data_9HJ3 # _model_server_result.job_id R20dJ1gQ-wkXnEsAG53xJg _model_server_result.datetime_utc '2025-09-03 21:59:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 9HJ3 # _exptl.entry_id 9HJ3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 568.911 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-hydroxypropane-1,2-diyl dihexadecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9HJ3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G N CYS 1 G CYS 18 1_555 H C21 TDA . G TDA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale2 G SG CYS 1 G CYS 18 1_555 I C35 Z41 . G Z41 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.861 ? # _chem_comp.formula 'C35 H68 O5' _chem_comp.formula_weight 568.911 _chem_comp.id Z41 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-hydroxypropane-1,2-diyl dihexadecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 Z41 sing 414 n n C1 H11 Z41 sing 415 n n C1 H12 Z41 sing 416 n n C1 H13 Z41 sing 417 n n C2 C3 Z41 sing 418 n n C2 H21 Z41 sing 419 n n C2 H22 Z41 sing 420 n n C3 C4 Z41 sing 421 n n C3 H31 Z41 sing 422 n n C3 H32 Z41 sing 423 n n C4 C5 Z41 sing 424 n n C4 H41 Z41 sing 425 n n C4 H42 Z41 sing 426 n n C5 C6 Z41 sing 427 n n C5 H51 Z41 sing 428 n n C5 H52 Z41 sing 429 n n C6 C7 Z41 sing 430 n n C6 H61 Z41 sing 431 n n C6 H62 Z41 sing 432 n n C7 C8 Z41 sing 433 n n C7 H71 Z41 sing 434 n n C7 H72 Z41 sing 435 n n C8 C9 Z41 sing 436 n n C8 H81 Z41 sing 437 n n C8 H82 Z41 sing 438 n n C9 C10 Z41 sing 439 n n C9 H91 Z41 sing 440 n n C9 H92 Z41 sing 441 n n C10 C11 Z41 sing 442 n n C10 H101 Z41 sing 443 n n C10 H102 Z41 sing 444 n n C11 C12 Z41 sing 445 n n C11 H111 Z41 sing 446 n n C11 H112 Z41 sing 447 n n C12 C13 Z41 sing 448 n n C12 H121 Z41 sing 449 n n C12 H122 Z41 sing 450 n n C13 C14 Z41 sing 451 n n C13 H131 Z41 sing 452 n n C13 H132 Z41 sing 453 n n C14 C15 Z41 sing 454 n n C14 H141 Z41 sing 455 n n C14 H142 Z41 sing 456 n n C15 C16 Z41 sing 457 n n C15 H151 Z41 sing 458 n n C15 H152 Z41 sing 459 n n C16 O1 Z41 doub 460 n n C16 O2 Z41 sing 461 n n O2 C17 Z41 sing 462 n n C17 C18 Z41 sing 463 n n C17 H171 Z41 sing 464 n n C17 H172 Z41 sing 465 n n C18 O3 Z41 sing 466 n n C18 C35 Z41 sing 467 n n C18 H181 Z41 sing 468 n n O3 C19 Z41 sing 469 n n C19 O4 Z41 doub 470 n n C19 C20 Z41 sing 471 n n C20 C21 Z41 sing 472 n n C20 H201 Z41 sing 473 n n C20 H202 Z41 sing 474 n n C21 C22 Z41 sing 475 n n C21 H211 Z41 sing 476 n n C21 H212 Z41 sing 477 n n C22 C23 Z41 sing 478 n n C22 H221 Z41 sing 479 n n C22 H222 Z41 sing 480 n n C23 C24 Z41 sing 481 n n C23 H231 Z41 sing 482 n n C23 H232 Z41 sing 483 n n C24 C25 Z41 sing 484 n n C24 H241 Z41 sing 485 n n C24 H242 Z41 sing 486 n n C25 C26 Z41 sing 487 n n C25 H251 Z41 sing 488 n n C25 H252 Z41 sing 489 n n C26 C27 Z41 sing 490 n n C26 H261 Z41 sing 491 n n C26 H262 Z41 sing 492 n n C27 C28 Z41 sing 493 n n C27 H271 Z41 sing 494 n n C27 H272 Z41 sing 495 n n C28 C29 Z41 sing 496 n n C28 H281 Z41 sing 497 n n C28 H282 Z41 sing 498 n n C29 C30 Z41 sing 499 n n C29 H291 Z41 sing 500 n n C29 H292 Z41 sing 501 n n C30 C31 Z41 sing 502 n n C30 H301 Z41 sing 503 n n C30 H302 Z41 sing 504 n n C31 C32 Z41 sing 505 n n C31 H311 Z41 sing 506 n n C31 H312 Z41 sing 507 n n C32 C33 Z41 sing 508 n n C32 H321 Z41 sing 509 n n C32 H322 Z41 sing 510 n n C33 C34 Z41 sing 511 n n C33 H331 Z41 sing 512 n n C33 H332 Z41 sing 513 n n C34 H341 Z41 sing 514 n n C34 H342 Z41 sing 515 n n C34 H343 Z41 sing 516 n n C35 O5 Z41 sing 517 n n C35 H351 Z41 sing 518 n n C35 H352 Z41 sing 519 n n H5O O5 Z41 sing 520 n n # _atom_sites.entry_id 9HJ3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 TDA G 1 601 18 TDA TPC . I 9 Z41 G 1 602 18 Z41 TPC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 Z41 . . . I 9 141.925 174.783 182.657 1 58.23 ? C8 Z41 602 G 1 HETATM 2 C C9 Z41 . . . I 9 142.371 175.027 181.204 1 58.23 ? C9 Z41 602 G 1 HETATM 3 C C10 Z41 . . . I 9 143.734 174.369 180.906 1 58.23 ? C10 Z41 602 G 1 HETATM 4 C C11 Z41 . . . I 9 143.829 173.925 179.438 1 58.23 ? C11 Z41 602 G 1 HETATM 5 C C12 Z41 . . . I 9 145.228 174.174 178.865 1 58.23 ? C12 Z41 602 G 1 HETATM 6 C C13 Z41 . . . I 9 145.303 173.792 177.384 1 58.23 ? C13 Z41 602 G 1 HETATM 7 C C14 Z41 . . . I 9 146.642 173.106 177.075 1 58.23 ? C14 Z41 602 G 1 HETATM 8 C C15 Z41 . . . I 9 147.451 173.843 176 1 58.23 ? C15 Z41 602 G 1 HETATM 9 C C16 Z41 . . . I 9 148.375 172.821 175.329 1 58.23 ? C16 Z41 602 G 1 HETATM 10 O O1 Z41 . . . I 9 147.968 171.736 175.118 1 58.23 ? O1 Z41 602 G 1 HETATM 11 O O2 Z41 . . . I 9 149.697 173.144 174.998 1 58.23 ? O2 Z41 602 G 1 HETATM 12 C C17 Z41 . . . I 9 150.6 172.363 175.741 1 58.23 ? C17 Z41 602 G 1 HETATM 13 C C18 Z41 . . . I 9 151.872 172.157 174.919 1 58.23 ? C18 Z41 602 G 1 HETATM 14 O O3 Z41 . . . I 9 152.613 171.131 175.508 1 58.23 ? O3 Z41 602 G 1 HETATM 15 C C19 Z41 . . . I 9 153.45 171.509 176.564 1 58.23 ? C19 Z41 602 G 1 HETATM 16 O O4 Z41 . . . I 9 153.019 171.666 177.663 1 58.23 ? O4 Z41 602 G 1 HETATM 17 C C20 Z41 . . . I 9 154.929 171.715 176.309 1 58.23 ? C20 Z41 602 G 1 HETATM 18 C C21 Z41 . . . I 9 155.754 171.54 177.566 1 58.23 ? C21 Z41 602 G 1 HETATM 19 C C22 Z41 . . . I 9 156.239 172.825 178.202 1 58.23 ? C22 Z41 602 G 1 HETATM 20 C C23 Z41 . . . I 9 157.556 172.572 178.912 1 58.23 ? C23 Z41 602 G 1 HETATM 21 C C24 Z41 . . . I 9 158.322 173.869 179.114 1 58.23 ? C24 Z41 602 G 1 HETATM 22 C C25 Z41 . . . I 9 159.268 173.794 180.307 1 58.23 ? C25 Z41 602 G 1 HETATM 23 C C26 Z41 . . . I 9 159.214 172.429 181 1 58.23 ? C26 Z41 602 G 1 HETATM 24 C C27 Z41 . . . I 9 160.183 172.337 182.175 1 58.23 ? C27 Z41 602 G 1 HETATM 25 C C28 Z41 . . . I 9 160.584 173.726 182.688 1 58.23 ? C28 Z41 602 G 1 HETATM 26 C C29 Z41 . . . I 9 161.829 173.635 183.56 1 58.23 ? C29 Z41 602 G 1 HETATM 27 C C30 Z41 . . . I 9 161.531 172.941 184.888 1 58.23 ? C30 Z41 602 G 1 HETATM 28 C C31 Z41 . . . I 9 162.58 173.35 185.927 1 58.23 ? C31 Z41 602 G 1 HETATM 29 C C32 Z41 . . . I 9 162.054 173.252 187.359 1 58.23 ? C32 Z41 602 G 1 HETATM 30 C C33 Z41 . . . I 9 163.188 173.364 188.387 1 58.23 ? C33 Z41 602 G 1 HETATM 31 C C34 Z41 . . . I 9 162.919 172.543 189.649 1 58.23 ? C34 Z41 602 G 1 HETATM 32 C C35 Z41 . . . I 9 151.471 171.767 173.477 1 58.23 ? C35 Z41 602 G 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #