data_9HFZ # _model_server_result.job_id Q5WKsSJcE1i4jDp4ZkWDXQ _model_server_result.datetime_utc '2025-09-03 07:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":501}' # _entry.id 9HFZ # _exptl.entry_id 9HFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.628 _cell.angle_gamma 90 _cell.entry_id 9HFZ _cell.length_a 112.91 _cell.length_b 145.91 _cell.length_c 146.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 171 n n P O2P IMP sing 172 n n P O3P IMP sing 173 n n P O5' IMP sing 174 n n O2P HOP2 IMP sing 175 n n O3P HOP3 IMP sing 176 n n O5' C5' IMP sing 177 n n C5' C4' IMP sing 178 n n C5' "H5'1" IMP sing 179 n n C5' "H5'2" IMP sing 180 n n C4' O4' IMP sing 181 n n C4' C3' IMP sing 182 n n C4' H4' IMP sing 183 n n O4' C1' IMP sing 184 n n C3' O3' IMP sing 185 n n C3' C2' IMP sing 186 n n C3' H3' IMP sing 187 n n O3' HO3' IMP sing 188 n n C2' O2' IMP sing 189 n n C2' C1' IMP sing 190 n n C2' H2' IMP sing 191 n n O2' HO2' IMP sing 192 n n C1' N9 IMP sing 193 n n C1' H1' IMP sing 194 n n N9 C8 IMP sing 195 n y N9 C4 IMP sing 196 n y C8 N7 IMP doub 197 n y C8 H8 IMP sing 198 n n N7 C5 IMP sing 199 n y C5 C6 IMP sing 200 n n C5 C4 IMP doub 201 n y C6 O6 IMP doub 202 n n C6 N1 IMP sing 203 n n N1 C2 IMP sing 204 n n N1 HN1 IMP sing 205 n n C2 N3 IMP doub 206 n n C2 H2 IMP sing 207 n n N3 C4 IMP sing 208 n n # _atom_sites.entry_id 9HFZ _atom_sites.fract_transf_matrix[1][1] 0.008857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000873 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 IMP A 1 501 501 IMP IMP . J 2 IMP A 1 502 502 IMP IMP . K 2 IMP B 1 501 501 IMP IMP . L 2 IMP B 1 502 502 IMP IMP . M 2 IMP C 1 501 501 IMP IMP . N 2 IMP C 1 502 502 IMP IMP . O 2 IMP D 1 501 501 IMP IMP . P 2 IMP D 1 502 502 IMP IMP . Q 2 IMP E 1 501 501 IMP IMP . R 2 IMP E 1 502 502 IMP IMP . S 2 IMP F 1 501 501 IMP IMP . T 2 IMP F 1 502 502 IMP IMP . U 2 IMP G 1 501 501 IMP IMP . V 2 IMP G 1 502 502 IMP IMP . W 2 IMP H 1 501 501 IMP IMP . X 2 IMP H 1 502 502 IMP IMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . W 2 -39.542 -14.552 56.617 1 64.73 ? P IMP 501 H 1 HETATM 2 O O1P IMP . . . W 2 -39.763 -13.301 57.437 1 65.28 ? O1P IMP 501 H 1 HETATM 3 O O2P IMP . . . W 2 -38.226 -15.27 56.836 1 61.44 -1 O2P IMP 501 H 1 HETATM 4 O O3P IMP . . . W 2 -39.84 -14.339 55.147 1 69.68 ? O3P IMP 501 H 1 HETATM 5 O O5' IMP . . . W 2 -40.653 -15.58 57.112 1 67.2 ? O5' IMP 501 H 1 HETATM 6 C C5' IMP . . . W 2 -40.7 -16.002 58.467 1 63.17 ? C5' IMP 501 H 1 HETATM 7 C C4' IMP . . . W 2 -41.786 -17.024 58.693 1 62.32 ? C4' IMP 501 H 1 HETATM 8 O O4' IMP . . . W 2 -41.5 -18.233 57.945 1 66.12 ? O4' IMP 501 H 1 HETATM 9 C C3' IMP . . . W 2 -41.958 -17.512 60.122 1 61.78 ? C3' IMP 501 H 1 HETATM 10 O O3' IMP . . . W 2 -42.681 -16.604 60.934 1 63.72 ? O3' IMP 501 H 1 HETATM 11 C C2' IMP . . . W 2 -42.657 -18.853 59.932 1 63.54 ? C2' IMP 501 H 1 HETATM 12 O O2' IMP . . . W 2 -44.047 -18.668 59.702 1 59.87 ? O2' IMP 501 H 1 HETATM 13 C C1' IMP . . . W 2 -42.013 -19.354 58.636 1 66.69 ? C1' IMP 501 H 1 HETATM 14 N N9 IMP . . . W 2 -40.922 -20.318 58.884 1 61.97 ? N9 IMP 501 H 1 HETATM 15 C C8 IMP . . . W 2 -40.054 -20.346 59.943 1 64.34 ? C8 IMP 501 H 1 HETATM 16 N N7 IMP . . . W 2 -39.194 -21.377 59.887 1 62.69 ? N7 IMP 501 H 1 HETATM 17 C C5 IMP . . . W 2 -39.539 -22.039 58.722 1 62.36 ? C5 IMP 501 H 1 HETATM 18 C C6 IMP . . . W 2 -38.991 -23.224 58.116 1 65.09 ? C6 IMP 501 H 1 HETATM 19 O O6 IMP . . . W 2 -38.063 -23.919 58.53 1 68.1 ? O6 IMP 501 H 1 HETATM 20 N N1 IMP . . . W 2 -39.649 -23.542 56.943 1 66.75 ? N1 IMP 501 H 1 HETATM 21 C C2 IMP . . . W 2 -40.681 -22.84 56.417 1 65.4 ? C2 IMP 501 H 1 HETATM 22 N N3 IMP . . . W 2 -41.205 -21.762 56.939 1 61.38 ? N3 IMP 501 H 1 HETATM 23 C C4 IMP . . . W 2 -40.6 -21.4 58.093 1 61.47 ? C4 IMP 501 H 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #