data_9HMX # _model_server_result.job_id Fi5L4TY7_BfjHTjezipCig _model_server_result.datetime_utc '2025-08-02 05:15:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 9HMX # _exptl.entry_id 9HMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.36 _cell.angle_gamma 90 _cell.entry_id 9HMX _cell.length_a 79.844 _cell.length_b 225.049 _cell.length_c 70.295 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 116 n n O1 HO1 HEZ sing 117 n n C1 C2 HEZ sing 118 n n C1 H11 HEZ sing 119 n n C1 H12 HEZ sing 120 n n C2 C3 HEZ sing 121 n n C2 H21 HEZ sing 122 n n C2 H22 HEZ sing 123 n n C3 C4 HEZ sing 124 n n C3 H31 HEZ sing 125 n n C3 H32 HEZ sing 126 n n C4 C5 HEZ sing 127 n n C4 H41 HEZ sing 128 n n C4 H42 HEZ sing 129 n n C5 C6 HEZ sing 130 n n C5 H51 HEZ sing 131 n n C5 H52 HEZ sing 132 n n C6 O6 HEZ sing 133 n n C6 H61 HEZ sing 134 n n C6 H62 HEZ sing 135 n n O6 HO6 HEZ sing 136 n n # _atom_sites.entry_id 9HMX _atom_sites.fract_transf_matrix[1][1] 0.012524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEZ A 1 301 1 HEZ HEZ . D 3 HEZ A 1 302 2 HEZ HEZ . E 4 HOH A 1 401 5 HOH HOH . E 4 HOH A 2 402 184 HOH HOH . E 4 HOH A 3 403 160 HOH HOH . E 4 HOH A 4 404 147 HOH HOH . E 4 HOH A 5 405 90 HOH HOH . E 4 HOH A 6 406 250 HOH HOH . E 4 HOH A 7 407 231 HOH HOH . E 4 HOH A 8 408 14 HOH HOH . E 4 HOH A 9 409 17 HOH HOH . E 4 HOH A 10 410 153 HOH HOH . E 4 HOH A 11 411 65 HOH HOH . E 4 HOH A 12 412 207 HOH HOH . E 4 HOH A 13 413 214 HOH HOH . E 4 HOH A 14 414 229 HOH HOH . E 4 HOH A 15 415 185 HOH HOH . E 4 HOH A 16 416 130 HOH HOH . E 4 HOH A 17 417 280 HOH HOH . E 4 HOH A 18 418 142 HOH HOH . E 4 HOH A 19 419 39 HOH HOH . E 4 HOH A 20 420 217 HOH HOH . E 4 HOH A 21 421 285 HOH HOH . E 4 HOH A 22 422 270 HOH HOH . E 4 HOH A 23 423 37 HOH HOH . E 4 HOH A 24 424 254 HOH HOH . E 4 HOH A 25 425 204 HOH HOH . E 4 HOH A 26 426 3 HOH HOH . E 4 HOH A 27 427 16 HOH HOH . E 4 HOH A 28 428 179 HOH HOH . E 4 HOH A 29 429 203 HOH HOH . E 4 HOH A 30 430 71 HOH HOH . E 4 HOH A 31 431 274 HOH HOH . E 4 HOH A 32 432 69 HOH HOH . E 4 HOH A 33 433 177 HOH HOH . E 4 HOH A 34 434 135 HOH HOH . E 4 HOH A 35 435 118 HOH HOH . E 4 HOH A 36 436 218 HOH HOH . E 4 HOH A 37 437 245 HOH HOH . E 4 HOH A 38 438 21 HOH HOH . E 4 HOH A 39 439 205 HOH HOH . E 4 HOH A 40 440 133 HOH HOH . E 4 HOH A 41 441 282 HOH HOH . E 4 HOH A 42 442 137 HOH HOH . E 4 HOH A 43 443 281 HOH HOH . E 4 HOH A 44 444 256 HOH HOH . E 4 HOH A 45 445 140 HOH HOH . E 4 HOH A 46 446 216 HOH HOH . E 4 HOH A 47 447 182 HOH HOH . E 4 HOH A 48 448 242 HOH HOH . E 4 HOH A 49 449 35 HOH HOH . E 4 HOH A 50 450 117 HOH HOH . E 4 HOH A 51 451 138 HOH HOH . E 4 HOH A 52 452 174 HOH HOH . E 4 HOH A 53 453 82 HOH HOH . E 4 HOH A 54 454 104 HOH HOH . E 4 HOH A 55 455 223 HOH HOH . E 4 HOH A 56 456 58 HOH HOH . E 4 HOH A 57 457 19 HOH HOH . E 4 HOH A 58 458 97 HOH HOH . E 4 HOH A 59 459 44 HOH HOH . E 4 HOH A 60 460 106 HOH HOH . E 4 HOH A 61 461 255 HOH HOH . E 4 HOH A 62 462 70 HOH HOH . E 4 HOH A 63 463 261 HOH HOH . E 4 HOH A 64 464 209 HOH HOH . E 4 HOH A 65 465 273 HOH HOH . E 4 HOH A 66 466 145 HOH HOH . E 4 HOH A 67 467 95 HOH HOH . E 4 HOH A 68 468 59 HOH HOH . E 4 HOH A 69 469 132 HOH HOH . E 4 HOH A 70 470 164 HOH HOH . E 4 HOH A 71 471 215 HOH HOH . E 4 HOH A 72 472 230 HOH HOH . E 4 HOH A 73 473 112 HOH HOH . E 4 HOH A 74 474 31 HOH HOH . E 4 HOH A 75 475 120 HOH HOH . E 4 HOH A 76 476 244 HOH HOH . E 4 HOH A 77 477 227 HOH HOH . E 4 HOH A 78 478 180 HOH HOH . E 4 HOH A 79 479 200 HOH HOH . E 4 HOH A 80 480 110 HOH HOH . E 4 HOH A 81 481 212 HOH HOH . E 4 HOH A 82 482 169 HOH HOH . E 4 HOH A 83 483 265 HOH HOH . E 4 HOH A 84 484 101 HOH HOH . E 4 HOH A 85 485 219 HOH HOH . E 4 HOH A 86 486 144 HOH HOH . E 4 HOH A 87 487 89 HOH HOH . E 4 HOH A 88 488 139 HOH HOH . E 4 HOH A 89 489 162 HOH HOH . E 4 HOH A 90 490 181 HOH HOH . E 4 HOH A 91 491 211 HOH HOH . E 4 HOH A 92 492 178 HOH HOH . E 4 HOH A 93 493 81 HOH HOH . E 4 HOH A 94 494 122 HOH HOH . E 4 HOH A 95 495 66 HOH HOH . E 4 HOH A 96 496 208 HOH HOH . E 4 HOH A 97 497 60 HOH HOH . E 4 HOH A 98 498 271 HOH HOH . E 4 HOH A 99 499 155 HOH HOH . F 4 HOH B 1 401 224 HOH HOH . F 4 HOH B 2 402 258 HOH HOH . F 4 HOH B 3 403 156 HOH HOH . F 4 HOH B 4 404 183 HOH HOH . F 4 HOH B 5 405 195 HOH HOH . F 4 HOH B 6 406 191 HOH HOH . F 4 HOH B 7 407 7 HOH HOH . F 4 HOH B 8 408 20 HOH HOH . F 4 HOH B 9 409 88 HOH HOH . F 4 HOH B 10 410 124 HOH HOH . F 4 HOH B 11 411 247 HOH HOH . F 4 HOH B 12 412 29 HOH HOH . F 4 HOH B 13 413 4 HOH HOH . F 4 HOH B 14 414 86 HOH HOH . F 4 HOH B 15 415 24 HOH HOH . F 4 HOH B 16 416 77 HOH HOH . F 4 HOH B 17 417 28 HOH HOH . F 4 HOH B 18 418 151 HOH HOH . F 4 HOH B 19 419 234 HOH HOH . F 4 HOH B 20 420 168 HOH HOH . F 4 HOH B 21 421 1 HOH HOH . F 4 HOH B 22 422 56 HOH HOH . F 4 HOH B 23 423 287 HOH HOH . F 4 HOH B 24 424 149 HOH HOH . F 4 HOH B 25 425 2 HOH HOH . F 4 HOH B 26 426 246 HOH HOH . F 4 HOH B 27 427 52 HOH HOH . F 4 HOH B 28 428 38 HOH HOH . F 4 HOH B 29 429 188 HOH HOH . F 4 HOH B 30 430 123 HOH HOH . F 4 HOH B 31 431 91 HOH HOH . F 4 HOH B 32 432 272 HOH HOH . F 4 HOH B 33 433 33 HOH HOH . F 4 HOH B 34 434 10 HOH HOH . F 4 HOH B 35 435 15 HOH HOH . F 4 HOH B 36 436 262 HOH HOH . F 4 HOH B 37 437 43 HOH HOH . F 4 HOH B 38 438 32 HOH HOH . F 4 HOH B 39 439 277 HOH HOH . F 4 HOH B 40 440 251 HOH HOH . F 4 HOH B 41 441 26 HOH HOH . F 4 HOH B 42 442 55 HOH HOH . F 4 HOH B 43 443 25 HOH HOH . F 4 HOH B 44 444 11 HOH HOH . F 4 HOH B 45 445 283 HOH HOH . F 4 HOH B 46 446 170 HOH HOH . F 4 HOH B 47 447 166 HOH HOH . F 4 HOH B 48 448 172 HOH HOH . F 4 HOH B 49 449 9 HOH HOH . F 4 HOH B 50 450 154 HOH HOH . F 4 HOH B 51 451 85 HOH HOH . F 4 HOH B 52 452 46 HOH HOH . F 4 HOH B 53 453 49 HOH HOH . F 4 HOH B 54 454 131 HOH HOH . F 4 HOH B 55 455 152 HOH HOH . F 4 HOH B 56 456 236 HOH HOH . F 4 HOH B 57 457 167 HOH HOH . F 4 HOH B 58 458 98 HOH HOH . F 4 HOH B 59 459 173 HOH HOH . F 4 HOH B 60 460 266 HOH HOH . F 4 HOH B 61 461 257 HOH HOH . F 4 HOH B 62 462 243 HOH HOH . F 4 HOH B 63 463 226 HOH HOH . F 4 HOH B 64 464 18 HOH HOH . F 4 HOH B 65 465 83 HOH HOH . F 4 HOH B 66 466 165 HOH HOH . F 4 HOH B 67 467 175 HOH HOH . F 4 HOH B 68 468 186 HOH HOH . F 4 HOH B 69 469 290 HOH HOH . F 4 HOH B 70 470 150 HOH HOH . F 4 HOH B 71 471 23 HOH HOH . F 4 HOH B 72 472 48 HOH HOH . F 4 HOH B 73 473 100 HOH HOH . F 4 HOH B 74 474 289 HOH HOH . F 4 HOH B 75 475 198 HOH HOH . F 4 HOH B 76 476 146 HOH HOH . F 4 HOH B 77 477 192 HOH HOH . F 4 HOH B 78 478 64 HOH HOH . F 4 HOH B 79 479 222 HOH HOH . F 4 HOH B 80 480 128 HOH HOH . F 4 HOH B 81 481 237 HOH HOH . F 4 HOH B 82 482 279 HOH HOH . F 4 HOH B 83 483 53 HOH HOH . F 4 HOH B 84 484 238 HOH HOH . F 4 HOH B 85 485 27 HOH HOH . F 4 HOH B 86 486 41 HOH HOH . F 4 HOH B 87 487 264 HOH HOH . F 4 HOH B 88 488 30 HOH HOH . F 4 HOH B 89 489 111 HOH HOH . F 4 HOH B 90 490 187 HOH HOH . F 4 HOH B 91 491 42 HOH HOH . F 4 HOH B 92 492 12 HOH HOH . F 4 HOH B 93 493 163 HOH HOH . F 4 HOH B 94 494 239 HOH HOH . F 4 HOH B 95 495 158 HOH HOH . F 4 HOH B 96 496 252 HOH HOH . F 4 HOH B 97 497 63 HOH HOH . F 4 HOH B 98 498 45 HOH HOH . F 4 HOH B 99 499 72 HOH HOH . F 4 HOH B 100 500 190 HOH HOH . F 4 HOH B 101 501 113 HOH HOH . F 4 HOH B 102 502 68 HOH HOH . F 4 HOH B 103 503 75 HOH HOH . F 4 HOH B 104 504 76 HOH HOH . F 4 HOH B 105 505 6 HOH HOH . F 4 HOH B 106 506 62 HOH HOH . F 4 HOH B 107 507 57 HOH HOH . F 4 HOH B 108 508 202 HOH HOH . F 4 HOH B 109 509 126 HOH HOH . F 4 HOH B 110 510 260 HOH HOH . F 4 HOH B 111 511 93 HOH HOH . F 4 HOH B 112 512 119 HOH HOH . F 4 HOH B 113 513 275 HOH HOH . F 4 HOH B 114 514 232 HOH HOH . F 4 HOH B 115 515 102 HOH HOH . F 4 HOH B 116 516 148 HOH HOH . F 4 HOH B 117 517 13 HOH HOH . F 4 HOH B 118 518 129 HOH HOH . F 4 HOH B 119 519 125 HOH HOH . F 4 HOH B 120 520 51 HOH HOH . F 4 HOH B 121 521 78 HOH HOH . F 4 HOH B 122 522 34 HOH HOH . F 4 HOH B 123 523 193 HOH HOH . F 4 HOH B 124 524 74 HOH HOH . F 4 HOH B 125 525 276 HOH HOH . F 4 HOH B 126 526 141 HOH HOH . F 4 HOH B 127 527 40 HOH HOH . F 4 HOH B 128 528 206 HOH HOH . F 4 HOH B 129 529 8 HOH HOH . F 4 HOH B 130 530 47 HOH HOH . F 4 HOH B 131 531 248 HOH HOH . F 4 HOH B 132 532 73 HOH HOH . F 4 HOH B 133 533 116 HOH HOH . F 4 HOH B 134 534 161 HOH HOH . F 4 HOH B 135 535 278 HOH HOH . F 4 HOH B 136 536 143 HOH HOH . F 4 HOH B 137 537 157 HOH HOH . F 4 HOH B 138 538 235 HOH HOH . F 4 HOH B 139 539 103 HOH HOH . F 4 HOH B 140 540 96 HOH HOH . F 4 HOH B 141 541 61 HOH HOH . F 4 HOH B 142 542 249 HOH HOH . F 4 HOH B 143 543 54 HOH HOH . F 4 HOH B 144 544 240 HOH HOH . F 4 HOH B 145 545 136 HOH HOH . F 4 HOH B 146 546 22 HOH HOH . F 4 HOH B 147 547 107 HOH HOH . F 4 HOH B 148 548 109 HOH HOH . F 4 HOH B 149 549 259 HOH HOH . F 4 HOH B 150 550 108 HOH HOH . F 4 HOH B 151 551 159 HOH HOH . F 4 HOH B 152 552 228 HOH HOH . F 4 HOH B 153 553 286 HOH HOH . F 4 HOH B 154 554 121 HOH HOH . F 4 HOH B 155 555 67 HOH HOH . F 4 HOH B 156 556 84 HOH HOH . F 4 HOH B 157 557 197 HOH HOH . F 4 HOH B 158 558 114 HOH HOH . F 4 HOH B 159 559 99 HOH HOH . F 4 HOH B 160 560 79 HOH HOH . F 4 HOH B 161 561 80 HOH HOH . F 4 HOH B 162 562 92 HOH HOH . F 4 HOH B 163 563 87 HOH HOH . F 4 HOH B 164 564 241 HOH HOH . F 4 HOH B 165 565 201 HOH HOH . F 4 HOH B 166 566 50 HOH HOH . F 4 HOH B 167 567 233 HOH HOH . F 4 HOH B 168 568 196 HOH HOH . F 4 HOH B 169 569 105 HOH HOH . F 4 HOH B 170 570 263 HOH HOH . F 4 HOH B 171 571 115 HOH HOH . F 4 HOH B 172 572 221 HOH HOH . F 4 HOH B 173 573 171 HOH HOH . F 4 HOH B 174 574 199 HOH HOH . F 4 HOH B 175 575 253 HOH HOH . F 4 HOH B 176 576 127 HOH HOH . F 4 HOH B 177 577 189 HOH HOH . F 4 HOH B 178 578 225 HOH HOH . F 4 HOH B 179 579 213 HOH HOH . F 4 HOH B 180 580 176 HOH HOH . F 4 HOH B 181 581 284 HOH HOH . F 4 HOH B 182 582 267 HOH HOH . F 4 HOH B 183 583 134 HOH HOH . F 4 HOH B 184 584 288 HOH HOH . F 4 HOH B 185 585 268 HOH HOH . F 4 HOH B 186 586 194 HOH HOH . F 4 HOH B 187 587 36 HOH HOH . F 4 HOH B 188 588 269 HOH HOH . F 4 HOH B 189 589 94 HOH HOH . F 4 HOH B 190 590 291 HOH HOH . F 4 HOH B 191 591 210 HOH HOH . F 4 HOH B 192 592 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . C 3 11.406 72.102 50.451 1 37.63 ? O1 HEZ 301 A 1 HETATM 2 C C1 HEZ . . . C 3 12.818 72.147 50.249 1 37.62 ? C1 HEZ 301 A 1 HETATM 3 C C2 HEZ . . . C 3 13.582 72.479 51.516 1 37.54 ? C2 HEZ 301 A 1 HETATM 4 C C3 HEZ . . . C 3 15.029 72.951 51.514 1 37.45 ? C3 HEZ 301 A 1 HETATM 5 C C4 HEZ . . . C 3 16.065 71.86 51.27 1 37.53 ? C4 HEZ 301 A 1 HETATM 6 C C5 HEZ . . . C 3 17.514 72.336 51.394 1 37.46 ? C5 HEZ 301 A 1 HETATM 7 C C6 HEZ . . . C 3 18.594 71.278 51.382 1 37.51 ? C6 HEZ 301 A 1 HETATM 8 O O6 HEZ . . . C 3 19.907 71.795 51.556 1 37.73 ? O6 HEZ 301 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #