data_9HQL # _model_server_result.job_id wuH59gzABonROnhMYxF9yA _model_server_result.datetime_utc '2024-12-26 21:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9HQL # _exptl.entry_id 9HQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.289 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.05 _cell.angle_gamma 90 _cell.entry_id 9HQL _cell.length_a 37.9 _cell.length_b 43.92 _cell.length_c 55.73 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H11 N3 O2 S' _chem_comp.formula_weight 249.289 _chem_comp.id VZM _chem_comp.mon_nstd_flag . _chem_comp.name "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O VZM sing 376 n n O C1 VZM sing 377 n n C1 C2 VZM doub 378 n y C1 N2 VZM sing 379 n y C2 C3 VZM sing 380 n y N2 C10 VZM doub 381 n y C3 C4 VZM doub 382 n y C10 C4 VZM sing 383 n y C4 N VZM sing 384 n n O1 C5 VZM doub 385 n n N C5 VZM sing 386 n n C5 N1 VZM sing 387 n n S C6 VZM sing 388 n y S C9 VZM sing 389 n y N1 C6 VZM sing 390 n n C6 C7 VZM doub 391 n y C9 C8 VZM doub 392 n y C7 C8 VZM sing 393 n y N1 H1 VZM sing 394 n n C7 H2 VZM sing 395 n n C8 H3 VZM sing 396 n n C10 H4 VZM sing 397 n n C9 H5 VZM sing 398 n n N H6 VZM sing 399 n n C3 H7 VZM sing 400 n n C2 H8 VZM sing 401 n n C H9 VZM sing 402 n n C H10 VZM sing 403 n n C H11 VZM sing 404 n n # _atom_sites.entry_id 9HQL _atom_sites.fract_transf_matrix[1][1] 0.026385 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001868 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VZM A 1 201 1 VZM LIG . C 3 HOH A 1 301 182 HOH HOH . C 3 HOH A 2 302 150 HOH HOH . C 3 HOH A 3 303 154 HOH HOH . C 3 HOH A 4 304 78 HOH HOH . C 3 HOH A 5 305 61 HOH HOH . C 3 HOH A 6 306 143 HOH HOH . C 3 HOH A 7 307 92 HOH HOH . C 3 HOH A 8 308 104 HOH HOH . C 3 HOH A 9 309 123 HOH HOH . C 3 HOH A 10 310 3 HOH HOH . C 3 HOH A 11 311 117 HOH HOH . C 3 HOH A 12 312 53 HOH HOH . C 3 HOH A 13 313 51 HOH HOH . C 3 HOH A 14 314 193 HOH HOH . C 3 HOH A 15 315 25 HOH HOH . C 3 HOH A 16 316 38 HOH HOH . C 3 HOH A 17 317 18 HOH HOH . C 3 HOH A 18 318 83 HOH HOH . C 3 HOH A 19 319 1 HOH HOH . C 3 HOH A 20 320 13 HOH HOH . C 3 HOH A 21 321 162 HOH HOH . C 3 HOH A 22 322 87 HOH HOH . C 3 HOH A 23 323 85 HOH HOH . C 3 HOH A 24 324 19 HOH HOH . C 3 HOH A 25 325 12 HOH HOH . C 3 HOH A 26 326 65 HOH HOH . C 3 HOH A 27 327 8 HOH HOH . C 3 HOH A 28 328 165 HOH HOH . C 3 HOH A 29 329 50 HOH HOH . C 3 HOH A 30 330 144 HOH HOH . C 3 HOH A 31 331 100 HOH HOH . C 3 HOH A 32 332 149 HOH HOH . C 3 HOH A 33 333 195 HOH HOH . C 3 HOH A 34 334 21 HOH HOH . C 3 HOH A 35 335 102 HOH HOH . C 3 HOH A 36 336 72 HOH HOH . C 3 HOH A 37 337 141 HOH HOH . C 3 HOH A 38 338 16 HOH HOH . C 3 HOH A 39 339 153 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 10 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 64 HOH HOH . C 3 HOH A 44 344 116 HOH HOH . C 3 HOH A 45 345 11 HOH HOH . C 3 HOH A 46 346 35 HOH HOH . C 3 HOH A 47 347 52 HOH HOH . C 3 HOH A 48 348 132 HOH HOH . C 3 HOH A 49 349 138 HOH HOH . C 3 HOH A 50 350 99 HOH HOH . C 3 HOH A 51 351 14 HOH HOH . C 3 HOH A 52 352 190 HOH HOH . C 3 HOH A 53 353 63 HOH HOH . C 3 HOH A 54 354 22 HOH HOH . C 3 HOH A 55 355 23 HOH HOH . C 3 HOH A 56 356 48 HOH HOH . C 3 HOH A 57 357 4 HOH HOH . C 3 HOH A 58 358 109 HOH HOH . C 3 HOH A 59 359 20 HOH HOH . C 3 HOH A 60 360 84 HOH HOH . C 3 HOH A 61 361 110 HOH HOH . C 3 HOH A 62 362 91 HOH HOH . C 3 HOH A 63 363 9 HOH HOH . C 3 HOH A 64 364 5 HOH HOH . C 3 HOH A 65 365 34 HOH HOH . C 3 HOH A 66 366 125 HOH HOH . C 3 HOH A 67 367 2 HOH HOH . C 3 HOH A 68 368 186 HOH HOH . C 3 HOH A 69 369 15 HOH HOH . C 3 HOH A 70 370 159 HOH HOH . C 3 HOH A 71 371 49 HOH HOH . C 3 HOH A 72 372 37 HOH HOH . C 3 HOH A 73 373 93 HOH HOH . C 3 HOH A 74 374 58 HOH HOH . C 3 HOH A 75 375 30 HOH HOH . C 3 HOH A 76 376 155 HOH HOH . C 3 HOH A 77 377 137 HOH HOH . C 3 HOH A 78 378 47 HOH HOH . C 3 HOH A 79 379 43 HOH HOH . C 3 HOH A 80 380 140 HOH HOH . C 3 HOH A 81 381 6 HOH HOH . C 3 HOH A 82 382 28 HOH HOH . C 3 HOH A 83 383 26 HOH HOH . C 3 HOH A 84 384 31 HOH HOH . C 3 HOH A 85 385 66 HOH HOH . C 3 HOH A 86 386 202 HOH HOH . C 3 HOH A 87 387 24 HOH HOH . C 3 HOH A 88 388 44 HOH HOH . C 3 HOH A 89 389 46 HOH HOH . C 3 HOH A 90 390 27 HOH HOH . C 3 HOH A 91 391 161 HOH HOH . C 3 HOH A 92 392 32 HOH HOH . C 3 HOH A 93 393 127 HOH HOH . C 3 HOH A 94 394 80 HOH HOH . C 3 HOH A 95 395 163 HOH HOH . C 3 HOH A 96 396 45 HOH HOH . C 3 HOH A 97 397 175 HOH HOH . C 3 HOH A 98 398 36 HOH HOH . C 3 HOH A 99 399 55 HOH HOH . C 3 HOH A 100 400 111 HOH HOH . C 3 HOH A 101 401 41 HOH HOH . C 3 HOH A 102 402 177 HOH HOH . C 3 HOH A 103 403 7 HOH HOH . C 3 HOH A 104 404 171 HOH HOH . C 3 HOH A 105 405 89 HOH HOH . C 3 HOH A 106 406 39 HOH HOH . C 3 HOH A 107 407 166 HOH HOH . C 3 HOH A 108 408 56 HOH HOH . C 3 HOH A 109 409 77 HOH HOH . C 3 HOH A 110 410 107 HOH HOH . C 3 HOH A 111 411 76 HOH HOH . C 3 HOH A 112 412 136 HOH HOH . C 3 HOH A 113 413 183 HOH HOH . C 3 HOH A 114 414 108 HOH HOH . C 3 HOH A 115 415 139 HOH HOH . C 3 HOH A 116 416 81 HOH HOH . C 3 HOH A 117 417 122 HOH HOH . C 3 HOH A 118 418 148 HOH HOH . C 3 HOH A 119 419 147 HOH HOH . C 3 HOH A 120 420 57 HOH HOH . C 3 HOH A 121 421 75 HOH HOH . C 3 HOH A 122 422 60 HOH HOH . C 3 HOH A 123 423 67 HOH HOH . C 3 HOH A 124 424 158 HOH HOH . C 3 HOH A 125 425 114 HOH HOH . C 3 HOH A 126 426 191 HOH HOH . C 3 HOH A 127 427 164 HOH HOH . C 3 HOH A 128 428 112 HOH HOH . C 3 HOH A 129 429 105 HOH HOH . C 3 HOH A 130 430 135 HOH HOH . C 3 HOH A 131 431 185 HOH HOH . C 3 HOH A 132 432 74 HOH HOH . C 3 HOH A 133 433 68 HOH HOH . C 3 HOH A 134 434 128 HOH HOH . C 3 HOH A 135 435 157 HOH HOH . C 3 HOH A 136 436 152 HOH HOH . C 3 HOH A 137 437 69 HOH HOH . C 3 HOH A 138 438 173 HOH HOH . C 3 HOH A 139 439 82 HOH HOH . C 3 HOH A 140 440 17 HOH HOH . C 3 HOH A 141 441 184 HOH HOH . C 3 HOH A 142 442 95 HOH HOH . C 3 HOH A 143 443 118 HOH HOH . C 3 HOH A 144 444 200 HOH HOH . C 3 HOH A 145 445 86 HOH HOH . C 3 HOH A 146 446 133 HOH HOH . C 3 HOH A 147 447 62 HOH HOH . C 3 HOH A 148 448 180 HOH HOH . C 3 HOH A 149 449 174 HOH HOH . C 3 HOH A 150 450 181 HOH HOH . C 3 HOH A 151 451 197 HOH HOH . C 3 HOH A 152 452 29 HOH HOH . C 3 HOH A 153 453 194 HOH HOH . C 3 HOH A 154 454 160 HOH HOH . C 3 HOH A 155 455 172 HOH HOH . C 3 HOH A 156 456 169 HOH HOH . C 3 HOH A 157 457 192 HOH HOH . C 3 HOH A 158 458 103 HOH HOH . C 3 HOH A 159 459 198 HOH HOH . C 3 HOH A 160 460 98 HOH HOH . C 3 HOH A 161 461 54 HOH HOH . C 3 HOH A 162 462 121 HOH HOH . C 3 HOH A 163 463 129 HOH HOH . C 3 HOH A 164 464 115 HOH HOH . C 3 HOH A 165 465 97 HOH HOH . C 3 HOH A 166 466 96 HOH HOH . C 3 HOH A 167 467 145 HOH HOH . C 3 HOH A 168 468 120 HOH HOH . C 3 HOH A 169 469 156 HOH HOH . C 3 HOH A 170 470 33 HOH HOH . C 3 HOH A 171 471 131 HOH HOH . C 3 HOH A 172 472 113 HOH HOH . C 3 HOH A 173 473 151 HOH HOH . C 3 HOH A 174 474 101 HOH HOH . C 3 HOH A 175 475 168 HOH HOH . C 3 HOH A 176 476 73 HOH HOH . C 3 HOH A 177 477 176 HOH HOH . C 3 HOH A 178 478 90 HOH HOH . C 3 HOH A 179 479 199 HOH HOH . C 3 HOH A 180 480 146 HOH HOH . C 3 HOH A 181 481 142 HOH HOH . C 3 HOH A 182 482 59 HOH HOH . C 3 HOH A 183 483 106 HOH HOH . C 3 HOH A 184 484 79 HOH HOH . C 3 HOH A 185 485 167 HOH HOH . C 3 HOH A 186 486 196 HOH HOH . C 3 HOH A 187 487 179 HOH HOH . C 3 HOH A 188 488 119 HOH HOH . C 3 HOH A 189 489 126 HOH HOH . C 3 HOH A 190 490 178 HOH HOH . C 3 HOH A 191 491 170 HOH HOH . C 3 HOH A 192 492 70 HOH HOH . C 3 HOH A 193 493 134 HOH HOH . C 3 HOH A 194 494 187 HOH HOH . C 3 HOH A 195 495 71 HOH HOH . C 3 HOH A 196 496 189 HOH HOH . C 3 HOH A 197 497 124 HOH HOH . C 3 HOH A 198 498 201 HOH HOH . C 3 HOH A 199 499 94 HOH HOH . C 3 HOH A 200 500 130 HOH HOH . C 3 HOH A 201 501 88 HOH HOH . C 3 HOH A 202 502 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VZM . . . B 2 -20.078 -4.907 8.66 0.65 36.76 ? N1 VZM 201 A 1 HETATM 2 C C4 VZM . . . B 2 -19.067 -7.512 8.107 0.65 33.86 ? C4 VZM 201 A 1 HETATM 3 C C5 VZM . . . B 2 -20.874 -6.002 8.886 0.65 35.12 ? C5 VZM 201 A 1 HETATM 4 C C6 VZM . . . B 2 -19.812 -3.87 9.523 0.65 34.5 ? C6 VZM 201 A 1 HETATM 5 C C7 VZM . . . B 2 -20.598 -2.783 9.775 0.65 26.3 ? C7 VZM 201 A 1 HETATM 6 C C8 VZM . . . B 2 -19.874 -1.817 10.524 0.65 24.21 ? C8 VZM 201 A 1 HETATM 7 C C10 VZM . . . B 2 -18.079 -6.939 8.903 0.65 37.61 ? C10 VZM 201 A 1 HETATM 8 O O1 VZM . . . B 2 -21.915 -5.93 9.521 0.65 32.27 ? O1 VZM 201 A 1 HETATM 9 S S VZM . . . B 2 -18.338 -3.834 10.441 0.65 40.68 ? S VZM 201 A 1 HETATM 10 C C9 VZM . . . B 2 -18.626 -2.215 10.857 0.65 25.45 ? C9 VZM 201 A 1 HETATM 11 N N VZM . . . B 2 -20.407 -7.121 8.254 0.65 34.6 ? N VZM 201 A 1 HETATM 12 C C3 VZM . . . B 2 -18.678 -8.505 7.219 0.65 31.5 ? C3 VZM 201 A 1 HETATM 13 C C2 VZM . . . B 2 -17.369 -8.857 7.125 0.65 33.26 ? C2 VZM 201 A 1 HETATM 14 N N2 VZM . . . B 2 -16.788 -7.274 8.82 0.65 35.39 ? N2 VZM 201 A 1 HETATM 15 C C1 VZM . . . B 2 -16.459 -8.203 7.948 0.65 36.95 ? C1 VZM 201 A 1 HETATM 16 O O VZM . . . B 2 -15.148 -8.543 7.879 0.65 33.12 ? O VZM 201 A 1 HETATM 17 C C VZM . . . B 2 -14.788 -9.717 7.137 0.65 36.85 ? C VZM 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #