data_9HQ9 # _model_server_result.job_id qp8A1Y6pmES9CiI7j2K0ew _model_server_result.datetime_utc '2025-01-22 07:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9HQ9 # _exptl.entry_id 9HQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5~{R})-7-pyrazin-2-yl-2-oxa-7-azaspiro[4.4]nonane _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.17 _cell.angle_gamma 90 _cell.entry_id 9HQ9 _cell.length_a 37.994 _cell.length_b 44.09 _cell.length_c 55.983 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N3 O' _chem_comp.formula_weight 205.256 _chem_comp.id A1H97 _chem_comp.mon_nstd_flag . _chem_comp.name (5~{R})-7-pyrazin-2-yl-2-oxa-7-azaspiro[4.4]nonane _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C09 A1H97 sing 1 n n O01 C11 A1H97 sing 2 n n N02 C07 A1H97 sing 3 n n N02 C10 A1H97 sing 4 n n N02 C12 A1H97 sing 5 n n N03 C12 A1H97 doub 6 n y N03 C14 A1H97 sing 7 n y N04 C13 A1H97 doub 8 n y N04 C15 A1H97 sing 9 n y C05 C06 A1H97 sing 10 n n C05 C07 A1H97 sing 11 n n C05 C08 A1H97 sing 12 n n C05 C09 A1H97 sing 13 n n C06 C10 A1H97 sing 14 n n C08 C11 A1H97 sing 15 n n C12 C13 A1H97 sing 16 n y C14 C15 A1H97 doub 17 n y C10 H102 A1H97 sing 18 n n C10 H101 A1H97 sing 19 n n C13 H131 A1H97 sing 20 n n C15 H151 A1H97 sing 21 n n C06 H061 A1H97 sing 22 n n C06 H062 A1H97 sing 23 n n C07 H072 A1H97 sing 24 n n C07 H071 A1H97 sing 25 n n C08 H082 A1H97 sing 26 n n C08 H081 A1H97 sing 27 n n C09 H092 A1H97 sing 28 n n C09 H091 A1H97 sing 29 n n C11 H112 A1H97 sing 30 n n C11 H111 A1H97 sing 31 n n C14 H141 A1H97 sing 32 n n # _atom_sites.entry_id 9HQ9 _atom_sites.fract_transf_matrix[1][1] 0.02632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001919 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1H97 A 1 201 201 A1H97 LIG . C 3 HOH A 1 301 171 HOH HOH . C 3 HOH A 2 302 93 HOH HOH . C 3 HOH A 3 303 92 HOH HOH . C 3 HOH A 4 304 68 HOH HOH . C 3 HOH A 5 305 91 HOH HOH . C 3 HOH A 6 306 69 HOH HOH . C 3 HOH A 7 307 184 HOH HOH . C 3 HOH A 8 308 165 HOH HOH . C 3 HOH A 9 309 108 HOH HOH . C 3 HOH A 10 310 194 HOH HOH . C 3 HOH A 11 311 187 HOH HOH . C 3 HOH A 12 312 34 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 74 HOH HOH . C 3 HOH A 15 315 131 HOH HOH . C 3 HOH A 16 316 183 HOH HOH . C 3 HOH A 17 317 48 HOH HOH . C 3 HOH A 18 318 106 HOH HOH . C 3 HOH A 19 319 120 HOH HOH . C 3 HOH A 20 320 205 HOH HOH . C 3 HOH A 21 321 25 HOH HOH . C 3 HOH A 22 322 118 HOH HOH . C 3 HOH A 23 323 22 HOH HOH . C 3 HOH A 24 324 99 HOH HOH . C 3 HOH A 25 325 98 HOH HOH . C 3 HOH A 26 326 31 HOH HOH . C 3 HOH A 27 327 163 HOH HOH . C 3 HOH A 28 328 148 HOH HOH . C 3 HOH A 29 329 77 HOH HOH . C 3 HOH A 30 330 4 HOH HOH . C 3 HOH A 31 331 138 HOH HOH . C 3 HOH A 32 332 2 HOH HOH . C 3 HOH A 33 333 6 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 115 HOH HOH . C 3 HOH A 36 336 162 HOH HOH . C 3 HOH A 37 337 53 HOH HOH . C 3 HOH A 38 338 3 HOH HOH . C 3 HOH A 39 339 122 HOH HOH . C 3 HOH A 40 340 112 HOH HOH . C 3 HOH A 41 341 47 HOH HOH . C 3 HOH A 42 342 70 HOH HOH . C 3 HOH A 43 343 9 HOH HOH . C 3 HOH A 44 344 37 HOH HOH . C 3 HOH A 45 345 102 HOH HOH . C 3 HOH A 46 346 42 HOH HOH . C 3 HOH A 47 347 19 HOH HOH . C 3 HOH A 48 348 11 HOH HOH . C 3 HOH A 49 349 204 HOH HOH . C 3 HOH A 50 350 46 HOH HOH . C 3 HOH A 51 351 7 HOH HOH . C 3 HOH A 52 352 27 HOH HOH . C 3 HOH A 53 353 95 HOH HOH . C 3 HOH A 54 354 193 HOH HOH . C 3 HOH A 55 355 60 HOH HOH . C 3 HOH A 56 356 192 HOH HOH . C 3 HOH A 57 357 189 HOH HOH . C 3 HOH A 58 358 49 HOH HOH . C 3 HOH A 59 359 44 HOH HOH . C 3 HOH A 60 360 158 HOH HOH . C 3 HOH A 61 361 35 HOH HOH . C 3 HOH A 62 362 16 HOH HOH . C 3 HOH A 63 363 43 HOH HOH . C 3 HOH A 64 364 36 HOH HOH . C 3 HOH A 65 365 1 HOH HOH . C 3 HOH A 66 366 103 HOH HOH . C 3 HOH A 67 367 72 HOH HOH . C 3 HOH A 68 368 17 HOH HOH . C 3 HOH A 69 369 30 HOH HOH . C 3 HOH A 70 370 197 HOH HOH . C 3 HOH A 71 371 38 HOH HOH . C 3 HOH A 72 372 8 HOH HOH . C 3 HOH A 73 373 20 HOH HOH . C 3 HOH A 74 374 55 HOH HOH . C 3 HOH A 75 375 164 HOH HOH . C 3 HOH A 76 376 39 HOH HOH . C 3 HOH A 77 377 12 HOH HOH . C 3 HOH A 78 378 201 HOH HOH . C 3 HOH A 79 379 157 HOH HOH . C 3 HOH A 80 380 81 HOH HOH . C 3 HOH A 81 381 32 HOH HOH . C 3 HOH A 82 382 167 HOH HOH . C 3 HOH A 83 383 172 HOH HOH . C 3 HOH A 84 384 75 HOH HOH . C 3 HOH A 85 385 14 HOH HOH . C 3 HOH A 86 386 57 HOH HOH . C 3 HOH A 87 387 156 HOH HOH . C 3 HOH A 88 388 78 HOH HOH . C 3 HOH A 89 389 130 HOH HOH . C 3 HOH A 90 390 24 HOH HOH . C 3 HOH A 91 391 196 HOH HOH . C 3 HOH A 92 392 56 HOH HOH . C 3 HOH A 93 393 97 HOH HOH . C 3 HOH A 94 394 88 HOH HOH . C 3 HOH A 95 395 116 HOH HOH . C 3 HOH A 96 396 127 HOH HOH . C 3 HOH A 97 397 149 HOH HOH . C 3 HOH A 98 398 85 HOH HOH . C 3 HOH A 99 399 66 HOH HOH . C 3 HOH A 100 400 64 HOH HOH . C 3 HOH A 101 401 58 HOH HOH . C 3 HOH A 102 402 40 HOH HOH . C 3 HOH A 103 403 207 HOH HOH . C 3 HOH A 104 404 26 HOH HOH . C 3 HOH A 105 405 89 HOH HOH . C 3 HOH A 106 406 10 HOH HOH . C 3 HOH A 107 407 166 HOH HOH . C 3 HOH A 108 408 76 HOH HOH . C 3 HOH A 109 409 33 HOH HOH . C 3 HOH A 110 410 80 HOH HOH . C 3 HOH A 111 411 41 HOH HOH . C 3 HOH A 112 412 161 HOH HOH . C 3 HOH A 113 413 28 HOH HOH . C 3 HOH A 114 414 45 HOH HOH . C 3 HOH A 115 415 73 HOH HOH . C 3 HOH A 116 416 51 HOH HOH . C 3 HOH A 117 417 155 HOH HOH . C 3 HOH A 118 418 54 HOH HOH . C 3 HOH A 119 419 126 HOH HOH . C 3 HOH A 120 420 84 HOH HOH . C 3 HOH A 121 421 206 HOH HOH . C 3 HOH A 122 422 15 HOH HOH . C 3 HOH A 123 423 83 HOH HOH . C 3 HOH A 124 424 59 HOH HOH . C 3 HOH A 125 425 177 HOH HOH . C 3 HOH A 126 426 96 HOH HOH . C 3 HOH A 127 427 159 HOH HOH . C 3 HOH A 128 428 170 HOH HOH . C 3 HOH A 129 429 216 HOH HOH . C 3 HOH A 130 430 119 HOH HOH . C 3 HOH A 131 431 198 HOH HOH . C 3 HOH A 132 432 109 HOH HOH . C 3 HOH A 133 433 63 HOH HOH . C 3 HOH A 134 434 62 HOH HOH . C 3 HOH A 135 435 52 HOH HOH . C 3 HOH A 136 436 123 HOH HOH . C 3 HOH A 137 437 87 HOH HOH . C 3 HOH A 138 438 134 HOH HOH . C 3 HOH A 139 439 61 HOH HOH . C 3 HOH A 140 440 82 HOH HOH . C 3 HOH A 141 441 147 HOH HOH . C 3 HOH A 142 442 21 HOH HOH . C 3 HOH A 143 443 133 HOH HOH . C 3 HOH A 144 444 129 HOH HOH . C 3 HOH A 145 445 113 HOH HOH . C 3 HOH A 146 446 29 HOH HOH . C 3 HOH A 147 447 175 HOH HOH . C 3 HOH A 148 448 50 HOH HOH . C 3 HOH A 149 449 18 HOH HOH . C 3 HOH A 150 450 124 HOH HOH . C 3 HOH A 151 451 140 HOH HOH . C 3 HOH A 152 452 180 HOH HOH . C 3 HOH A 153 453 86 HOH HOH . C 3 HOH A 154 454 101 HOH HOH . C 3 HOH A 155 455 114 HOH HOH . C 3 HOH A 156 456 117 HOH HOH . C 3 HOH A 157 457 212 HOH HOH . C 3 HOH A 158 458 152 HOH HOH . C 3 HOH A 159 459 208 HOH HOH . C 3 HOH A 160 460 107 HOH HOH . C 3 HOH A 161 461 173 HOH HOH . C 3 HOH A 162 462 132 HOH HOH . C 3 HOH A 163 463 142 HOH HOH . C 3 HOH A 164 464 136 HOH HOH . C 3 HOH A 165 465 65 HOH HOH . C 3 HOH A 166 466 200 HOH HOH . C 3 HOH A 167 467 128 HOH HOH . C 3 HOH A 168 468 176 HOH HOH . C 3 HOH A 169 469 168 HOH HOH . C 3 HOH A 170 470 181 HOH HOH . C 3 HOH A 171 471 186 HOH HOH . C 3 HOH A 172 472 190 HOH HOH . C 3 HOH A 173 473 67 HOH HOH . C 3 HOH A 174 474 151 HOH HOH . C 3 HOH A 175 475 94 HOH HOH . C 3 HOH A 176 476 135 HOH HOH . C 3 HOH A 177 477 211 HOH HOH . C 3 HOH A 178 478 217 HOH HOH . C 3 HOH A 179 479 191 HOH HOH . C 3 HOH A 180 480 185 HOH HOH . C 3 HOH A 181 481 195 HOH HOH . C 3 HOH A 182 482 160 HOH HOH . C 3 HOH A 183 483 150 HOH HOH . C 3 HOH A 184 484 182 HOH HOH . C 3 HOH A 185 485 23 HOH HOH . C 3 HOH A 186 486 146 HOH HOH . C 3 HOH A 187 487 139 HOH HOH . C 3 HOH A 188 488 90 HOH HOH . C 3 HOH A 189 489 143 HOH HOH . C 3 HOH A 190 490 178 HOH HOH . C 3 HOH A 191 491 71 HOH HOH . C 3 HOH A 192 492 199 HOH HOH . C 3 HOH A 193 493 110 HOH HOH . C 3 HOH A 194 494 203 HOH HOH . C 3 HOH A 195 495 137 HOH HOH . C 3 HOH A 196 496 169 HOH HOH . C 3 HOH A 197 497 174 HOH HOH . C 3 HOH A 198 498 179 HOH HOH . C 3 HOH A 199 499 144 HOH HOH . C 3 HOH A 200 500 121 HOH HOH . C 3 HOH A 201 501 153 HOH HOH . C 3 HOH A 202 502 79 HOH HOH . C 3 HOH A 203 503 105 HOH HOH . C 3 HOH A 204 504 100 HOH HOH . C 3 HOH A 205 505 214 HOH HOH . C 3 HOH A 206 506 125 HOH HOH . C 3 HOH A 207 507 218 HOH HOH . C 3 HOH A 208 508 141 HOH HOH . C 3 HOH A 209 509 111 HOH HOH . C 3 HOH A 210 510 188 HOH HOH . C 3 HOH A 211 511 154 HOH HOH . C 3 HOH A 212 512 104 HOH HOH . C 3 HOH A 213 513 202 HOH HOH . C 3 HOH A 214 514 213 HOH HOH . C 3 HOH A 215 515 209 HOH HOH . C 3 HOH A 216 516 145 HOH HOH . C 3 HOH A 217 517 215 HOH HOH . C 3 HOH A 218 518 210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1H97 . . . B 2 -19.664 -7.446 7.562 0.71 28.69 ? C10 A1H97 201 A 1 HETATM 2 C C13 A1H97 . . . B 2 -17.113 -6.344 8.881 0.71 29.02 ? C13 A1H97 201 A 1 HETATM 3 C C15 A1H97 . . . B 2 -16.193 -4.887 10.469 0.71 35.01 ? C15 A1H97 201 A 1 HETATM 4 C C05 A1H97 . . . B 2 -21.699 -8.073 8.548 0.71 37.83 ? C05 A1H97 201 A 1 HETATM 5 C C06 A1H97 . . . B 2 -21.164 -7.584 7.252 0.71 29.1 ? C06 A1H97 201 A 1 HETATM 6 C C07 A1H97 . . . B 2 -20.888 -7.302 9.59 0.71 37.24 ? C07 A1H97 201 A 1 HETATM 7 C C08 A1H97 . . . B 2 -21.635 -9.582 8.589 0.71 37.18 ? C08 A1H97 201 A 1 HETATM 8 C C09 A1H97 . . . B 2 -23.179 -7.825 8.771 0.71 38.18 ? C09 A1H97 201 A 1 HETATM 9 C C11 A1H97 . . . B 2 -22.97 -10.027 8.011 0.71 37.42 ? C11 A1H97 201 A 1 HETATM 10 C C12 A1H97 . . . B 2 -18.378 -6.443 9.589 0.71 26.07 ? C12 A1H97 201 A 1 HETATM 11 C C14 A1H97 . . . B 2 -17.398 -4.963 11.185 0.71 34.25 ? C14 A1H97 201 A 1 HETATM 12 N N02 A1H97 . . . B 2 -19.47 -7.271 9.047 0.71 27.43 ? N02 A1H97 201 A 1 HETATM 13 N N03 A1H97 . . . B 2 -18.437 -5.718 10.744 0.71 37.15 ? N03 A1H97 201 A 1 HETATM 14 N N04 A1H97 . . . B 2 -16.077 -5.598 9.324 0.71 30.36 ? N04 A1H97 201 A 1 HETATM 15 O O01 A1H97 . . . B 2 -23.847 -8.912 8.197 0.71 45.24 ? O01 A1H97 201 A 1 HETATM 16 H H102 A1H97 . . . B 2 -19.212 -8.299 7.036 0.71 34.42 ? H102 A1H97 201 A 1 HETATM 17 H H101 A1H97 . . . B 2 -19.386 -6.546 6.957 0.71 34.42 ? H101 A1H97 201 A 1 HETATM 18 H H131 A1H97 . . . B 2 -16.919 -6.877 7.929 0.71 34.83 ? H131 A1H97 201 A 1 HETATM 19 H H151 A1H97 . . . B 2 -15.317 -4.287 10.813 0.71 42.01 ? H151 A1H97 201 A 1 HETATM 20 H H061 A1H97 . . . B 2 -21.631 -6.636 6.901 0.71 34.92 ? H061 A1H97 201 A 1 HETATM 21 H H062 A1H97 . . . B 2 -21.327 -8.334 6.46 0.71 34.92 ? H062 A1H97 201 A 1 HETATM 22 H H072 A1H97 . . . B 2 -21.355 -6.29 9.669 0.71 44.69 ? H072 A1H97 201 A 1 HETATM 23 H H071 A1H97 . . . B 2 -21.162 -7.827 10.516 0.71 44.69 ? H071 A1H97 201 A 1 HETATM 24 H H082 A1H97 . . . B 2 -21.505 -10.007 9.586 0.71 44.61 ? H082 A1H97 201 A 1 HETATM 25 H H081 A1H97 . . . B 2 -20.861 -9.975 7.904 0.71 44.61 ? H081 A1H97 201 A 1 HETATM 26 H H092 A1H97 . . . B 2 -23.413 -7.693 9.842 0.71 45.81 ? H092 A1H97 201 A 1 HETATM 27 H H091 A1H97 . . . B 2 -23.403 -6.852 8.309 0.71 45.81 ? H091 A1H97 201 A 1 HETATM 28 H H112 A1H97 . . . B 2 -22.808 -10.343 6.963 0.71 44.91 ? H112 A1H97 201 A 1 HETATM 29 H H111 A1H97 . . . B 2 -23.277 -10.954 8.532 0.71 44.91 ? H111 A1H97 201 A 1 HETATM 30 H H141 A1H97 . . . B 2 -17.525 -4.402 12.139 0.71 41.1 ? H141 A1H97 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #