data_9HFX # _model_server_result.job_id eItBlCcW77PJAJd3uvf27g _model_server_result.datetime_utc '2025-07-20 10:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9HFX # _exptl.entry_id 9HFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 542.018 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{S},2~{S},3~{S},6~{R},7~{R})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-4-[(2~{S})-2-[[2-chloranyl-2,2-bis(fluoranyl)ethanoyl]amino]-3,3-dimethyl-butanoyl]-4-azatricyclo[5.2.1.0^{2,6}]decane-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.3 _cell.angle_gamma 90 _cell.entry_id 9HFX _cell.length_a 114.312 _cell.length_b 53.102 _cell.length_c 45.613 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id A1IUN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1IUN _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.73 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H34 Cl F2 N5 O4' _chem_comp.formula_weight 542.018 _chem_comp.id A1IUN _chem_comp.mon_nstd_flag . _chem_comp.name (1~{S},2~{S},3~{S},6~{R},7~{R})-~{N}-[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-4-[(2~{S})-2-[[2-chloranyl-2,2-bis(fluoranyl)ethanoyl]amino]-3,3-dimethyl-butanoyl]-4-azatricyclo[5.2.1.0^{2,6}]decane-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C11 A1IUN sing 1 n n C15 C14 A1IUN sing 2 n n C15 C16 A1IUN sing 3 n n C11 C10 A1IUN sing 4 n n C11 C12 A1IUN sing 5 n n C10 N4 A1IUN sing 6 n n C25 C22 A1IUN sing 7 n n C24 C22 A1IUN sing 8 n n O4 C20 A1IUN doub 9 n n C14 C13 A1IUN sing 10 n n C16 C17 A1IUN doub 11 n n C22 C19 A1IUN sing 12 n n C22 C23 A1IUN sing 13 n n C12 C13 A1IUN sing 14 n n C12 C9 A1IUN sing 15 n n C19 N5 A1IUN sing 16 n n C19 C18 A1IUN sing 17 n n O1 C1 A1IUN doub 18 n n N4 C18 A1IUN sing 19 n n N4 C9 A1IUN sing 20 n n C20 N5 A1IUN sing 21 n n C20 C21 A1IUN sing 22 n n C13 C17 A1IUN sing 23 n n F2 C21 A1IUN sing 24 n n CL1 C21 A1IUN sing 25 n n C18 O3 A1IUN doub 26 n n C9 C1 A1IUN sing 27 n n C1 N1 A1IUN sing 28 n n C21 F1 A1IUN sing 29 n n N1 C2 A1IUN sing 30 n n C6 C7 A1IUN sing 31 n n C6 C5 A1IUN sing 32 n n C2 C3 A1IUN sing 33 n n C2 C4 A1IUN sing 34 n n N2 C3 A1IUN doub 35 n n C7 N3 A1IUN sing 36 n n C5 C4 A1IUN sing 37 n n C5 C8 A1IUN sing 38 n n N3 C8 A1IUN sing 39 n n C8 O2 A1IUN doub 40 n n C2 H1 A1IUN sing 41 n n C3 H2 A1IUN sing 42 n n C4 H3 A1IUN sing 43 n n C4 H4 A1IUN sing 44 n n C5 H5 A1IUN sing 45 n n C6 H6 A1IUN sing 46 n n C6 H7 A1IUN sing 47 n n C7 H8 A1IUN sing 48 n n C7 H9 A1IUN sing 49 n n C11 H10 A1IUN sing 50 n n C12 H11 A1IUN sing 51 n n C15 H12 A1IUN sing 52 n n C16 H13 A1IUN sing 53 n n C17 H15 A1IUN sing 54 n n C19 H17 A1IUN sing 55 n n C23 H18 A1IUN sing 56 n n C23 H19 A1IUN sing 57 n n C23 H20 A1IUN sing 58 n n C24 H21 A1IUN sing 59 n n C24 H22 A1IUN sing 60 n n C24 H23 A1IUN sing 61 n n N1 H24 A1IUN sing 62 n n N2 H25 A1IUN sing 63 n n N3 H26 A1IUN sing 64 n n C9 H27 A1IUN sing 65 n n C10 H28 A1IUN sing 66 n n C10 H29 A1IUN sing 67 n n C13 H30 A1IUN sing 68 n n C14 H31 A1IUN sing 69 n n C14 H32 A1IUN sing 70 n n N5 H33 A1IUN sing 71 n n C25 H34 A1IUN sing 72 n n C25 H35 A1IUN sing 73 n n C25 H36 A1IUN sing 74 n n # _atom_sites.entry_id 9HFX _atom_sites.fract_transf_matrix[1][1] 0.008748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1IUN A 1 401 1 A1IUN INX . C 3 EDO A 1 402 401 EDO EDO . D 4 HOH A 1 501 35 HOH HOH . D 4 HOH A 2 502 40 HOH HOH . D 4 HOH A 3 503 37 HOH HOH . D 4 HOH A 4 504 39 HOH HOH . D 4 HOH A 5 505 11 HOH HOH . D 4 HOH A 6 506 65 HOH HOH . D 4 HOH A 7 507 19 HOH HOH . D 4 HOH A 8 508 5 HOH HOH . D 4 HOH A 9 509 36 HOH HOH . D 4 HOH A 10 510 29 HOH HOH . D 4 HOH A 11 511 49 HOH HOH . D 4 HOH A 12 512 17 HOH HOH . D 4 HOH A 13 513 60 HOH HOH . D 4 HOH A 14 514 21 HOH HOH . D 4 HOH A 15 515 24 HOH HOH . D 4 HOH A 16 516 66 HOH HOH . D 4 HOH A 17 517 57 HOH HOH . D 4 HOH A 18 518 56 HOH HOH . D 4 HOH A 19 519 4 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 52 HOH HOH . D 4 HOH A 22 522 10 HOH HOH . D 4 HOH A 23 523 2 HOH HOH . D 4 HOH A 24 524 6 HOH HOH . D 4 HOH A 25 525 15 HOH HOH . D 4 HOH A 26 526 47 HOH HOH . D 4 HOH A 27 527 63 HOH HOH . D 4 HOH A 28 528 59 HOH HOH . D 4 HOH A 29 529 23 HOH HOH . D 4 HOH A 30 530 33 HOH HOH . D 4 HOH A 31 531 16 HOH HOH . D 4 HOH A 32 532 1 HOH HOH . D 4 HOH A 33 533 67 HOH HOH . D 4 HOH A 34 534 9 HOH HOH . D 4 HOH A 35 535 32 HOH HOH . D 4 HOH A 36 536 20 HOH HOH . D 4 HOH A 37 537 26 HOH HOH . D 4 HOH A 38 538 25 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 42 HOH HOH . D 4 HOH A 41 541 50 HOH HOH . D 4 HOH A 42 542 14 HOH HOH . D 4 HOH A 43 543 3 HOH HOH . D 4 HOH A 44 544 18 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 31 HOH HOH . D 4 HOH A 47 547 8 HOH HOH . D 4 HOH A 48 548 13 HOH HOH . D 4 HOH A 49 549 30 HOH HOH . D 4 HOH A 50 550 58 HOH HOH . D 4 HOH A 51 551 61 HOH HOH . D 4 HOH A 52 552 22 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 27 HOH HOH . D 4 HOH A 55 555 7 HOH HOH . D 4 HOH A 56 556 28 HOH HOH . D 4 HOH A 57 557 55 HOH HOH . D 4 HOH A 58 558 38 HOH HOH . D 4 HOH A 59 559 69 HOH HOH . D 4 HOH A 60 560 41 HOH HOH . D 4 HOH A 61 561 48 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 44 HOH HOH . D 4 HOH A 64 564 62 HOH HOH . D 4 HOH A 65 565 54 HOH HOH . D 4 HOH A 66 566 45 HOH HOH . D 4 HOH A 67 567 51 HOH HOH . D 4 HOH A 68 568 64 HOH HOH . D 4 HOH A 69 569 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IUN . . . B 2 -14.302 -1.123 0.199 1 24.72 ? C1 A1IUN 401 A 1 HETATM 2 C C2 A1IUN . . . B 2 -12.664 -2.128 1.783 1 28.21 ? C2 A1IUN 401 A 1 HETATM 3 C C3 A1IUN . . . B 2 -12.623 -3.624 2.154 1 32.27 ? C3 A1IUN 401 A 1 HETATM 4 C C4 A1IUN . . . B 2 -12.245 -1.26 2.976 1 25.86 ? C4 A1IUN 401 A 1 HETATM 5 C C5 A1IUN . . . B 2 -11.941 0.21 2.656 1 25.54 ? C5 A1IUN 401 A 1 HETATM 6 C C6 A1IUN . . . B 2 -10.861 0.479 1.617 1 25.47 ? C6 A1IUN 401 A 1 HETATM 7 C C7 A1IUN . . . B 2 -10.104 1.701 2.118 1 25.69 ? C7 A1IUN 401 A 1 HETATM 8 C C8 A1IUN . . . B 2 -11.463 0.97 3.878 1 26.35 ? C8 A1IUN 401 A 1 HETATM 9 C C11 A1IUN . . . B 2 -16.888 -0.933 -2.139 1 20.32 ? C11 A1IUN 401 A 1 HETATM 10 C C12 A1IUN . . . B 2 -16.575 -1.666 -0.806 1 20.49 ? C12 A1IUN 401 A 1 HETATM 11 C C15 A1IUN . . . B 2 -18.443 -1.011 -2.227 1 20.24 ? C15 A1IUN 401 A 1 HETATM 12 C C16 A1IUN . . . B 2 -19.007 -0.166 -1.108 1 20.92 ? C16 A1IUN 401 A 1 HETATM 13 C C17 A1IUN . . . B 2 -18.754 -0.79 0.033 1 20.56 ? C17 A1IUN 401 A 1 HETATM 14 C C18 A1IUN . . . B 2 -15.459 1.725 0.004 1 24.18 ? C18 A1IUN 401 A 1 HETATM 15 C C19 A1IUN . . . B 2 -15.457 3.034 -0.788 1 24.69 ? C19 A1IUN 401 A 1 HETATM 16 C C21 A1IUN . A . B 2 -18.299 5.348 0.254 0.5 41.02 ? C21 A1IUN 401 A 1 HETATM 17 C C21 A1IUN . B . B 2 -18.303 5.314 0.282 0.5 40.89 ? C21 A1IUN 401 A 1 HETATM 18 C C23 A1IUN . . . B 2 -13.301 3.993 0.186 1 21.32 ? C23 A1IUN 401 A 1 HETATM 19 C C24 A1IUN . . . B 2 -13.221 2.505 -1.815 1 21.29 ? C24 A1IUN 401 A 1 HETATM 20 O O1 A1IUN . . . B 2 -13.485 -0.895 -0.692 1 27.82 ? O1 A1IUN 401 A 1 HETATM 21 N N1 A1IUN . . . B 2 -14.002 -1.739 1.352 1 27.07 ? N1 A1IUN 401 A 1 HETATM 22 N N2 A1IUN . . . B 2 -11.601 -4.314 1.909 1 34.75 ? N2 A1IUN 401 A 1 HETATM 23 N N3 A1IUN . . . B 2 -10.476 1.787 3.525 1 26.61 ? N3 A1IUN 401 A 1 HETATM 24 O O2 A1IUN . . . B 2 -11.917 0.836 5.029 1 26.73 ? O2 A1IUN 401 A 1 HETATM 25 C C9 A1IUN . . . B 2 -15.756 -0.688 0.051 1 22.26 ? C9 A1IUN 401 A 1 HETATM 26 N N4 A1IUN . . . B 2 -15.826 0.598 -0.641 1 22.13 ? N4 A1IUN 401 A 1 HETATM 27 C C10 A1IUN . . . B 2 -16.285 0.463 -2.03 1 20.83 ? C10 A1IUN 401 A 1 HETATM 28 C C13 A1IUN . . . B 2 -17.999 -2.057 -0.29 1 20.23 ? C13 A1IUN 401 A 1 HETATM 29 C C14 A1IUN . . . B 2 -18.663 -2.412 -1.631 1 19.98 ? C14 A1IUN 401 A 1 HETATM 30 O O3 A1IUN . . . B 2 -15.127 1.708 1.194 1 24.94 ? O3 A1IUN 401 A 1 HETATM 31 N N5 A1IUN . . . B 2 -16.316 3.986 -0.099 1 29.65 ? N5 A1IUN 401 A 1 HETATM 32 C C20 A1IUN . . . B 2 -17.499 4.373 -0.586 1 37.65 ? C20 A1IUN 401 A 1 HETATM 33 O O4 A1IUN . . . B 2 -17.938 3.999 -1.672 1 37.82 ? O4 A1IUN 401 A 1 HETATM 34 CL CL1 A1IUN . A . B 2 -17.733 6.985 -0.015 0.5 46.7 ? CL1 A1IUN 401 A 1 HETATM 35 CL CL1 A1IUN . B . B 2 -19.987 5.264 -0.171 0.5 45.62 ? CL1 A1IUN 401 A 1 HETATM 36 F F1 A1IUN . A . B 2 -18.2 5.056 1.555 0.5 42.71 ? F1 A1IUN 401 A 1 HETATM 37 F F1 A1IUN . B . B 2 -17.857 6.57 0.168 0.5 44.29 ? F1 A1IUN 401 A 1 HETATM 38 F F2 A1IUN . A . B 2 -19.601 5.284 -0.046 0.5 43.65 ? F2 A1IUN 401 A 1 HETATM 39 F F2 A1IUN . B . B 2 -18.193 4.991 1.575 0.5 42.63 ? F2 A1IUN 401 A 1 HETATM 40 C C22 A1IUN . . . B 2 -14.048 3.581 -1.093 1 21.14 ? C22 A1IUN 401 A 1 HETATM 41 C C25 A1IUN . . . B 2 -14.181 4.797 -2.023 1 21.51 ? C25 A1IUN 401 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #