 1 300 300 FES FES . LA 14 CDL c 1 101 405 CDL CDL . MA 15 PC1 e 1 101 407 PC1 PC1 . NA 16 AOQ j 1 401 402 AOQ AOQ . OA 17 PEE j 1 402 410 PEE PEE . PA 17 PEE j 1 403 411 PEE PEE . QA 18 AFI j 1 404 412 AFI LIG . RA 19 HEM j 1 405 401 HEM HEM . SA 19 HEM j 1 406 402 HEM HEM . TA 14 CDL l 1 501 401 CDL CDL . UA 17 PEE l 1 502 409 PEE PEE . VA 20 HOH J 1 501 2 HOH HOH . VA 20 HOH J 2 502 4 HOH HOH . VA 20 HOH J 3 503 5 HOH HOH . VA 20 HOH J 4 504 3 HOH HOH . VA 20 HOH J 5 505 7 HOH HOH . VA 20 HOH J 6 506 1 HOH HOH . VA 20 HOH J 7 507 6 HOH HOH . WA 20 HOH j 1 501 2 HOH HOH . WA 20 HOH j 2 502 5 HOH HOH . WA 20 HOH j 3 503 4 HOH HOH . WA 20 HOH j 4 504 3 HOH HOH . WA 20 HOH j 5 505 1 HOH HOH . WA 20 HOH j 6 506 6 HOH HOH . WA 20 HOH j 7 507 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 AOQ . . . NA 16 300.49 265.983 327.016 1 39.22 ? O1 AOQ 401 j 1 HETATM 2 O O2 AOQ . . . NA 16 298.856 261.273 328.915 1 41.96 ? O2 AOQ 401 j 1 HETATM 3 C C1 AOQ . . . NA 16 300.161 264.918 327.529 1 35.84 ? C1 AOQ 401 j 1 HETATM 4 C C2 AOQ . . . NA 16 300.876 263.675 327.196 1 33.94 ? C2 AOQ 401 j 1 HETATM 5 C C3 AOQ . . . NA 16 300.378 262.488 327.625 1 37.04 ? C3 AOQ 401 j 1 HETATM 6 C C4 AOQ . . . NA 16 299.255 262.375 328.553 1 38.53 ? C4 AOQ 401 j 1 HETATM 7 C C5 AOQ . . . NA 16 297.604 263.584 329.956 1 34.38 ? C5 AOQ 401 j 1 HETATM 8 C C6 AOQ . . . NA 16 296.985 264.757 330.353 1 38.05 ? C6 AOQ 401 j 1 HETATM 9 C C7 AOQ . . . NA 16 297.386 265.968 329.831 1 35.77 ? C7 AOQ 401 j 1 HETATM 10 C C8 AOQ . . . NA 16 298.417 266.026 328.908 1 33.26 ? C8 AOQ 401 j 1 HETATM 11 C C9 AOQ . . . NA 16 299.051 264.854 328.498 1 35.97 ? C9 AOQ 401 j 1 HETATM 12 C C10 AOQ . . . NA 16 298.635 263.623 329.019 1 37.49 ? C10 AOQ 401 j 1 HETATM 13 O O6 AOQ . . . NA 16 300.892 261.333 327.215 1 36.26 ? O6 AOQ 401 j 1 HETATM 14 C C11 AOQ . . . NA 16 301.876 264.332 324.979 1 35.96 ? C11 AOQ 401 j 1 HETATM 15 C C12 AOQ . . . NA 16 303.164 264.365 324.166 1 35.59 ? C12 AOQ 401 j 1 HETATM 16 C C13 AOQ . . . NA 16 304.209 265.242 324.855 1 38.59 ? C13 AOQ 401 j 1 HETATM 17 C C14 AOQ . . . NA 16 304.487 264.685 326.252 1 40.02 ? C14 AOQ 401 j 1 HETATM 18 C C15 AOQ . . . NA 16 303.206 264.638 327.08 1 38.35 ? C15 AOQ 401 j 1 HETATM 19 C C16 AOQ . . . NA 16 302.131 263.793 326.388 1 36.42 ? C16 AOQ 401 j 1 HETATM 20 CL CL AOQ . . . NA 16 309.186 266.018 321.541 1 72.43 ? CL AOQ 401 j 1 HETATM 21 C C17 AOQ . . . NA 16 305.462 265.429 324.022 1 40.01 ? C17 AOQ 401 j 1 HETATM 22 C C18 AOQ . . . NA 16 305.384 265.924 322.727 1 42.71 ? C18 AOQ 401 j 1 HETATM 23 C C19 AOQ . . . NA 16 306.521 266.108 321.961 1 45.63 ? C19 AOQ 401 j 1 HETATM 24 C C20 AOQ . . . NA 16 307.748 265.79 322.498 1 53.28 ? C20 AOQ 401 j 1 HETATM 25 C C21 AOQ . . . NA 16 307.86 265.295 323.777 1 48.88 ? C21 AOQ 401 j 1 HETATM 26 C C22 AOQ . . . NA 16 306.714 265.117 324.533 1 43.39 ? C22 AOQ 401 j 1 HETATM 27 H H1 AOQ . . . NA 16 297.288 262.633 330.377 1 34.04 ? H1 AOQ 401 j 1 HETATM 28 H H2 AOQ . . . NA 16 296.176 264.718 331.081 1 33.88 ? H2 AOQ 401 j 1 HETATM 29 H H3 AOQ . . . NA 16 296.891 266.886 330.14 1 34.01 ? H3 AOQ 401 j 1 HETATM 30 H H4 AOQ . . . NA 16 298.733 266.983 328.499 1 33.77 ? H4 AOQ 401 j 1 HETATM 31 H H6 AOQ . . . NA 16 301.436 265.325 325 1 34.97 ? H6 AOQ 401 j 1 HETATM 32 H H7 AOQ . . . NA 16 301.138 263.71 324.479 1 34.33 ? H7 AOQ 401 j 1 HETATM 33 H H8 AOQ . . . NA 16 303.543 263.356 324.017 1 35.69 ? H8 AOQ 401 j 1 HETATM 34 H H9 AOQ . . . NA 16 302.962 264.736 323.164 1 33.04 ? H9 AOQ 401 j 1 HETATM 35 H H10 AOQ . . . NA 16 303.762 266.226 324.986 1 35.5 ? H10 AOQ 401 j 1 HETATM 36 H H11 AOQ . . . NA 16 305.237 265.282 326.767 1 37.85 ? H11 AOQ 401 j 1 HETATM 37 H H12 AOQ . . . NA 16 304.924 263.691 326.182 1 37.91 ? H12 AOQ 401 j 1 HETATM 38 H H13 AOQ . . . NA 16 303.42 264.231 328.066 1 34.49 ? H13 AOQ 401 j 1 HETATM 39 H H14 AOQ . . . NA 16 302.866 265.653 327.269 1 35.45 ? H14 AOQ 401 j 1 HETATM 40 H H15 AOQ . . . NA 16 302.547 262.795 326.274 1 35.5 ? H15 AOQ 401 j 1 HETATM 41 H H16 AOQ . . . NA 16 304.416 266.171 322.295 1 37.87 ? H16 AOQ 401 j 1 HETATM 42 H H17 AOQ . . . NA 16 306.455 266.499 320.947 1 42.32 ? H17 AOQ 401 j 1 HETATM 43 H H18 AOQ . . . NA 16 308.839 265.049 324.183 1 46.1 ? H18 AOQ 401 j 1 HETATM 44 H H19 AOQ . . . NA 16 306.811 264.723 325.542 1 42.26 ? H19 AOQ 401 j 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 128 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #