data_9HFX # _model_server_result.job_id zyIpTDYjua5eocJAk7udQw _model_server_result.datetime_utc '2025-07-20 11:49:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 9HFX # _exptl.entry_id 9HFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.3 _cell.angle_gamma 90 _cell.entry_id 9HFX _cell.length_a 114.312 _cell.length_b 53.102 _cell.length_c 45.613 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id A1IUN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1IUN _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.73 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 157 n n C1 C2 EDO sing 158 n n C1 H11 EDO sing 159 n n C1 H12 EDO sing 160 n n O1 HO1 EDO sing 161 n n C2 O2 EDO sing 162 n n C2 H21 EDO sing 163 n n C2 H22 EDO sing 164 n n O2 HO2 EDO sing 165 n n # _atom_sites.entry_id 9HFX _atom_sites.fract_transf_matrix[1][1] 0.008748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002068 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018832 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022528 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1IUN A 1 401 1 A1IUN INX . C 3 EDO A 1 402 401 EDO EDO . D 4 HOH A 1 501 35 HOH HOH . D 4 HOH A 2 502 40 HOH HOH . D 4 HOH A 3 503 37 HOH HOH . D 4 HOH A 4 504 39 HOH HOH . D 4 HOH A 5 505 11 HOH HOH . D 4 HOH A 6 506 65 HOH HOH . D 4 HOH A 7 507 19 HOH HOH . D 4 HOH A 8 508 5 HOH HOH . D 4 HOH A 9 509 36 HOH HOH . D 4 HOH A 10 510 29 HOH HOH . D 4 HOH A 11 511 49 HOH HOH . D 4 HOH A 12 512 17 HOH HOH . D 4 HOH A 13 513 60 HOH HOH . D 4 HOH A 14 514 21 HOH HOH . D 4 HOH A 15 515 24 HOH HOH . D 4 HOH A 16 516 66 HOH HOH . D 4 HOH A 17 517 57 HOH HOH . D 4 HOH A 18 518 56 HOH HOH . D 4 HOH A 19 519 4 HOH HOH . D 4 HOH A 20 520 12 HOH HOH . D 4 HOH A 21 521 52 HOH HOH . D 4 HOH A 22 522 10 HOH HOH . D 4 HOH A 23 523 2 HOH HOH . D 4 HOH A 24 524 6 HOH HOH . D 4 HOH A 25 525 15 HOH HOH . D 4 HOH A 26 526 47 HOH HOH . D 4 HOH A 27 527 63 HOH HOH . D 4 HOH A 28 528 59 HOH HOH . D 4 HOH A 29 529 23 HOH HOH . D 4 HOH A 30 530 33 HOH HOH . D 4 HOH A 31 531 16 HOH HOH . D 4 HOH A 32 532 1 HOH HOH . D 4 HOH A 33 533 67 HOH HOH . D 4 HOH A 34 534 9 HOH HOH . D 4 HOH A 35 535 32 HOH HOH . D 4 HOH A 36 536 20 HOH HOH . D 4 HOH A 37 537 26 HOH HOH . D 4 HOH A 38 538 25 HOH HOH . D 4 HOH A 39 539 43 HOH HOH . D 4 HOH A 40 540 42 HOH HOH . D 4 HOH A 41 541 50 HOH HOH . D 4 HOH A 42 542 14 HOH HOH . D 4 HOH A 43 543 3 HOH HOH . D 4 HOH A 44 544 18 HOH HOH . D 4 HOH A 45 545 46 HOH HOH . D 4 HOH A 46 546 31 HOH HOH . D 4 HOH A 47 547 8 HOH HOH . D 4 HOH A 48 548 13 HOH HOH . D 4 HOH A 49 549 30 HOH HOH . D 4 HOH A 50 550 58 HOH HOH . D 4 HOH A 51 551 61 HOH HOH . D 4 HOH A 52 552 22 HOH HOH . D 4 HOH A 53 553 53 HOH HOH . D 4 HOH A 54 554 27 HOH HOH . D 4 HOH A 55 555 7 HOH HOH . D 4 HOH A 56 556 28 HOH HOH . D 4 HOH A 57 557 55 HOH HOH . D 4 HOH A 58 558 38 HOH HOH . D 4 HOH A 59 559 69 HOH HOH . D 4 HOH A 60 560 41 HOH HOH . D 4 HOH A 61 561 48 HOH HOH . D 4 HOH A 62 562 68 HOH HOH . D 4 HOH A 63 563 44 HOH HOH . D 4 HOH A 64 564 62 HOH HOH . D 4 HOH A 65 565 54 HOH HOH . D 4 HOH A 66 566 45 HOH HOH . D 4 HOH A 67 567 51 HOH HOH . D 4 HOH A 68 568 64 HOH HOH . D 4 HOH A 69 569 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -4.754 0.76 22.066 0.5 43.43 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 -4.066 1.849 22.693 0.5 44.18 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 -6.256 0.888 22.293 0.5 43.3 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 -6.808 1.885 21.423 0.5 43.01 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 565 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #