data_9HIF # _model_server_result.job_id 8pY1rPqq4CRGEcCZJ-rH1Q _model_server_result.datetime_utc '2025-07-19 07:44:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 9HIF # _exptl.entry_id 9HIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9HIF _cell.length_a 126.089 _cell.length_b 139.024 _cell.length_c 169.902 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 118 A VAL 118 1_555 A N LLP 119 A LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C LLP 119 A LLP 119 1_555 A N ASP 120 A ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C VAL 118 B VAL 118 1_555 B N LLP 119 B LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C LLP 119 B LLP 119 1_555 B N ASP 120 B ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 B SG CYS 52 B CYS 52 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc4 B NE2 HIS 65 B HIS 65 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 9HIF _atom_sites.fract_transf_matrix[1][1] 0.007931 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 602 HEM HEM . D 2 HEM B 1 601 602 HEM HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -4.845 -18.725 -7.36 1 100.01 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 -2.006 -14.953 -6.326 1 130.18 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 -3.172 -12.923 -10.517 1 109.4 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 -6.464 -16.401 -11.269 1 85.34 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 -3.938 -17.906 -6.741 1 104.19 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 -3.199 -18.182 -5.524 1 105.65 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 -2.42 -17.148 -5.249 1 114.59 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 -2.629 -16.166 -6.282 1 119.25 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 -1.46 -17.024 -4.046 1 117.13 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 -3.283 -19.462 -4.682 1 102.15 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 -2.446 -20.531 -5.361 1 103.35 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 -3.211 -21.802 -5.179 1 116.48 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 -3.778 -21.99 -4.072 1 129.19 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 -3.264 -22.614 -6.131 1 124.76 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 -2.063 -14.095 -7.377 1 127.57 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 -1.329 -12.861 -7.479 1 125.25 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 -1.658 -12.292 -8.645 1 123.81 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 -2.596 -13.159 -9.303 1 117.01 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 -0.357 -12.373 -6.379 1 124.13 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 -1.156 -10.961 -9.262 1 123.97 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 -0.221 -10.21 -8.646 1 128.97 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 -4.165 -13.707 -11.077 1 104.67 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 -4.774 -13.447 -12.363 1 110.99 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 -5.677 -14.399 -12.589 1 103.5 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 -5.669 -15.293 -11.444 1 96.37 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 -4.378 -12.237 -13.223 1 121.18 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 -6.621 -14.591 -13.795 1 104.29 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 -6.666 -13.685 -14.773 1 109.23 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 -6.297 -17.345 -10.299 1 86.77 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 -7.015 -18.579 -10.181 1 85.77 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 -6.567 -19.223 -9.097 1 95.59 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 -5.55 -18.421 -8.482 1 97.81 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 -8.136 -19.084 -11.124 1 86.14 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 -7.087 -20.591 -8.59 1 100.75 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 -8.086 -20.253 -7.481 1 107.03 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 -8.234 -21.379 -6.493 1 108.07 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 -7.482 -22.393 -6.572 1 111.14 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 -9.119 -21.246 -5.607 1 106 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 -3.564 -16.659 -7.172 1 108.25 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 -2.844 -14.26 -8.506 1 116.79 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 -4.73 -14.855 -10.537 1 99.58 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 -5.407 -17.287 -9.248 1 96.98 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 -4.004 -15.887 -8.964 1 104.12 ? FE HEM 601 A 1 HETATM 44 H HHB HEM . . . C 2 -1.482 -14.682 -5.544 1 148.5 ? HHB HEM 601 A 1 HETATM 45 H HHC HEM . . . C 2 -2.86 -12.147 -11.028 1 130.47 ? HHC HEM 601 A 1 HETATM 46 H HHD HEM . . . C 2 -7.212 -16.521 -11.891 1 111.8 ? HHD HEM 601 A 1 HETATM 47 H HMA HEM . . . C 2 -1.005 -16.157 -4.079 1 134.45 ? HMA HEM 601 A 1 HETATM 48 H HMAA HEM . . . C 2 -0.794 -17.743 -4.084 1 134.45 ? HMAA HEM 601 A 1 HETATM 49 H HMAB HEM . . . C 2 -1.969 -17.095 -3.212 1 134.45 ? HMAB HEM 601 A 1 HETATM 50 H HAA HEM . . . C 2 -4.205 -19.756 -4.623 1 122.97 ? HAA HEM 601 A 1 HETATM 51 H HAAA HEM . . . C 2 -2.939 -19.293 -3.791 1 122.97 ? HAAA HEM 601 A 1 HETATM 52 H HBA HEM . . . C 2 -1.573 -20.596 -4.943 1 124.79 ? HBA HEM 601 A 1 HETATM 53 H HBAA HEM . . . C 2 -2.339 -20.331 -6.304 1 124.79 ? HBAA HEM 601 A 1 HETATM 54 H HMB HEM . . . C 2 -0.571 -12.811 -5.54 1 138.97 ? HMB HEM 601 A 1 HETATM 55 H HMBA HEM . . . C 2 -0.443 -11.413 -6.273 1 138.97 ? HMBA HEM 601 A 1 HETATM 56 H HMBB HEM . . . C 2 0.554 -12.59 -6.632 1 138.97 ? HMBB HEM 601 A 1 HETATM 57 H HAB HEM . . . C 2 -1.518 -10.666 -10.1 1 140.66 ? HAB HEM 601 A 1 HETATM 58 H HBB HEM . . . C 2 0.078 -9.38 -9.051 1 143.62 ? HBB HEM 601 A 1 HETATM 59 H HBBA HEM . . . C 2 0.152 -10.498 -7.799 1 143.62 ? HBBA HEM 601 A 1 HETATM 60 H HMC HEM . . . C 2 -4.368 -12.494 -14.158 1 144.53 ? HMC HEM 601 A 1 HETATM 61 H HMCA HEM . . . C 2 -3.495 -11.93 -12.963 1 144.53 ? HMCA HEM 601 A 1 HETATM 62 H HMCB HEM . . . C 2 -5.02 -11.522 -13.091 1 144.53 ? HMCB HEM 601 A 1 HETATM 63 H HAC HEM . . . C 2 -7.181 -15.369 -13.841 1 131.36 ? HAC HEM 601 A 1 HETATM 64 H HBC HEM . . . C 2 -7.262 -13.815 -15.527 1 136.28 ? HBC HEM 601 A 1 HETATM 65 H HBCA HEM . . . C 2 -6.101 -12.897 -14.731 1 136.28 ? HBCA HEM 601 A 1 HETATM 66 H HMD HEM . . . C 2 -8.058 -20.055 -11.233 1 115.06 ? HMD HEM 601 A 1 HETATM 67 H HMDA HEM . . . C 2 -8.049 -18.649 -11.997 1 115.06 ? HMDA HEM 601 A 1 HETATM 68 H HMDB HEM . . . C 2 -9.01 -18.869 -10.737 1 115.06 ? HMDB HEM 601 A 1 HETATM 69 H HAD HEM . . . C 2 -6.357 -21.124 -8.239 1 127.95 ? HAD HEM 601 A 1 HETATM 70 H HADA HEM . . . C 2 -7.526 -21.075 -9.307 1 127.95 ? HADA HEM 601 A 1 HETATM 71 H HBD HEM . . . C 2 -8.95 -20.073 -7.883 1 133.63 ? HBD HEM 601 A 1 HETATM 72 H HBDA HEM . . . C 2 -7.776 -19.463 -7.011 1 133.63 ? HBDA HEM 601 A 1 HETATM 73 H HHA HEM . . . C 2 -4.999 -19.606 -6.96 1 123.85 ? HHA HEM 601 A 1 # _model_server_stats.io_time_ms 199 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 73 #