data_9HGF # _model_server_result.job_id o5WpVDSzzjhc8LIq3uHSUA _model_server_result.datetime_utc '2025-04-18 18:37:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9HGF # _exptl.entry_id 9HGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-dimethyl-4-(3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrol-1-yl)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HGF _cell.length_a 92.798 _cell.length_b 92.798 _cell.length_c 70.721 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N2 O2' _chem_comp.formula_weight 310.39 _chem_comp.id A1IUH _chem_comp.mon_nstd_flag . _chem_comp.name 3,5-dimethyl-4-(3-methyl-4-oxidanylidene-5,6,7,8-tetrahydro-2~{H}-cyclohepta[c]pyrrol-1-yl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 A1IUH sing 1 n n C03 C02 A1IUH doub 2 n y C04 C03 A1IUH sing 3 n y O06 C05 A1IUH doub 4 n n N07 C05 A1IUH sing 5 n n C05 C04 A1IUH sing 6 n n C08 C04 A1IUH doub 7 n y C09 C08 A1IUH sing 8 n y C10 C09 A1IUH sing 9 n n C11 C09 A1IUH doub 10 n y C12 C11 A1IUH sing 11 n n C14 N13 A1IUH sing 12 n y C15 C14 A1IUH sing 13 n n N13 C12 A1IUH sing 14 n y C16 C12 A1IUH doub 15 n y C17 C16 A1IUH sing 16 n y C18 C16 A1IUH sing 17 n n C19 C18 A1IUH sing 18 n n C20 C19 A1IUH sing 19 n n C21 C20 A1IUH sing 20 n n C22 C21 A1IUH sing 21 n n O23 C22 A1IUH doub 22 n n C02 C11 A1IUH sing 23 n y C14 C17 A1IUH doub 24 n y C17 C22 A1IUH sing 25 n n C18 H182 A1IUH sing 26 n n C18 H181 A1IUH sing 27 n n C19 H191 A1IUH sing 28 n n C19 H192 A1IUH sing 29 n n C20 H201 A1IUH sing 30 n n C20 H202 A1IUH sing 31 n n C15 H153 A1IUH sing 32 n n C15 H152 A1IUH sing 33 n n C15 H151 A1IUH sing 34 n n C10 H103 A1IUH sing 35 n n C10 H101 A1IUH sing 36 n n C10 H102 A1IUH sing 37 n n C01 H013 A1IUH sing 38 n n C01 H012 A1IUH sing 39 n n C01 H011 A1IUH sing 40 n n C03 H031 A1IUH sing 41 n n C08 H081 A1IUH sing 42 n n C21 H211 A1IUH sing 43 n n C21 H212 A1IUH sing 44 n n N07 H072 A1IUH sing 45 n n N07 H071 A1IUH sing 46 n n N13 H131 A1IUH sing 47 n n # _atom_sites.entry_id 9HGF _atom_sites.fract_transf_matrix[1][1] 0.010776 _atom_sites.fract_transf_matrix[1][2] 0.006222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1IUH A 1 201 201 A1IUH 198 . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 CL A 1 203 1 CL CL . E 5 HOH A 1 301 23 HOH HOH . E 5 HOH A 2 302 31 HOH HOH . E 5 HOH A 3 303 88 HOH HOH . E 5 HOH A 4 304 65 HOH HOH . E 5 HOH A 5 305 54 HOH HOH . E 5 HOH A 6 306 14 HOH HOH . E 5 HOH A 7 307 18 HOH HOH . E 5 HOH A 8 308 20 HOH HOH . E 5 HOH A 9 309 37 HOH HOH . E 5 HOH A 10 310 63 HOH HOH . E 5 HOH A 11 311 64 HOH HOH . E 5 HOH A 12 312 46 HOH HOH . E 5 HOH A 13 313 81 HOH HOH . E 5 HOH A 14 314 66 HOH HOH . E 5 HOH A 15 315 7 HOH HOH . E 5 HOH A 16 316 5 HOH HOH . E 5 HOH A 17 317 36 HOH HOH . E 5 HOH A 18 318 3 HOH HOH . E 5 HOH A 19 319 10 HOH HOH . E 5 HOH A 20 320 6 HOH HOH . E 5 HOH A 21 321 61 HOH HOH . E 5 HOH A 22 322 86 HOH HOH . E 5 HOH A 23 323 71 HOH HOH . E 5 HOH A 24 324 49 HOH HOH . E 5 HOH A 25 325 29 HOH HOH . E 5 HOH A 26 326 9 HOH HOH . E 5 HOH A 27 327 68 HOH HOH . E 5 HOH A 28 328 11 HOH HOH . E 5 HOH A 29 329 32 HOH HOH . E 5 HOH A 30 330 8 HOH HOH . E 5 HOH A 31 331 43 HOH HOH . E 5 HOH A 32 332 73 HOH HOH . E 5 HOH A 33 333 1 HOH HOH . E 5 HOH A 34 334 35 HOH HOH . E 5 HOH A 35 335 85 HOH HOH . E 5 HOH A 36 336 12 HOH HOH . E 5 HOH A 37 337 59 HOH HOH . E 5 HOH A 38 338 24 HOH HOH . E 5 HOH A 39 339 13 HOH HOH . E 5 HOH A 40 340 55 HOH HOH . E 5 HOH A 41 341 87 HOH HOH . E 5 HOH A 42 342 26 HOH HOH . E 5 HOH A 43 343 25 HOH HOH . E 5 HOH A 44 344 2 HOH HOH . E 5 HOH A 45 345 83 HOH HOH . E 5 HOH A 46 346 4 HOH HOH . E 5 HOH A 47 347 19 HOH HOH . E 5 HOH A 48 348 50 HOH HOH . E 5 HOH A 49 349 38 HOH HOH . E 5 HOH A 50 350 62 HOH HOH . E 5 HOH A 51 351 17 HOH HOH . E 5 HOH A 52 352 60 HOH HOH . E 5 HOH A 53 353 74 HOH HOH . E 5 HOH A 54 354 28 HOH HOH . E 5 HOH A 55 355 21 HOH HOH . E 5 HOH A 56 356 15 HOH HOH . E 5 HOH A 57 357 30 HOH HOH . E 5 HOH A 58 358 16 HOH HOH . E 5 HOH A 59 359 44 HOH HOH . E 5 HOH A 60 360 58 HOH HOH . E 5 HOH A 61 361 69 HOH HOH . E 5 HOH A 62 362 34 HOH HOH . E 5 HOH A 63 363 39 HOH HOH . E 5 HOH A 64 364 77 HOH HOH . E 5 HOH A 65 365 75 HOH HOH . E 5 HOH A 66 366 80 HOH HOH . E 5 HOH A 67 367 57 HOH HOH . E 5 HOH A 68 368 67 HOH HOH . E 5 HOH A 69 369 48 HOH HOH . E 5 HOH A 70 370 51 HOH HOH . E 5 HOH A 71 371 33 HOH HOH . E 5 HOH A 72 372 79 HOH HOH . E 5 HOH A 73 373 78 HOH HOH . E 5 HOH A 74 374 76 HOH HOH . E 5 HOH A 75 375 72 HOH HOH . E 5 HOH A 76 376 56 HOH HOH . E 5 HOH A 77 377 41 HOH HOH . E 5 HOH A 78 378 82 HOH HOH . E 5 HOH A 79 379 47 HOH HOH . E 5 HOH A 80 380 27 HOH HOH . E 5 HOH A 81 381 45 HOH HOH . E 5 HOH A 82 382 40 HOH HOH . E 5 HOH A 83 383 70 HOH HOH . E 5 HOH A 84 384 22 HOH HOH . E 5 HOH A 85 385 84 HOH HOH . E 5 HOH A 86 386 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 A1IUH . . . B 2 23.927 -33.083 -10.085 1 32.85 ? C16 A1IUH 201 A 1 HETATM 2 C C17 A1IUH . . . B 2 23.037 -32.133 -9.451 1 34.16 ? C17 A1IUH 201 A 1 HETATM 3 C C18 A1IUH . . . B 2 23.593 -33.954 -11.296 1 31.83 ? C18 A1IUH 201 A 1 HETATM 4 C C19 A1IUH . . . B 2 22.316 -34.89 -11.155 1 34.14 ? C19 A1IUH 201 A 1 HETATM 5 C C20 A1IUH . . . B 2 20.983 -34.126 -11.033 1 34.49 ? C20 A1IUH 201 A 1 HETATM 6 C C15 A1IUH . . . B 2 23.23 -30.455 -7.413 1 32.02 ? C15 A1IUH 201 A 1 HETATM 7 C C11 A1IUH . . . B 2 26.404 -33.659 -9.468 1 33.89 ? C11 A1IUH 201 A 1 HETATM 8 C C12 A1IUH . . . B 2 25.146 -32.98 -9.371 1 30.95 ? C12 A1IUH 201 A 1 HETATM 9 C C10 A1IUH . . . B 2 27.413 -31.374 -10.262 1 30.76 ? C10 A1IUH 201 A 1 HETATM 10 C C01 A1IUH . . . B 2 25.224 -35.845 -8.63 1 33.11 ? C01 A1IUH 201 A 1 HETATM 11 C C02 A1IUH . . . B 2 26.479 -35.036 -9.092 1 36.78 ? C02 A1IUH 201 A 1 HETATM 12 C C03 A1IUH . . . B 2 27.753 -35.64 -9.162 1 32.89 ? C03 A1IUH 201 A 1 HETATM 13 C C04 A1IUH . . . B 2 28.892 -34.904 -9.571 1 35.17 ? C04 A1IUH 201 A 1 HETATM 14 C C05 A1IUH . . . B 2 30.275 -35.555 -9.624 1 37.75 ? C05 A1IUH 201 A 1 HETATM 15 C C08 A1IUH . . . B 2 28.76 -33.533 -9.918 1 37.24 ? C08 A1IUH 201 A 1 HETATM 16 C C09 A1IUH . . . B 2 27.537 -32.865 -9.857 1 34.48 ? C09 A1IUH 201 A 1 HETATM 17 C C14 A1IUH . . . B 2 23.698 -31.514 -8.385 1 31.66 ? C14 A1IUH 201 A 1 HETATM 18 C C21 A1IUH . . . B 2 21.072 -32.59 -11.158 1 35.74 ? C21 A1IUH 201 A 1 HETATM 19 C C22 A1IUH . . . B 2 21.653 -31.923 -9.946 1 33.23 ? C22 A1IUH 201 A 1 HETATM 20 N N07 A1IUH . . . B 2 31.426 -34.855 -10.027 1 34.9 ? N07 A1IUH 201 A 1 HETATM 21 N N13 A1IUH . . . B 2 24.947 -32.054 -8.361 1 29.9 ? N13 A1IUH 201 A 1 HETATM 22 O O06 A1IUH . . . B 2 30.396 -36.744 -9.28 1 43.8 ? O06 A1IUH 201 A 1 HETATM 23 O O23 A1IUH . . . B 2 20.941 -31.13 -9.303 1 32.77 ? O23 A1IUH 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #