data_9HE3 # _model_server_result.job_id bieQ4tnJn0n-yFN-fxNXmQ _model_server_result.datetime_utc '2025-07-20 21:34:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9he3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 9HE3 # _exptl.entry_id 9HE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 546.929 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-3-[4-[2-azanyl-6-[(1~{R})-1-[4-chloranyl-2-(3-methylpyrazol-1-yl)phenyl]-2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]phenyl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 107.651 _cell.angle_beta 93.143 _cell.angle_gamma 90.151 _cell.entry_id 9HE3 _cell.length_a 47.09 _cell.length_b 57.581 _cell.length_c 62.587 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 197 A HIS 272 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 A NE2 HIS 202 A HIS 277 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 A OE1 GLU 242 A GLU 317 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A OE2 GLU 242 A GLU 317 1_555 C FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 C FE FE . A FE 501 1_555 G O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 C FE FE . A FE 501 1_555 G O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B NE2 HIS 197 B HIS 272 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 B NE2 HIS 202 B HIS 277 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc9 B OE1 GLU 242 B GLU 317 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 B OE2 GLU 242 B GLU 317 1_555 E FE FE . B FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc11 E FE FE . B FE 501 1_555 H O HOH . B HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc12 E FE FE . B FE 501 1_555 H O HOH . B HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C25 H22 Cl F3 N6 O3' _chem_comp.formula_weight 546.929 _chem_comp.id A1IT9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-3-[4-[2-azanyl-6-[(1~{R})-1-[4-chloranyl-2-(3-methylpyrazol-1-yl)phenyl]-2,2,2-tris(fluoranyl)ethoxy]pyrimidin-4-yl]phenyl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LP778902 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O38 C36 A1IT9 doub 1 n n N11 C10 A1IT9 sing 2 n n C05 C06 A1IT9 doub 3 n y C05 C04 A1IT9 sing 4 n y C06 C07 A1IT9 sing 5 n y C03 C04 A1IT9 sing 6 n n C03 C02 A1IT9 sing 7 n n N09 C10 A1IT9 doub 8 n y N09 C08 A1IT9 sing 9 n y C36 C02 A1IT9 sing 10 n n C36 O37 A1IT9 sing 11 n n C04 C35 A1IT9 doub 12 n y C10 N12 A1IT9 sing 13 n y C02 N01 A1IT9 sing 14 n n C07 C08 A1IT9 sing 15 n n C07 C34 A1IT9 doub 16 n y C08 C33 A1IT9 doub 17 n y C35 C34 A1IT9 sing 18 n y N12 C13 A1IT9 doub 19 n y C28 C27 A1IT9 doub 20 n y C28 N23 A1IT9 sing 21 n y C27 C25 A1IT9 sing 22 n y C33 C13 A1IT9 sing 23 n y C13 O14 A1IT9 sing 24 n n N23 C22 A1IT9 sing 25 n n N23 N24 A1IT9 sing 26 n y C21 C22 A1IT9 doub 27 n y C21 C19 A1IT9 sing 28 n y CL20 C19 A1IT9 sing 29 n n C22 C16 A1IT9 sing 30 n y C19 C18 A1IT9 doub 31 n y C25 N24 A1IT9 doub 32 n y C25 C26 A1IT9 sing 33 n n C16 C15 A1IT9 sing 34 n n C16 C17 A1IT9 doub 35 n y C18 C17 A1IT9 sing 36 n y O14 C15 A1IT9 sing 37 n n C15 C29 A1IT9 sing 38 n n C29 F30 A1IT9 sing 39 n n C29 F32 A1IT9 sing 40 n n C29 F31 A1IT9 sing 41 n n C15 H1 A1IT9 sing 42 n n C17 H2 A1IT9 sing 43 n n C21 H3 A1IT9 sing 44 n n C26 H4 A1IT9 sing 45 n n C26 H5 A1IT9 sing 46 n n C26 H6 A1IT9 sing 47 n n C28 H7 A1IT9 sing 48 n n N01 H8 A1IT9 sing 49 n n N01 H9 A1IT9 sing 50 n n C02 H11 A1IT9 sing 51 n n C03 H12 A1IT9 sing 52 n n C03 H13 A1IT9 sing 53 n n C05 H14 A1IT9 sing 54 n n C06 H15 A1IT9 sing 55 n n N11 H16 A1IT9 sing 56 n n N11 H17 A1IT9 sing 57 n n C18 H18 A1IT9 sing 58 n n C27 H19 A1IT9 sing 59 n n C33 H20 A1IT9 sing 60 n n C34 H21 A1IT9 sing 61 n n C35 H22 A1IT9 sing 62 n n O37 H23 A1IT9 sing 63 n n # _atom_sites.entry_id 9HE3 _atom_sites.fract_transf_matrix[1][1] 0.021236 _atom_sites.fract_transf_matrix[1][2] 0.000056 _atom_sites.fract_transf_matrix[1][3] 0.001242 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017367 _atom_sites.fract_transf_matrix[2][3] 0.005538 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 501 1 FE FE . D 3 A1IT9 A 1 502 1 A1IT9 LIG . E 2 FE B 1 501 2 FE FE . F 3 A1IT9 B 1 502 2 A1IT9 LIG . G 4 HOH A 1 601 24 HOH HOH . G 4 HOH A 2 602 14 HOH HOH . G 4 HOH A 3 603 5 HOH HOH . G 4 HOH A 4 604 3 HOH HOH . G 4 HOH A 5 605 12 HOH HOH . G 4 HOH A 6 606 17 HOH HOH . G 4 HOH A 7 607 10 HOH HOH . G 4 HOH A 8 608 19 HOH HOH . G 4 HOH A 9 609 30 HOH HOH . G 4 HOH A 10 610 2 HOH HOH . G 4 HOH A 11 611 44 HOH HOH . G 4 HOH A 12 612 11 HOH HOH . G 4 HOH A 13 613 58 HOH HOH . G 4 HOH A 14 614 39 HOH HOH . G 4 HOH A 15 615 31 HOH HOH . G 4 HOH A 16 616 13 HOH HOH . G 4 HOH A 17 617 43 HOH HOH . G 4 HOH A 18 618 21 HOH HOH . G 4 HOH A 19 619 1 HOH HOH . G 4 HOH A 20 620 22 HOH HOH . G 4 HOH A 21 621 65 HOH HOH . G 4 HOH A 22 622 4 HOH HOH . G 4 HOH A 23 623 53 HOH HOH . G 4 HOH A 24 624 26 HOH HOH . G 4 HOH A 25 625 15 HOH HOH . G 4 HOH A 26 626 32 HOH HOH . G 4 HOH A 27 627 46 HOH HOH . G 4 HOH A 28 628 69 HOH HOH . G 4 HOH A 29 629 71 HOH HOH . G 4 HOH A 30 630 41 HOH HOH . G 4 HOH A 31 631 63 HOH HOH . G 4 HOH A 32 632 67 HOH HOH . G 4 HOH A 33 633 68 HOH HOH . G 4 HOH A 34 634 70 HOH HOH . G 4 HOH A 35 635 51 HOH HOH . G 4 HOH A 36 636 35 HOH HOH . G 4 HOH A 37 637 55 HOH HOH . G 4 HOH A 38 638 61 HOH HOH . G 4 HOH A 39 639 54 HOH HOH . H 4 HOH B 1 601 48 HOH HOH . H 4 HOH B 2 602 36 HOH HOH . H 4 HOH B 3 603 20 HOH HOH . H 4 HOH B 4 604 59 HOH HOH . H 4 HOH B 5 605 23 HOH HOH . H 4 HOH B 6 606 6 HOH HOH . H 4 HOH B 7 607 8 HOH HOH . H 4 HOH B 8 608 38 HOH HOH . H 4 HOH B 9 609 7 HOH HOH . H 4 HOH B 10 610 25 HOH HOH . H 4 HOH B 11 611 9 HOH HOH . H 4 HOH B 12 612 27 HOH HOH . H 4 HOH B 13 613 75 HOH HOH . H 4 HOH B 14 614 76 HOH HOH . H 4 HOH B 15 615 42 HOH HOH . H 4 HOH B 16 616 40 HOH HOH . H 4 HOH B 17 617 18 HOH HOH . H 4 HOH B 18 618 34 HOH HOH . H 4 HOH B 19 619 29 HOH HOH . H 4 HOH B 20 620 16 HOH HOH . H 4 HOH B 21 621 62 HOH HOH . H 4 HOH B 22 622 33 HOH HOH . H 4 HOH B 23 623 56 HOH HOH . H 4 HOH B 24 624 72 HOH HOH . H 4 HOH B 25 625 45 HOH HOH . H 4 HOH B 26 626 52 HOH HOH . H 4 HOH B 27 627 57 HOH HOH . H 4 HOH B 28 628 73 HOH HOH . H 4 HOH B 29 629 66 HOH HOH . H 4 HOH B 30 630 64 HOH HOH . H 4 HOH B 31 631 60 HOH HOH . H 4 HOH B 32 632 47 HOH HOH . H 4 HOH B 33 633 74 HOH HOH . H 4 HOH B 34 634 50 HOH HOH . H 4 HOH B 35 635 37 HOH HOH . H 4 HOH B 36 636 28 HOH HOH . H 4 HOH B 37 637 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1IT9 . . . F 3 -7.204 -28.888 -18.781 1 64.01 ? C10 A1IT9 502 B 1 HETATM 2 N N12 A1IT9 . . . F 3 -6.713 -29.002 -20.027 1 65.84 ? N12 A1IT9 502 B 1 HETATM 3 C C13 A1IT9 . . . F 3 -7.176 -28.278 -21.004 1 68.44 ? C13 A1IT9 502 B 1 HETATM 4 C C15 A1IT9 . . . F 3 -5.789 -29.447 -22.49 1 77.91 ? C15 A1IT9 502 B 1 HETATM 5 C C17 A1IT9 . . . F 3 -3.991 -27.59 -22.268 1 65.06 ? C17 A1IT9 502 B 1 HETATM 6 C C21 A1IT9 . . . F 3 -1.93 -29.398 -21.789 1 64.91 ? C21 A1IT9 502 B 1 HETATM 7 C C22 A1IT9 . . . F 3 -3.237 -29.86 -21.997 1 66.22 ? C22 A1IT9 502 B 1 HETATM 8 C C26 A1IT9 . . . F 3 -5.277 -34.361 -20.682 1 41 ? C26 A1IT9 502 B 1 HETATM 9 C C28 A1IT9 . . . F 3 -2.876 -32.203 -22.743 1 69.06 ? C28 A1IT9 502 B 1 HETATM 10 N N01 A1IT9 . . . F 3 -14.353 -24.093 -20.097 1 53.39 ? N01 A1IT9 502 B 1 HETATM 11 C C02 A1IT9 . . . F 3 -14.425 -23.898 -18.706 1 53.1 ? C02 A1IT9 502 B 1 HETATM 12 C C03 A1IT9 . . . F 3 -13.008 -23.44 -18.161 1 35.06 ? C03 A1IT9 502 B 1 HETATM 13 C C04 A1IT9 . . . F 3 -11.867 -24.471 -18.492 1 43.45 ? C04 A1IT9 502 B 1 HETATM 14 C C05 A1IT9 . . . F 3 -11.792 -25.662 -17.81 1 41.74 ? C05 A1IT9 502 B 1 HETATM 15 C C06 A1IT9 . . . F 3 -10.777 -26.572 -18.103 1 40.02 ? C06 A1IT9 502 B 1 HETATM 16 C C07 A1IT9 . . . F 3 -9.843 -26.265 -19.083 1 40.25 ? C07 A1IT9 502 B 1 HETATM 17 C C08 A1IT9 . . . F 3 -8.679 -27.291 -19.427 1 63.79 ? C08 A1IT9 502 B 1 HETATM 18 N N09 A1IT9 . . . F 3 -8.167 -28.045 -18.495 1 63.51 ? N09 A1IT9 502 B 1 HETATM 19 N N11 A1IT9 . . . F 3 -6.667 -29.698 -17.754 1 63.67 ? N11 A1IT9 502 B 1 HETATM 20 O O14 A1IT9 . . . F 3 -6.649 -28.403 -22.323 1 73.85 ? O14 A1IT9 502 B 1 HETATM 21 C C16 A1IT9 . . . F 3 -4.271 -28.948 -22.247 1 66.06 ? C16 A1IT9 502 B 1 HETATM 22 C C18 A1IT9 . . . F 3 -2.667 -27.132 -22.054 1 63.95 ? C18 A1IT9 502 B 1 HETATM 23 C C19 A1IT9 . . . F 3 -1.652 -28.037 -21.815 1 63.71 ? C19 A1IT9 502 B 1 HETATM 24 CL CL20 A1IT9 . . . F 3 -0.016 -27.472 -21.548 1 165.62 ? CL20 A1IT9 502 B 1 HETATM 25 N N23 A1IT9 . . . F 3 -3.501 -31.331 -21.971 1 67.94 ? N23 A1IT9 502 B 1 HETATM 26 N N24 A1IT9 . . . F 3 -4.384 -31.948 -21.175 1 68.28 ? N24 A1IT9 502 B 1 HETATM 27 C C25 A1IT9 . . . F 3 -4.365 -33.253 -21.416 1 68.93 ? C25 A1IT9 502 B 1 HETATM 28 C C27 A1IT9 . . . F 3 -3.401 -33.495 -22.428 1 69.31 ? C27 A1IT9 502 B 1 HETATM 29 C C29 A1IT9 . . . F 3 -5.987 -30.014 -23.895 1 80.98 ? C29 A1IT9 502 B 1 HETATM 30 F F30 A1IT9 . . . F 3 -5.433 -31.242 -23.984 1 81.52 ? F30 A1IT9 502 B 1 HETATM 31 F F31 A1IT9 . . . F 3 -5.419 -29.189 -24.806 1 82.64 ? F31 A1IT9 502 B 1 HETATM 32 F F32 A1IT9 . . . F 3 -7.373 -30.113 -24.157 1 81.4 ? F32 A1IT9 502 B 1 HETATM 33 C C33 A1IT9 . . . F 3 -8.185 -27.381 -20.744 1 65.37 ? C33 A1IT9 502 B 1 HETATM 34 C C34 A1IT9 . . . F 3 -9.92 -25.062 -19.768 1 42.25 ? C34 A1IT9 502 B 1 HETATM 35 C C35 A1IT9 . . . F 3 -10.919 -24.168 -19.48 1 43.69 ? C35 A1IT9 502 B 1 HETATM 36 C C36 A1IT9 . . . F 3 -15.435 -22.811 -18.395 1 52.48 ? C36 A1IT9 502 B 1 HETATM 37 O O37 A1IT9 . . . F 3 -15.641 -22.469 -17.176 1 51.84 -1 O37 A1IT9 502 B 1 HETATM 38 O O38 A1IT9 . . . F 3 -16.061 -22.247 -19.327 1 52.65 ? O38 A1IT9 502 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #