data_9HBE # _model_server_result.job_id rovl-3L5LMRMiKIMc6Lx2A _model_server_result.datetime_utc '2025-07-27 12:20:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":105}' # _entry.id 9HBE # _exptl.entry_id 9HBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HBE _cell.length_a 83.149 _cell.length_b 83.149 _cell.length_c 157.813 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 273 n n C1 C2 GOL sing 274 n n C1 H11 GOL sing 275 n n C1 H12 GOL sing 276 n n O1 HO1 GOL sing 277 n n C2 O2 GOL sing 278 n n C2 C3 GOL sing 279 n n C2 H2 GOL sing 280 n n O2 HO2 GOL sing 281 n n C3 O3 GOL sing 282 n n C3 H31 GOL sing 283 n n C3 H32 GOL sing 284 n n O3 HO3 GOL sing 285 n n # _atom_sites.entry_id 9HBE _atom_sites.fract_transf_matrix[1][1] 0.012027 _atom_sites.fract_transf_matrix[1][2] 0.006944 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BDF A 1 101 101 BDF BDF . D 2 BDF A 1 102 201 BDF BDF . E 3 7AZ A 1 103 301 7AZ 7AZ . F 3 7AZ A 1 104 401 7AZ 7AZ . G 4 GOL A 1 105 501 GOL GOL . H 2 BDF B 1 201 201 BDF BDF . I 3 7AZ B 1 202 401 7AZ 7AZ . J 3 7AZ B 1 203 501 7AZ 7AZ . K 2 BDF B 1 204 601 BDF BDF . L 4 GOL B 1 205 701 GOL GOL . M 5 HOH A 1 201 150 HOH HOH . M 5 HOH A 2 202 160 HOH HOH . M 5 HOH A 3 203 149 HOH HOH . M 5 HOH A 4 204 266 HOH HOH . M 5 HOH A 5 205 176 HOH HOH . M 5 HOH A 6 206 206 HOH HOH . M 5 HOH A 7 207 158 HOH HOH . M 5 HOH A 8 208 4 HOH HOH . M 5 HOH A 9 209 148 HOH HOH . M 5 HOH A 10 210 229 HOH HOH . M 5 HOH A 11 211 119 HOH HOH . M 5 HOH A 12 212 241 HOH HOH . M 5 HOH A 13 213 187 HOH HOH . M 5 HOH A 14 214 271 HOH HOH . M 5 HOH A 15 215 248 HOH HOH . M 5 HOH A 16 216 21 HOH HOH . M 5 HOH A 17 217 156 HOH HOH . M 5 HOH A 18 218 256 HOH HOH . M 5 HOH A 19 219 56 HOH HOH . M 5 HOH A 20 220 100 HOH HOH . M 5 HOH A 21 221 42 HOH HOH . M 5 HOH A 22 222 57 HOH HOH . M 5 HOH A 23 223 41 HOH HOH . M 5 HOH A 24 224 2 HOH HOH . M 5 HOH A 25 225 29 HOH HOH . M 5 HOH A 26 226 217 HOH HOH . M 5 HOH A 27 227 20 HOH HOH . M 5 HOH A 28 228 234 HOH HOH . M 5 HOH A 29 229 137 HOH HOH . M 5 HOH A 30 230 202 HOH HOH . M 5 HOH A 31 231 104 HOH HOH . M 5 HOH A 32 232 136 HOH HOH . M 5 HOH A 33 233 330 HOH HOH . M 5 HOH A 34 234 37 HOH HOH . M 5 HOH A 35 235 184 HOH HOH . M 5 HOH A 36 236 75 HOH HOH . M 5 HOH A 37 237 270 HOH HOH . M 5 HOH A 38 238 168 HOH HOH . M 5 HOH A 39 239 1 HOH HOH . M 5 HOH A 40 240 73 HOH HOH . M 5 HOH A 41 241 98 HOH HOH . M 5 HOH A 42 242 10 HOH HOH . M 5 HOH A 43 243 27 HOH HOH . M 5 HOH A 44 244 242 HOH HOH . M 5 HOH A 45 245 81 HOH HOH . M 5 HOH A 46 246 38 HOH HOH . M 5 HOH A 47 247 84 HOH HOH . M 5 HOH A 48 248 122 HOH HOH . M 5 HOH A 49 249 249 HOH HOH . M 5 HOH A 50 250 90 HOH HOH . M 5 HOH A 51 251 233 HOH HOH . M 5 HOH A 52 252 92 HOH HOH . M 5 HOH A 53 253 13 HOH HOH . M 5 HOH A 54 254 97 HOH HOH . M 5 HOH A 55 255 12 HOH HOH . M 5 HOH A 56 256 114 HOH HOH . M 5 HOH A 57 257 198 HOH HOH . M 5 HOH A 58 258 69 HOH HOH . M 5 HOH A 59 259 267 HOH HOH . M 5 HOH A 60 260 146 HOH HOH . M 5 HOH A 61 261 74 HOH HOH . M 5 HOH A 62 262 88 HOH HOH . M 5 HOH A 63 263 18 HOH HOH . M 5 HOH A 64 264 25 HOH HOH . M 5 HOH A 65 265 314 HOH HOH . M 5 HOH A 66 266 33 HOH HOH . M 5 HOH A 67 267 64 HOH HOH . M 5 HOH A 68 268 130 HOH HOH . M 5 HOH A 69 269 116 HOH HOH . M 5 HOH A 70 270 153 HOH HOH . M 5 HOH A 71 271 227 HOH HOH . M 5 HOH A 72 272 164 HOH HOH . M 5 HOH A 73 273 174 HOH HOH . M 5 HOH A 74 274 165 HOH HOH . M 5 HOH A 75 275 82 HOH HOH . M 5 HOH A 76 276 32 HOH HOH . M 5 HOH A 77 277 210 HOH HOH . M 5 HOH A 78 278 151 HOH HOH . M 5 HOH A 79 279 126 HOH HOH . M 5 HOH A 80 280 250 HOH HOH . M 5 HOH A 81 281 49 HOH HOH . M 5 HOH A 82 282 26 HOH HOH . M 5 HOH A 83 283 22 HOH HOH . M 5 HOH A 84 284 34 HOH HOH . M 5 HOH A 85 285 127 HOH HOH . M 5 HOH A 86 286 224 HOH HOH . M 5 HOH A 87 287 59 HOH HOH . M 5 HOH A 88 288 76 HOH HOH . M 5 HOH A 89 289 106 HOH HOH . M 5 HOH A 90 290 294 HOH HOH . M 5 HOH A 91 291 166 HOH HOH . M 5 HOH A 92 292 115 HOH HOH . M 5 HOH A 93 293 312 HOH HOH . M 5 HOH A 94 294 113 HOH HOH . M 5 HOH A 95 295 172 HOH HOH . M 5 HOH A 96 296 179 HOH HOH . M 5 HOH A 97 297 167 HOH HOH . M 5 HOH A 98 298 7 HOH HOH . M 5 HOH A 99 299 223 HOH HOH . M 5 HOH A 100 300 58 HOH HOH . M 5 HOH A 101 301 235 HOH HOH . M 5 HOH A 102 302 307 HOH HOH . M 5 HOH A 103 303 157 HOH HOH . M 5 HOH A 104 304 45 HOH HOH . M 5 HOH A 105 305 240 HOH HOH . M 5 HOH A 106 306 290 HOH HOH . M 5 HOH A 107 307 169 HOH HOH . M 5 HOH A 108 308 143 HOH HOH . M 5 HOH A 109 309 279 HOH HOH . M 5 HOH A 110 310 200 HOH HOH . M 5 HOH A 111 311 129 HOH HOH . M 5 HOH A 112 312 252 HOH HOH . M 5 HOH A 113 313 228 HOH HOH . M 5 HOH A 114 314 274 HOH HOH . M 5 HOH A 115 315 331 HOH HOH . M 5 HOH A 116 316 253 HOH HOH . M 5 HOH A 117 317 213 HOH HOH . M 5 HOH A 118 318 265 HOH HOH . M 5 HOH A 119 319 52 HOH HOH . M 5 HOH A 120 320 225 HOH HOH . M 5 HOH A 121 321 163 HOH HOH . M 5 HOH A 122 322 141 HOH HOH . M 5 HOH A 123 323 195 HOH HOH . M 5 HOH A 124 324 230 HOH HOH . M 5 HOH A 125 325 159 HOH HOH . M 5 HOH A 126 326 245 HOH HOH . M 5 HOH A 127 327 77 HOH HOH . M 5 HOH A 128 328 199 HOH HOH . M 5 HOH A 129 329 244 HOH HOH . M 5 HOH A 130 330 105 HOH HOH . M 5 HOH A 131 331 211 HOH HOH . M 5 HOH A 132 332 260 HOH HOH . M 5 HOH A 133 333 177 HOH HOH . M 5 HOH A 134 334 120 HOH HOH . M 5 HOH A 135 335 226 HOH HOH . N 5 HOH B 1 301 152 HOH HOH . N 5 HOH B 2 302 231 HOH HOH . N 5 HOH B 3 303 183 HOH HOH . N 5 HOH B 4 304 201 HOH HOH . N 5 HOH B 5 305 154 HOH HOH . N 5 HOH B 6 306 54 HOH HOH . N 5 HOH B 7 307 284 HOH HOH . N 5 HOH B 8 308 3 HOH HOH . N 5 HOH B 9 309 94 HOH HOH . N 5 HOH B 10 310 155 HOH HOH . N 5 HOH B 11 311 24 HOH HOH . N 5 HOH B 12 312 35 HOH HOH . N 5 HOH B 13 313 140 HOH HOH . N 5 HOH B 14 314 139 HOH HOH . N 5 HOH B 15 315 124 HOH HOH . N 5 HOH B 16 316 95 HOH HOH . N 5 HOH B 17 317 110 HOH HOH . N 5 HOH B 18 318 180 HOH HOH . N 5 HOH B 19 319 171 HOH HOH . N 5 HOH B 20 320 6 HOH HOH . N 5 HOH B 21 321 192 HOH HOH . N 5 HOH B 22 322 80 HOH HOH . N 5 HOH B 23 323 47 HOH HOH . N 5 HOH B 24 324 215 HOH HOH . N 5 HOH B 25 325 309 HOH HOH . N 5 HOH B 26 326 79 HOH HOH . N 5 HOH B 27 327 9 HOH HOH . N 5 HOH B 28 328 53 HOH HOH . N 5 HOH B 29 329 238 HOH HOH . N 5 HOH B 30 330 14 HOH HOH . N 5 HOH B 31 331 30 HOH HOH . N 5 HOH B 32 332 138 HOH HOH . N 5 HOH B 33 333 111 HOH HOH . N 5 HOH B 34 334 125 HOH HOH . N 5 HOH B 35 335 72 HOH HOH . N 5 HOH B 36 336 191 HOH HOH . N 5 HOH B 37 337 118 HOH HOH . N 5 HOH B 38 338 40 HOH HOH . N 5 HOH B 39 339 197 HOH HOH . N 5 HOH B 40 340 188 HOH HOH . N 5 HOH B 41 341 17 HOH HOH . N 5 HOH B 42 342 50 HOH HOH . N 5 HOH B 43 343 15 HOH HOH . N 5 HOH B 44 344 61 HOH HOH . N 5 HOH B 45 345 36 HOH HOH . N 5 HOH B 46 346 102 HOH HOH . N 5 HOH B 47 347 109 HOH HOH . N 5 HOH B 48 348 62 HOH HOH . N 5 HOH B 49 349 31 HOH HOH . N 5 HOH B 50 350 300 HOH HOH . N 5 HOH B 51 351 93 HOH HOH . N 5 HOH B 52 352 178 HOH HOH . N 5 HOH B 53 353 11 HOH HOH . N 5 HOH B 54 354 55 HOH HOH . N 5 HOH B 55 355 170 HOH HOH . N 5 HOH B 56 356 103 HOH HOH . N 5 HOH B 57 357 85 HOH HOH . N 5 HOH B 58 358 117 HOH HOH . N 5 HOH B 59 359 16 HOH HOH . N 5 HOH B 60 360 8 HOH HOH . N 5 HOH B 61 361 28 HOH HOH . N 5 HOH B 62 362 68 HOH HOH . N 5 HOH B 63 363 46 HOH HOH . N 5 HOH B 64 364 87 HOH HOH . N 5 HOH B 65 365 67 HOH HOH . N 5 HOH B 66 366 19 HOH HOH . N 5 HOH B 67 367 123 HOH HOH . N 5 HOH B 68 368 44 HOH HOH . N 5 HOH B 69 369 101 HOH HOH . N 5 HOH B 70 370 182 HOH HOH . N 5 HOH B 71 371 175 HOH HOH . N 5 HOH B 72 372 112 HOH HOH . N 5 HOH B 73 373 83 HOH HOH . N 5 HOH B 74 374 318 HOH HOH . N 5 HOH B 75 375 23 HOH HOH . N 5 HOH B 76 376 107 HOH HOH . N 5 HOH B 77 377 189 HOH HOH . N 5 HOH B 78 378 221 HOH HOH . N 5 HOH B 79 379 43 HOH HOH . N 5 HOH B 80 380 320 HOH HOH . N 5 HOH B 81 381 86 HOH HOH . N 5 HOH B 82 382 121 HOH HOH . N 5 HOH B 83 383 131 HOH HOH . N 5 HOH B 84 384 334 HOH HOH . N 5 HOH B 85 385 208 HOH HOH . N 5 HOH B 86 386 99 HOH HOH . N 5 HOH B 87 387 142 HOH HOH . N 5 HOH B 88 388 70 HOH HOH . N 5 HOH B 89 389 60 HOH HOH . N 5 HOH B 90 390 91 HOH HOH . N 5 HOH B 91 391 135 HOH HOH . N 5 HOH B 92 392 5 HOH HOH . N 5 HOH B 93 393 321 HOH HOH . N 5 HOH B 94 394 65 HOH HOH . N 5 HOH B 95 395 335 HOH HOH . N 5 HOH B 96 396 257 HOH HOH . N 5 HOH B 97 397 262 HOH HOH . N 5 HOH B 98 398 263 HOH HOH . N 5 HOH B 99 399 71 HOH HOH . N 5 HOH B 100 400 134 HOH HOH . N 5 HOH B 101 401 333 HOH HOH . N 5 HOH B 102 402 51 HOH HOH . N 5 HOH B 103 403 247 HOH HOH . N 5 HOH B 104 404 303 HOH HOH . N 5 HOH B 105 405 220 HOH HOH . N 5 HOH B 106 406 144 HOH HOH . N 5 HOH B 107 407 212 HOH HOH . N 5 HOH B 108 408 194 HOH HOH . N 5 HOH B 109 409 181 HOH HOH . N 5 HOH B 110 410 239 HOH HOH . N 5 HOH B 111 411 162 HOH HOH . N 5 HOH B 112 412 251 HOH HOH . N 5 HOH B 113 413 205 HOH HOH . N 5 HOH B 114 414 243 HOH HOH . N 5 HOH B 115 415 173 HOH HOH . N 5 HOH B 116 416 283 HOH HOH . N 5 HOH B 117 417 214 HOH HOH . N 5 HOH B 118 418 48 HOH HOH . N 5 HOH B 119 419 145 HOH HOH . N 5 HOH B 120 420 258 HOH HOH . N 5 HOH B 121 421 204 HOH HOH . N 5 HOH B 122 422 236 HOH HOH . N 5 HOH B 123 423 232 HOH HOH . N 5 HOH B 124 424 287 HOH HOH . N 5 HOH B 125 425 63 HOH HOH . N 5 HOH B 126 426 39 HOH HOH . N 5 HOH B 127 427 272 HOH HOH . N 5 HOH B 128 428 132 HOH HOH . N 5 HOH B 129 429 219 HOH HOH . N 5 HOH B 130 430 96 HOH HOH . N 5 HOH B 131 431 222 HOH HOH . N 5 HOH B 132 432 133 HOH HOH . N 5 HOH B 133 433 311 HOH HOH . N 5 HOH B 134 434 286 HOH HOH . N 5 HOH B 135 435 78 HOH HOH . N 5 HOH B 136 436 209 HOH HOH . N 5 HOH B 137 437 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 22.778 -12.081 1.037 1 27.77 ? C1 GOL 105 A 1 HETATM 2 O O1 GOL . . . G 4 22.866 -13.465 0.823 1 30.85 ? O1 GOL 105 A 1 HETATM 3 C C2 GOL . . . G 4 21.527 -11.808 1.848 1 29.42 ? C2 GOL 105 A 1 HETATM 4 O O2 GOL . . . G 4 21.812 -10.825 2.817 1 53.5 ? O2 GOL 105 A 1 HETATM 5 C C3 GOL . . . G 4 20.416 -11.365 0.911 1 30.9 ? C3 GOL 105 A 1 HETATM 6 O O3 GOL . . . G 4 19.191 -11.74 1.507 1 47.67 ? O3 GOL 105 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #