data_9HG4
#
_model_server_result.job_id            x0yYps0tUxQvmoFFu-UqBQ 
_model_server_result.datetime_utc      '2025-04-19 10:46:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9hg4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    9HG4 
#
_exptl.entry_id    9HG4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9HG4 
_cell.length_a            96.238 
_cell.length_b            96.238 
_cell.length_c            262.701 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9HG4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 56 n n 
PB O2B ADP sing 57 n n 
PB O3B ADP sing 58 n n 
PB O3A ADP sing 59 n n 
O2B HOB2 ADP sing 60 n n 
O3B HOB3 ADP sing 61 n n 
PA O1A ADP doub 62 n n 
PA O2A ADP sing 63 n n 
PA O3A ADP sing 64 n n 
PA O5' ADP sing 65 n n 
O2A HOA2 ADP sing 66 n n 
O5' C5' ADP sing 67 n n 
C5' C4' ADP sing 68 n n 
C5' "H5'1" ADP sing 69 n n 
C5' "H5'2" ADP sing 70 n n 
C4' O4' ADP sing 71 n n 
C4' C3' ADP sing 72 n n 
C4' H4' ADP sing 73 n n 
O4' C1' ADP sing 74 n n 
C3' O3' ADP sing 75 n n 
C3' C2' ADP sing 76 n n 
C3' H3' ADP sing 77 n n 
O3' HO3' ADP sing 78 n n 
C2' O2' ADP sing 79 n n 
C2' C1' ADP sing 80 n n 
C2' H2' ADP sing 81 n n 
O2' HO2' ADP sing 82 n n 
C1' N9 ADP sing 83 n n 
C1' H1' ADP sing 84 n n 
N9 C8 ADP sing 85 n y 
N9 C4 ADP sing 86 n y 
C8 N7 ADP doub 87 n y 
C8 H8 ADP sing 88 n n 
N7 C5 ADP sing 89 n y 
C5 C6 ADP sing 90 n y 
C5 C4 ADP doub 91 n y 
C6 N6 ADP sing 92 n n 
C6 N1 ADP doub 93 n y 
N6 HN61 ADP sing 94 n n 
N6 HN62 ADP sing 95 n n 
N1 C2 ADP sing 96 n y 
C2 N3 ADP doub 97 n y 
C2 H2 ADP sing 98 n n 
N3 C4 ADP sing 99 n y 
#
_atom_sites.entry_id                     9HG4 
_atom_sites.fract_transf_matrix[1][1]    0.010391 
_atom_sites.fract_transf_matrix[1][2]    0.005999 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011998 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003807 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1IUG A 1 701 1 A1IUG LI1 . 
C 3 ADP A 1 702 1 ADP ADP . 
D 4 HOH A 1 801 48 HOH HOH . 
D 4 HOH A 2 802 76 HOH HOH . 
D 4 HOH A 3 803 37 HOH HOH . 
D 4 HOH A 4 804 24 HOH HOH . 
D 4 HOH A 5 805 79 HOH HOH . 
D 4 HOH A 6 806 67 HOH HOH . 
D 4 HOH A 7 807 23 HOH HOH . 
D 4 HOH A 8 808 87 HOH HOH . 
D 4 HOH A 9 809 98 HOH HOH . 
D 4 HOH A 10 810 47 HOH HOH . 
D 4 HOH A 11 811 107 HOH HOH . 
D 4 HOH A 12 812 15 HOH HOH . 
D 4 HOH A 13 813 49 HOH HOH . 
D 4 HOH A 14 814 54 HOH HOH . 
D 4 HOH A 15 815 122 HOH HOH . 
D 4 HOH A 16 816 2 HOH HOH . 
D 4 HOH A 17 817 65 HOH HOH . 
D 4 HOH A 18 818 74 HOH HOH . 
D 4 HOH A 19 819 121 HOH HOH . 
D 4 HOH A 20 820 99 HOH HOH . 
D 4 HOH A 21 821 46 HOH HOH . 
D 4 HOH A 22 822 32 HOH HOH . 
D 4 HOH A 23 823 26 HOH HOH . 
D 4 HOH A 24 824 100 HOH HOH . 
D 4 HOH A 25 825 90 HOH HOH . 
D 4 HOH A 26 826 40 HOH HOH . 
D 4 HOH A 27 827 89 HOH HOH . 
D 4 HOH A 28 828 83 HOH HOH . 
D 4 HOH A 29 829 16 HOH HOH . 
D 4 HOH A 30 830 78 HOH HOH . 
D 4 HOH A 31 831 55 HOH HOH . 
D 4 HOH A 32 832 28 HOH HOH . 
D 4 HOH A 33 833 72 HOH HOH . 
D 4 HOH A 34 834 43 HOH HOH . 
D 4 HOH A 35 835 12 HOH HOH . 
D 4 HOH A 36 836 96 HOH HOH . 
D 4 HOH A 37 837 8 HOH HOH . 
D 4 HOH A 38 838 68 HOH HOH . 
D 4 HOH A 39 839 4 HOH HOH . 
D 4 HOH A 40 840 101 HOH HOH . 
D 4 HOH A 41 841 64 HOH HOH . 
D 4 HOH A 42 842 95 HOH HOH . 
D 4 HOH A 43 843 5 HOH HOH . 
D 4 HOH A 44 844 63 HOH HOH . 
D 4 HOH A 45 845 85 HOH HOH . 
D 4 HOH A 46 846 118 HOH HOH . 
D 4 HOH A 47 847 75 HOH HOH . 
D 4 HOH A 48 848 52 HOH HOH . 
D 4 HOH A 49 849 19 HOH HOH . 
D 4 HOH A 50 850 53 HOH HOH . 
D 4 HOH A 51 851 20 HOH HOH . 
D 4 HOH A 52 852 27 HOH HOH . 
D 4 HOH A 53 853 29 HOH HOH . 
D 4 HOH A 54 854 73 HOH HOH . 
D 4 HOH A 55 855 71 HOH HOH . 
D 4 HOH A 56 856 86 HOH HOH . 
D 4 HOH A 57 857 34 HOH HOH . 
D 4 HOH A 58 858 92 HOH HOH . 
D 4 HOH A 59 859 10 HOH HOH . 
D 4 HOH A 60 860 18 HOH HOH . 
D 4 HOH A 61 861 50 HOH HOH . 
D 4 HOH A 62 862 58 HOH HOH . 
D 4 HOH A 63 863 66 HOH HOH . 
D 4 HOH A 64 864 36 HOH HOH . 
D 4 HOH A 65 865 70 HOH HOH . 
D 4 HOH A 66 866 59 HOH HOH . 
D 4 HOH A 67 867 60 HOH HOH . 
D 4 HOH A 68 868 31 HOH HOH . 
D 4 HOH A 69 869 80 HOH HOH . 
D 4 HOH A 70 870 62 HOH HOH . 
D 4 HOH A 71 871 13 HOH HOH . 
D 4 HOH A 72 872 93 HOH HOH . 
D 4 HOH A 73 873 91 HOH HOH . 
D 4 HOH A 74 874 84 HOH HOH . 
D 4 HOH A 75 875 11 HOH HOH . 
D 4 HOH A 76 876 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -17.447 -34.961 5.35 1 41.47 ? PB ADP 702 A 1 
HETATM 2 O O1B ADP . . . C 3 -17.921 -36.118 4.499 1 41.13 ? O1B ADP 702 A 1 
HETATM 3 O O2B ADP . . . C 3 -16.489 -34.035 4.629 1 41.08 ? O2B ADP 702 A 1 
HETATM 4 O O3B ADP . . . C 3 -16.929 -35.389 6.708 1 41.82 ? O3B ADP 702 A 1 
HETATM 5 P PA ADP . . . C 3 -19.366 -33.752 7.218 1 42.61 ? PA ADP 702 A 1 
HETATM 6 O O1A ADP . . . C 3 -19.647 -34.983 7.985 1 42.86 ? O1A ADP 702 A 1 
HETATM 7 O O2A ADP . . . C 3 -18.5 -32.702 7.809 1 42.67 ? O2A ADP 702 A 1 
HETATM 8 O O3A ADP . . . C 3 -18.765 -34.173 5.799 1 41.95 ? O3A ADP 702 A 1 
HETATM 9 O O5' ADP . . . C 3 -20.777 -33.12 6.83 1 42.66 ? O5' ADP 702 A 1 
HETATM 10 C C5' ADP . . . C 3 -20.834 -31.777 6.299 1 42.25 ? C5' ADP 702 A 1 
HETATM 11 C C4' ADP . . . C 3 -22.15 -31.164 6.703 1 41.47 ? C4' ADP 702 A 1 
HETATM 12 O O4' ADP . . . C 3 -23.226 -31.99 6.208 1 40.77 ? O4' ADP 702 A 1 
HETATM 13 C C3' ADP . . . C 3 -22.384 -31.096 8.203 1 41.57 ? C3' ADP 702 A 1 
HETATM 14 O O3' ADP . . . C 3 -21.796 -29.919 8.749 1 42.16 ? O3' ADP 702 A 1 
HETATM 15 C C2' ADP . . . C 3 -23.909 -31.086 8.288 1 40.81 ? C2' ADP 702 A 1 
HETATM 16 O O2' ADP . . . C 3 -24.433 -29.799 7.972 1 40.83 ? O2' ADP 702 A 1 
HETATM 17 C C1' ADP . . . C 3 -24.287 -32.029 7.147 1 39.99 ? C1' ADP 702 A 1 
HETATM 18 N N9 ADP . . . C 3 -24.51 -33.417 7.532 1 38.46 ? N9 ADP 702 A 1 
HETATM 19 C C8 ADP . . . C 3 -23.728 -34.49 7.193 1 38.1 ? C8 ADP 702 A 1 
HETATM 20 N N7 ADP . . . C 3 -24.235 -35.65 7.532 1 37.78 ? N7 ADP 702 A 1 
HETATM 21 C C5 ADP . . . C 3 -25.436 -35.318 8.141 1 37.24 ? C5 ADP 702 A 1 
HETATM 22 C C6 ADP . . . C 3 -26.468 -36.101 8.69 1 36.47 ? C6 ADP 702 A 1 
HETATM 23 N N6 ADP . . . C 3 -26.44 -37.431 8.735 1 36.08 ? N6 ADP 702 A 1 
HETATM 24 N N1 ADP . . . C 3 -27.548 -35.46 9.186 1 36.41 ? N1 ADP 702 A 1 
HETATM 25 C C2 ADP . . . C 3 -27.582 -34.125 9.133 1 36.71 ? C2 ADP 702 A 1 
HETATM 26 N N3 ADP . . . C 3 -26.669 -33.281 8.64 1 37.07 ? N3 ADP 702 A 1 
HETATM 27 C C4 ADP . . . C 3 -25.616 -33.944 8.152 1 37.55 ? C4 ADP 702 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           27 
#