data_9HDC
#
_model_server_result.job_id            c2NtmcNoYk95JfLSX2zhCQ 
_model_server_result.datetime_utc      '2025-01-06 02:28:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9hdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    9HDC 
#
_exptl.entry_id    9HDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.72 
_cell.angle_gamma         90 
_cell.entry_id            9HDC 
_cell.length_a            114.64 
_cell.length_b            53.58 
_cell.length_c            44.83 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9HDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 131 n n 
S C1 DMS sing 132 n n 
S C2 DMS sing 133 n n 
C1 H11 DMS sing 134 n n 
C1 H12 DMS sing 135 n n 
C1 H13 DMS sing 136 n n 
C2 H21 DMS sing 137 n n 
C2 H22 DMS sing 138 n n 
C2 H23 DMS sing 139 n n 
#
_atom_sites.entry_id                     9HDC 
_atom_sites.fract_transf_matrix[1][1]    0.008723 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001969 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018664 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022868 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 401 401 DMS DMS . 
C 2 DMS A 1 402 402 DMS DMS . 
D 3 A1ITW A 1 403 403 A1ITW LIG . 
E 4 FMT A 1 404 404 FMT FMT . 
F 5 HOH A 1 501 58 HOH HOH . 
F 5 HOH A 2 502 127 HOH HOH . 
F 5 HOH A 3 503 73 HOH HOH . 
F 5 HOH A 4 504 91 HOH HOH . 
F 5 HOH A 5 505 129 HOH HOH . 
F 5 HOH A 6 506 93 HOH HOH . 
F 5 HOH A 7 507 50 HOH HOH . 
F 5 HOH A 8 508 114 HOH HOH . 
F 5 HOH A 9 509 77 HOH HOH . 
F 5 HOH A 10 510 101 HOH HOH . 
F 5 HOH A 11 511 125 HOH HOH . 
F 5 HOH A 12 512 99 HOH HOH . 
F 5 HOH A 13 513 111 HOH HOH . 
F 5 HOH A 14 514 65 HOH HOH . 
F 5 HOH A 15 515 106 HOH HOH . 
F 5 HOH A 16 516 57 HOH HOH . 
F 5 HOH A 17 517 118 HOH HOH . 
F 5 HOH A 18 518 34 HOH HOH . 
F 5 HOH A 19 519 31 HOH HOH . 
F 5 HOH A 20 520 131 HOH HOH . 
F 5 HOH A 21 521 23 HOH HOH . 
F 5 HOH A 22 522 76 HOH HOH . 
F 5 HOH A 23 523 21 HOH HOH . 
F 5 HOH A 24 524 11 HOH HOH . 
F 5 HOH A 25 525 38 HOH HOH . 
F 5 HOH A 26 526 42 HOH HOH . 
F 5 HOH A 27 527 56 HOH HOH . 
F 5 HOH A 28 528 43 HOH HOH . 
F 5 HOH A 29 529 9 HOH HOH . 
F 5 HOH A 30 530 88 HOH HOH . 
F 5 HOH A 31 531 98 HOH HOH . 
F 5 HOH A 32 532 29 HOH HOH . 
F 5 HOH A 33 533 115 HOH HOH . 
F 5 HOH A 34 534 66 HOH HOH . 
F 5 HOH A 35 535 128 HOH HOH . 
F 5 HOH A 36 536 39 HOH HOH . 
F 5 HOH A 37 537 6 HOH HOH . 
F 5 HOH A 38 538 75 HOH HOH . 
F 5 HOH A 39 539 105 HOH HOH . 
F 5 HOH A 40 540 52 HOH HOH . 
F 5 HOH A 41 541 96 HOH HOH . 
F 5 HOH A 42 542 59 HOH HOH . 
F 5 HOH A 43 543 80 HOH HOH . 
F 5 HOH A 44 544 27 HOH HOH . 
F 5 HOH A 45 545 14 HOH HOH . 
F 5 HOH A 46 546 4 HOH HOH . 
F 5 HOH A 47 547 86 HOH HOH . 
F 5 HOH A 48 548 62 HOH HOH . 
F 5 HOH A 49 549 83 HOH HOH . 
F 5 HOH A 50 550 124 HOH HOH . 
F 5 HOH A 51 551 3 HOH HOH . 
F 5 HOH A 52 552 37 HOH HOH . 
F 5 HOH A 53 553 25 HOH HOH . 
F 5 HOH A 54 554 22 HOH HOH . 
F 5 HOH A 55 555 54 HOH HOH . 
F 5 HOH A 56 556 13 HOH HOH . 
F 5 HOH A 57 557 17 HOH HOH . 
F 5 HOH A 58 558 15 HOH HOH . 
F 5 HOH A 59 559 100 HOH HOH . 
F 5 HOH A 60 560 45 HOH HOH . 
F 5 HOH A 61 561 67 HOH HOH . 
F 5 HOH A 62 562 30 HOH HOH . 
F 5 HOH A 63 563 16 HOH HOH . 
F 5 HOH A 64 564 7 HOH HOH . 
F 5 HOH A 65 565 134 HOH HOH . 
F 5 HOH A 66 566 92 HOH HOH . 
F 5 HOH A 67 567 46 HOH HOH . 
F 5 HOH A 68 568 79 HOH HOH . 
F 5 HOH A 69 569 32 HOH HOH . 
F 5 HOH A 70 570 78 HOH HOH . 
F 5 HOH A 71 571 126 HOH HOH . 
F 5 HOH A 72 572 1 HOH HOH . 
F 5 HOH A 73 573 102 HOH HOH . 
F 5 HOH A 74 574 60 HOH HOH . 
F 5 HOH A 75 575 103 HOH HOH . 
F 5 HOH A 76 576 74 HOH HOH . 
F 5 HOH A 77 577 48 HOH HOH . 
F 5 HOH A 78 578 70 HOH HOH . 
F 5 HOH A 79 579 35 HOH HOH . 
F 5 HOH A 80 580 72 HOH HOH . 
F 5 HOH A 81 581 133 HOH HOH . 
F 5 HOH A 82 582 81 HOH HOH . 
F 5 HOH A 83 583 47 HOH HOH . 
F 5 HOH A 84 584 2 HOH HOH . 
F 5 HOH A 85 585 69 HOH HOH . 
F 5 HOH A 86 586 53 HOH HOH . 
F 5 HOH A 87 587 63 HOH HOH . 
F 5 HOH A 88 588 40 HOH HOH . 
F 5 HOH A 89 589 116 HOH HOH . 
F 5 HOH A 90 590 71 HOH HOH . 
F 5 HOH A 91 591 18 HOH HOH . 
F 5 HOH A 92 592 82 HOH HOH . 
F 5 HOH A 93 593 85 HOH HOH . 
F 5 HOH A 94 594 55 HOH HOH . 
F 5 HOH A 95 595 68 HOH HOH . 
F 5 HOH A 96 596 33 HOH HOH . 
F 5 HOH A 97 597 44 HOH HOH . 
F 5 HOH A 98 598 8 HOH HOH . 
F 5 HOH A 99 599 10 HOH HOH . 
F 5 HOH A 100 600 49 HOH HOH . 
F 5 HOH A 101 601 109 HOH HOH . 
F 5 HOH A 102 602 110 HOH HOH . 
F 5 HOH A 103 603 113 HOH HOH . 
F 5 HOH A 104 604 51 HOH HOH . 
F 5 HOH A 105 605 36 HOH HOH . 
F 5 HOH A 106 606 104 HOH HOH . 
F 5 HOH A 107 607 97 HOH HOH . 
F 5 HOH A 108 608 24 HOH HOH . 
F 5 HOH A 109 609 28 HOH HOH . 
F 5 HOH A 110 610 12 HOH HOH . 
F 5 HOH A 111 611 19 HOH HOH . 
F 5 HOH A 112 612 89 HOH HOH . 
F 5 HOH A 113 613 61 HOH HOH . 
F 5 HOH A 114 614 20 HOH HOH . 
F 5 HOH A 115 615 26 HOH HOH . 
F 5 HOH A 116 616 84 HOH HOH . 
F 5 HOH A 117 617 137 HOH HOH . 
F 5 HOH A 118 618 112 HOH HOH . 
F 5 HOH A 119 619 130 HOH HOH . 
F 5 HOH A 120 620 5 HOH HOH . 
F 5 HOH A 121 621 119 HOH HOH . 
F 5 HOH A 122 622 132 HOH HOH . 
F 5 HOH A 123 623 90 HOH HOH . 
F 5 HOH A 124 624 136 HOH HOH . 
F 5 HOH A 125 625 87 HOH HOH . 
F 5 HOH A 126 626 135 HOH HOH . 
F 5 HOH A 127 627 41 HOH HOH . 
F 5 HOH A 128 628 64 HOH HOH . 
F 5 HOH A 129 629 117 HOH HOH . 
F 5 HOH A 130 630 122 HOH HOH . 
F 5 HOH A 131 631 120 HOH HOH . 
F 5 HOH A 132 632 94 HOH HOH . 
F 5 HOH A 133 633 95 HOH HOH . 
F 5 HOH A 134 634 121 HOH HOH . 
F 5 HOH A 135 635 107 HOH HOH . 
F 5 HOH A 136 636 108 HOH HOH . 
F 5 HOH A 137 637 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . B 2 7.19 -28.414 21.424 1 51.58 ? S DMS 401 A 1 
HETATM 2 O O DMS . . . B 2 8.064 -27.396 22.125 1 43.21 ? O DMS 401 A 1 
HETATM 3 C C1 DMS . . . B 2 6.143 -27.561 20.313 1 44.32 ? C1 DMS 401 A 1 
HETATM 4 C C2 DMS . . . B 2 6.004 -28.976 22.657 1 48.91 ? C2 DMS 401 A 1 
HETATM 5 H H11 DMS . . . B 2 5.603 -28.199 19.826 1 46.6 ? H11 DMS 401 A 1 
HETATM 6 H H12 DMS . . . B 2 6.681 -27.052 19.692 1 45.79 ? H12 DMS 401 A 1 
HETATM 7 H H13 DMS . . . B 2 5.568 -26.964 20.81 1 45.78 ? H13 DMS 401 A 1 
HETATM 8 H H21 DMS . . . B 2 6.477 -29.367 23.404 1 49.57 ? H21 DMS 401 A 1 
HETATM 9 H H22 DMS . . . B 2 5.419 -29.637 22.262 1 50.14 ? H22 DMS 401 A 1 
HETATM 10 H H23 DMS . . . B 2 5.48 -28.223 22.965 1 49.35 ? H23 DMS 401 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#