data_9HIF
#
_model_server_result.job_id            mSqVzNBuU1ALoutzKqYLiQ 
_model_server_result.datetime_utc      '2025-07-18 03:43:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9hif 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    9HIF 
#
_exptl.entry_id    9HIF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9HIF 
_cell.length_a            126.089 
_cell.length_b            139.024 
_cell.length_c            169.902 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9HIF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 118 A VAL 118 1_555 A N LLP 119 A LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C LLP 119 A LLP 119 1_555 A N ASP 120 A ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C VAL 118 B VAL 118 1_555 B N LLP 119 B LLP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C LLP 119 B LLP 119 1_555 B N ASP 120 B ASP 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A SG CYS 52 A CYS 52 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? 
metalc ? metalc2 A NE2 HIS 65 A HIS 65 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc3 B SG CYS 52 B CYS 52 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc4 B NE2 HIS 65 B HIS 65 1_555 D FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     9HIF 
_atom_sites.fract_transf_matrix[1][1]    0.007931 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007193 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005886 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 602 HEM HEM . 
D 2 HEM B 1 601 602 HEM HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 -6.553 -13.69 -71.581 1 117.26 ? CHA HEM 601 B 1 
HETATM 2 C CHB HEM . . . D 2 -2.041 -12.186 -72.422 1 109.21 ? CHB HEM 601 B 1 
HETATM 3 C CHC HEM . . . D 2 -0.629 -14.071 -68.232 1 91.28 ? CHC HEM 601 B 1 
HETATM 4 C CHD HEM . . . D 2 -5.002 -16.061 -67.668 1 106.83 ? CHD HEM 601 B 1 
HETATM 5 C C1A HEM . . . D 2 -5.465 -13.079 -72.148 1 110.61 ? C1A HEM 601 B 1 
HETATM 6 C C2A HEM . . . D 2 -5.455 -12.262 -73.346 1 113.1 ? C2A HEM 601 B 1 
HETATM 7 C C3A HEM . . . D 2 -4.217 -11.846 -73.571 1 115.41 ? C3A HEM 601 B 1 
HETATM 8 C C4A HEM . . . D 2 -3.387 -12.383 -72.522 1 111.7 ? C4A HEM 601 B 1 
HETATM 9 C CMA HEM . . . D 2 -3.738 -10.949 -74.734 1 110.65 ? CMA HEM 601 B 1 
HETATM 10 C CAA HEM . . . D 2 -6.679 -11.914 -74.207 1 115.9 ? CAA HEM 601 B 1 
HETATM 11 C CBA HEM . . . D 2 -7.424 -10.804 -73.486 1 126.46 ? CBA HEM 601 B 1 
HETATM 12 C CGA HEM . . . D 2 -8.881 -11.098 -73.688 1 141.12 ? CGA HEM 601 B 1 
HETATM 13 O O1A HEM . . . D 2 -9.245 -11.51 -74.828 1 165.26 ? O1A HEM 601 B 1 
HETATM 14 O O2A HEM . . . D 2 -9.677 -10.915 -72.727 1 148.57 ? O2A HEM 601 B 1 
HETATM 15 C C1B HEM . . . D 2 -1.287 -12.556 -71.354 1 98.21 ? C1B HEM 601 B 1 
HETATM 16 C C2B HEM . . . D 2 0.114 -12.268 -71.193 1 94.41 ? C2B HEM 601 B 1 
HETATM 17 C C3B HEM . . . D 2 0.501 -12.801 -70.028 1 96.24 ? C3B HEM 601 B 1 
HETATM 18 C C4B HEM . . . D 2 -0.641 -13.419 -69.429 1 96.35 ? C4B HEM 601 B 1 
HETATM 19 C CMB HEM . . . D 2 0.93 -11.482 -72.251 1 95.04 ? CMB HEM 601 B 1 
HETATM 20 C CAB HEM . . . D 2 1.895 -12.789 -69.357 1 91.37 ? CAB HEM 601 B 1 
HETATM 21 C CBB HEM . . . D 2 2.94 -12.136 -69.918 1 87.46 ? CBB HEM 601 B 1 
HETATM 22 C C1C HEM . . . D 2 -1.707 -14.763 -67.715 1 94.47 ? C1C HEM 601 B 1 
HETATM 23 C C2C HEM . . . D 2 -1.698 -15.451 -66.443 1 105.14 ? C2C HEM 601 B 1 
HETATM 24 C C3C HEM . . . D 2 -2.901 -15.993 -66.269 1 116.15 ? C3C HEM 601 B 1 
HETATM 25 C C4C HEM . . . D 2 -3.706 -15.669 -67.435 1 112.14 ? C4C HEM 601 B 1 
HETATM 26 C CMC HEM . . . D 2 -0.459 -15.478 -65.532 1 110.81 ? CMC HEM 601 B 1 
HETATM 27 C CAC HEM . . . D 2 -3.426 -16.848 -65.095 1 115.56 ? CAC HEM 601 B 1 
HETATM 28 C CBC HEM . . . D 2 -2.614 -17.219 -64.099 1 111.86 ? CBC HEM 601 B 1 
HETATM 29 C C1D HEM . . . D 2 -5.813 -15.58 -68.655 1 96.63 ? C1D HEM 601 B 1 
HETATM 30 C C2D HEM . . . D 2 -7.209 -15.863 -68.833 1 89.92 ? C2D HEM 601 B 1 
HETATM 31 C C3D HEM . . . D 2 -7.634 -15.204 -69.916 1 96.99 ? C3D HEM 601 B 1 
HETATM 32 C C4D HEM . . . D 2 -6.529 -14.485 -70.477 1 110.28 ? C4D HEM 601 B 1 
HETATM 33 C CMD HEM . . . D 2 -8.09 -16.787 -67.954 1 93.53 ? CMD HEM 601 B 1 
HETATM 34 C CAD HEM . . . D 2 -9.074 -15.244 -70.48 1 97.06 ? CAD HEM 601 B 1 
HETATM 35 C CBD HEM . . . D 2 -9.052 -16.26 -71.62 1 97.93 ? CBD HEM 601 B 1 
HETATM 36 C CGD HEM . . . D 2 -10.128 -15.974 -72.624 1 99.84 ? CGD HEM 601 B 1 
HETATM 37 O O1D HEM . . . D 2 -10.806 -14.918 -72.533 1 84.24 ? O1D HEM 601 B 1 
HETATM 38 O O2D HEM . . . D 2 -10.28 -16.808 -73.541 1 114.29 ? O2D HEM 601 B 1 
HETATM 39 N NA HEM . . . D 2 -4.18 -13.131 -71.675 1 101.83 ? NA HEM 601 B 1 
HETATM 40 N NB HEM . . . D 2 -1.737 -13.269 -70.258 1 94.03 ? NB HEM 601 B 1 
HETATM 41 N NC HEM . . . D 2 -2.955 -14.915 -68.304 1 98.56 ? NC HEM 601 B 1 
HETATM 42 N ND HEM . . . D 2 -5.439 -14.728 -69.672 1 101.56 ? ND HEM 601 B 1 
HETATM 43 FE FE HEM . . . D 2 -3.653 -13.838 -69.879 1 89.35 ? FE HEM 601 B 1 
HETATM 44 H HHB HEM . . . D 2 -1.586 -11.748 -73.172 1 144.49 ? HHB HEM 601 B 1 
HETATM 45 H HHC HEM . . . D 2 0.197 -14.046 -67.705 1 129.26 ? HHC HEM 601 B 1 
HETATM 46 H HHD HEM . . . D 2 -5.377 -16.744 -67.074 1 147.87 ? HHD HEM 601 B 1 
HETATM 47 H HMA HEM . . . D 2 -2.774 -10.795 -74.653 1 144.24 ? HMA HEM 601 B 1 
HETATM 48 H HMAA HEM . . . D 2 -4.21 -10.091 -74.701 1 144.24 ? HMAA HEM 601 B 1 
HETATM 49 H HMAB HEM . . . D 2 -3.927 -11.392 -75.588 1 144.24 ? HMAB HEM 601 B 1 
HETATM 50 H HAA HEM . . . D 2 -7.25 -12.691 -74.304 1 151.2 ? HAA HEM 601 B 1 
HETATM 51 H HAAA HEM . . . D 2 -6.394 -11.61 -75.083 1 151.2 ? HAAA HEM 601 B 1 
HETATM 52 H HBA HEM . . . D 2 -7.198 -9.941 -73.866 1 161.35 ? HBA HEM 601 B 1 
HETATM 53 H HBAA HEM . . . D 2 -7.206 -10.808 -72.541 1 161.35 ? HBAA HEM 601 B 1 
HETATM 54 H HMB HEM . . . D 2 1.532 -10.866 -71.804 1 128.59 ? HMB HEM 601 B 1 
HETATM 55 H HMBA HEM . . . D 2 0.325 -10.984 -72.822 1 128.59 ? HMBA HEM 601 B 1 
HETATM 56 H HMBB HEM . . . D 2 1.445 -12.103 -72.79 1 128.59 ? HMBB HEM 601 B 1 
HETATM 57 H HAB HEM . . . D 2 2.022 -13.254 -68.526 1 126.73 ? HAB HEM 601 B 1 
HETATM 58 H HBB HEM . . . D 2 3.806 -12.141 -69.482 1 121.5 ? HBB HEM 601 B 1 
HETATM 59 H HBBA HEM . . . D 2 2.822 -11.664 -70.757 1 121.5 ? HBBA HEM 601 B 1 
HETATM 60 H HMC HEM . . . D 2 -0.737 -15.416 -64.605 1 150.66 ? HMC HEM 601 B 1 
HETATM 61 H HMCA HEM . . . D 2 0.117 -14.728 -65.747 1 150.66 ? HMCA HEM 601 B 1 
HETATM 62 H HMCB HEM . . . D 2 0.026 -16.307 -65.669 1 150.66 ? HMCB HEM 601 B 1 
HETATM 63 H HAC HEM . . . D 2 -4.348 -17.116 -65.08 1 157.57 ? HAC HEM 601 B 1 
HETATM 64 H HBC HEM . . . D 2 -2.957 -17.756 -63.368 1 154.12 ? HBC HEM 601 B 1 
HETATM 65 H HBCA HEM . . . D 2 -1.682 -16.951 -64.108 1 154.12 ? HBCA HEM 601 B 1 
HETATM 66 H HMD HEM . . . D 2 -8.977 -16.385 -67.844 1 135.48 ? HMD HEM 601 B 1 
HETATM 67 H HMDA HEM . . . D 2 -7.671 -16.899 -67.076 1 135.48 ? HMDA HEM 601 B 1 
HETATM 68 H HMDB HEM . . . D 2 -8.18 -17.661 -68.387 1 135.48 ? HMDB HEM 601 B 1 
HETATM 69 H HAD HEM . . . D 2 -9.329 -14.37 -70.812 1 136.99 ? HAD HEM 601 B 1 
HETATM 70 H HADA HEM . . . D 2 -9.697 -15.524 -69.791 1 136.99 ? HADA HEM 601 B 1 
HETATM 71 H HBD HEM . . . D 2 -9.189 -17.148 -71.255 1 137.88 ? HBD HEM 601 B 1 
HETATM 72 H HBDA HEM . . . D 2 -8.189 -16.222 -72.062 1 137.88 ? HBDA HEM 601 B 1 
HETATM 73 H HHA HEM . . . D 2 -7.423 -13.541 -72.006 1 155.28 ? HHA HEM 601 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           73 
#