data_9HRU # _model_server_result.job_id YrVdnMXXDjc5RjB_IMr4tw _model_server_result.datetime_utc '2025-08-21 20:08:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hru # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 9HRU # _exptl.entry_id 9HRU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description phosphated-cyclotrixylohydroquinoylene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HRU _cell.length_a 86.307 _cell.length_b 86.307 _cell.length_c 72.738 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HRU _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 B SG CYS 6 B CYS 6 1_555 B SG CYS 127 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 B SG CYS 30 B CYS 30 1_555 B SG CYS 115 B CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf7 B SG CYS 64 B CYS 64 1_555 B SG CYS 80 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf8 B SG CYS 76 B CYS 76 1_555 B SG CYS 94 B CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? # _chem_comp.formula 'C27 H27 O12 P3' _chem_comp.formula_weight 636.417 _chem_comp.id A1IXG _chem_comp.mon_nstd_flag . _chem_comp.name phosphated-cyclotrixylohydroquinoylene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O P A1IXG doub 1 n n P O1 A1IXG sing 2 n n O1 C A1IXG sing 3 n n C C1 A1IXG doub 4 n y C1 C2 A1IXG sing 5 n n C2 C3 A1IXG sing 6 n n C3 C4 A1IXG doub 7 n y C4 C5 A1IXG sing 8 n y O2 C5 A1IXG sing 9 n n P1 O2 A1IXG sing 10 n n O3 P1 A1IXG doub 11 n n O4 P1 A1IXG sing 12 n n C5 C6 A1IXG doub 13 n y C7 C6 A1IXG sing 14 n n C6 C8 A1IXG sing 15 n y C9 C8 A1IXG sing 16 n n C8 C10 A1IXG doub 17 n y C3 C10 A1IXG sing 18 n y C10 O5 A1IXG sing 19 n n O5 P A1IXG sing 20 n n C1 C11 A1IXG sing 21 n y C11 C12 A1IXG sing 22 n n C12 C13 A1IXG sing 23 n n C13 C14 A1IXG doub 24 n y O6 C14 A1IXG sing 25 n n P2 O6 A1IXG sing 26 n n O7 P2 A1IXG doub 27 n n O8 P2 A1IXG sing 28 n n C14 C15 A1IXG sing 29 n y C16 C15 A1IXG sing 30 n n C15 C17 A1IXG doub 31 n y C18 C17 A1IXG sing 32 n n C17 C19 A1IXG sing 33 n y C19 O9 A1IXG sing 34 n n O9 P1 A1IXG sing 35 n n C20 C19 A1IXG doub 36 n y C13 C20 A1IXG sing 37 n y C21 C20 A1IXG sing 38 n n C4 C21 A1IXG sing 39 n n C11 C22 A1IXG doub 40 n y C22 O10 A1IXG sing 41 n n O10 P2 A1IXG sing 42 n n C23 C22 A1IXG sing 43 n y C24 C23 A1IXG sing 44 n n C25 C23 A1IXG doub 45 n y C C25 A1IXG sing 46 n y C26 C25 A1IXG sing 47 n n P O11 A1IXG sing 48 n n C12 H9 A1IXG sing 49 n n C12 H8 A1IXG sing 50 n n C16 H11 A1IXG sing 51 n n C16 H12 A1IXG sing 52 n n C16 H10 A1IXG sing 53 n n C18 H14 A1IXG sing 54 n n C18 H15 A1IXG sing 55 n n C18 H13 A1IXG sing 56 n n C2 H1 A1IXG sing 57 n n C2 H A1IXG sing 58 n n C21 H17 A1IXG sing 59 n n C21 H16 A1IXG sing 60 n n C24 H20 A1IXG sing 61 n n C24 H19 A1IXG sing 62 n n C24 H18 A1IXG sing 63 n n C26 H23 A1IXG sing 64 n n C26 H22 A1IXG sing 65 n n C26 H21 A1IXG sing 66 n n C7 H4 A1IXG sing 67 n n C7 H2 A1IXG sing 68 n n C7 H3 A1IXG sing 69 n n C9 H7 A1IXG sing 70 n n C9 H5 A1IXG sing 71 n n C9 H6 A1IXG sing 72 n n O11 H24 A1IXG sing 73 n n O4 H25 A1IXG sing 74 n n O8 H26 A1IXG sing 75 n n # _atom_sites.entry_id 9HRU _atom_sites.fract_transf_matrix[1][1] 0.011587 _atom_sites.fract_transf_matrix[1][2] 0.006689 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013379 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1IXG A 1 201 201 A1IXG PCT . D 3 MES A 1 202 202 MES MES . E 4 SO4 A 1 203 3 SO4 SO4 . F 4 SO4 A 1 204 4 SO4 SO4 . G 4 SO4 A 1 205 6 SO4 SO4 . H 2 A1IXG B 1 201 201 A1IXG PCT . I 4 SO4 B 1 202 1 SO4 SO4 . J 4 SO4 B 1 203 2 SO4 SO4 . K 4 SO4 B 1 204 5 SO4 SO4 . L 5 HOH A 1 301 25 HOH HOH . L 5 HOH A 2 302 70 HOH HOH . L 5 HOH A 3 303 16 HOH HOH . L 5 HOH A 4 304 56 HOH HOH . L 5 HOH A 5 305 14 HOH HOH . L 5 HOH A 6 306 78 HOH HOH . L 5 HOH A 7 307 36 HOH HOH . L 5 HOH A 8 308 5 HOH HOH . L 5 HOH A 9 309 30 HOH HOH . L 5 HOH A 10 310 43 HOH HOH . L 5 HOH A 11 311 62 HOH HOH . L 5 HOH A 12 312 17 HOH HOH . L 5 HOH A 13 313 27 HOH HOH . L 5 HOH A 14 314 59 HOH HOH . L 5 HOH A 15 315 84 HOH HOH . L 5 HOH A 16 316 33 HOH HOH . L 5 HOH A 17 317 90 HOH HOH . L 5 HOH A 18 318 2 HOH HOH . L 5 HOH A 19 319 26 HOH HOH . L 5 HOH A 20 320 7 HOH HOH . L 5 HOH A 21 321 40 HOH HOH . L 5 HOH A 22 322 69 HOH HOH . L 5 HOH A 23 323 44 HOH HOH . L 5 HOH A 24 324 53 HOH HOH . L 5 HOH A 25 325 72 HOH HOH . L 5 HOH A 26 326 9 HOH HOH . L 5 HOH A 27 327 83 HOH HOH . L 5 HOH A 28 328 24 HOH HOH . L 5 HOH A 29 329 22 HOH HOH . L 5 HOH A 30 330 34 HOH HOH . L 5 HOH A 31 331 58 HOH HOH . L 5 HOH A 32 332 94 HOH HOH . L 5 HOH A 33 333 12 HOH HOH . L 5 HOH A 34 334 39 HOH HOH . L 5 HOH A 35 335 82 HOH HOH . L 5 HOH A 36 336 97 HOH HOH . L 5 HOH A 37 337 99 HOH HOH . L 5 HOH A 38 338 63 HOH HOH . L 5 HOH A 39 339 32 HOH HOH . L 5 HOH A 40 340 100 HOH HOH . L 5 HOH A 41 341 93 HOH HOH . L 5 HOH A 42 342 101 HOH HOH . L 5 HOH A 43 343 95 HOH HOH . L 5 HOH A 44 344 31 HOH HOH . L 5 HOH A 45 345 87 HOH HOH . L 5 HOH A 46 346 102 HOH HOH . L 5 HOH A 47 347 23 HOH HOH . L 5 HOH A 48 348 37 HOH HOH . L 5 HOH A 49 349 92 HOH HOH . L 5 HOH A 50 350 81 HOH HOH . L 5 HOH A 51 351 50 HOH HOH . M 5 HOH B 1 301 18 HOH HOH . M 5 HOH B 2 302 13 HOH HOH . M 5 HOH B 3 303 47 HOH HOH . M 5 HOH B 4 304 103 HOH HOH . M 5 HOH B 5 305 104 HOH HOH . M 5 HOH B 6 306 38 HOH HOH . M 5 HOH B 7 307 21 HOH HOH . M 5 HOH B 8 308 3 HOH HOH . M 5 HOH B 9 309 8 HOH HOH . M 5 HOH B 10 310 1 HOH HOH . M 5 HOH B 11 311 57 HOH HOH . M 5 HOH B 12 312 73 HOH HOH . M 5 HOH B 13 313 55 HOH HOH . M 5 HOH B 14 314 42 HOH HOH . M 5 HOH B 15 315 75 HOH HOH . M 5 HOH B 16 316 10 HOH HOH . M 5 HOH B 17 317 80 HOH HOH . M 5 HOH B 18 318 107 HOH HOH . M 5 HOH B 19 319 61 HOH HOH . M 5 HOH B 20 320 6 HOH HOH . M 5 HOH B 21 321 51 HOH HOH . M 5 HOH B 22 322 86 HOH HOH . M 5 HOH B 23 323 45 HOH HOH . M 5 HOH B 24 324 79 HOH HOH . M 5 HOH B 25 325 88 HOH HOH . M 5 HOH B 26 326 96 HOH HOH . M 5 HOH B 27 327 4 HOH HOH . M 5 HOH B 28 328 48 HOH HOH . M 5 HOH B 29 329 19 HOH HOH . M 5 HOH B 30 330 46 HOH HOH . M 5 HOH B 31 331 20 HOH HOH . M 5 HOH B 32 332 66 HOH HOH . M 5 HOH B 33 333 74 HOH HOH . M 5 HOH B 34 334 65 HOH HOH . M 5 HOH B 35 335 11 HOH HOH . M 5 HOH B 36 336 52 HOH HOH . M 5 HOH B 37 337 29 HOH HOH . M 5 HOH B 38 338 64 HOH HOH . M 5 HOH B 39 339 41 HOH HOH . M 5 HOH B 40 340 98 HOH HOH . M 5 HOH B 41 341 91 HOH HOH . M 5 HOH B 42 342 71 HOH HOH . M 5 HOH B 43 343 68 HOH HOH . M 5 HOH B 44 344 85 HOH HOH . M 5 HOH B 45 345 28 HOH HOH . M 5 HOH B 46 346 15 HOH HOH . M 5 HOH B 47 347 67 HOH HOH . M 5 HOH B 48 348 49 HOH HOH . M 5 HOH B 49 349 89 HOH HOH . M 5 HOH B 50 350 60 HOH HOH . M 5 HOH B 51 351 77 HOH HOH . M 5 HOH B 52 352 105 HOH HOH . M 5 HOH B 53 353 106 HOH HOH . M 5 HOH B 54 354 76 HOH HOH . M 5 HOH B 55 355 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P A1IXG . . . H 2 -41.814 25.791 4.381 0.7 55.88 ? P A1IXG 201 B 1 HETATM 2 C C1 A1IXG . . . H 2 -40.051 28.571 3.509 0.7 41.6 ? C1 A1IXG 201 B 1 HETATM 3 O O1 A1IXG . . . H 2 -40.297 26.324 4.382 0.7 48.8 ? O1 A1IXG 201 B 1 HETATM 4 C C A1IXG . . . H 2 -39.761 27.211 3.421 0.7 50.65 ? C A1IXG 201 B 1 HETATM 5 O O A1IXG . . . H 2 -42.383 26.041 3.039 0.7 49.31 ? O A1IXG 201 B 1 HETATM 6 C C10 A1IXG . . . H 2 -43.204 27.967 4.945 0.7 53.75 ? C10 A1IXG 201 B 1 HETATM 7 C C11 A1IXG . . . H 2 -39.394 29.468 2.641 0.7 52.39 ? C11 A1IXG 201 B 1 HETATM 8 C C12 A1IXG . . . H 2 -39.631 30.966 2.769 0.7 45.29 ? C12 A1IXG 201 B 1 HETATM 9 C C13 A1IXG . . . H 2 -40.635 31.642 1.848 0.7 49.74 ? C13 A1IXG 201 B 1 HETATM 10 C C14 A1IXG . . . H 2 -40.298 32.066 0.559 0.7 54.88 ? C14 A1IXG 201 B 1 HETATM 11 C C15 A1IXG . . . H 2 -41.203 32.703 -0.292 0.7 52.76 ? C15 A1IXG 201 B 1 HETATM 12 C C16 A1IXG . . . H 2 -40.793 33.144 -1.677 0.7 47.45 ? C16 A1IXG 201 B 1 HETATM 13 C C17 A1IXG . . . H 2 -42.51 32.93 0.164 0.7 54.05 ? C17 A1IXG 201 B 1 HETATM 14 C C18 A1IXG . . . H 2 -43.519 33.618 -0.723 0.7 45.3 ? C18 A1IXG 201 B 1 HETATM 15 C C19 A1IXG . . . H 2 -42.849 32.507 1.447 0.7 51 ? C19 A1IXG 201 B 1 HETATM 16 C C2 A1IXG . . . H 2 -40.934 29.093 4.63 0.7 46.51 ? C2 A1IXG 201 B 1 HETATM 17 C C20 A1IXG . . . H 2 -41.948 31.871 2.295 0.7 48.47 ? C20 A1IXG 201 B 1 HETATM 18 C C21 A1IXG . . . H 2 -42.329 31.446 3.704 0.7 50.81 ? C21 A1IXG 201 B 1 HETATM 19 C C22 A1IXG . . . H 2 -38.464 28.942 1.745 0.7 49.8 ? C22 A1IXG 201 B 1 HETATM 20 C C23 A1IXG . . . H 2 -38.17 27.579 1.662 0.7 45.48 ? C23 A1IXG 201 B 1 HETATM 21 C C24 A1IXG . . . H 2 -37.129 27.06 0.7 0.7 51.84 ? C24 A1IXG 201 B 1 HETATM 22 C C25 A1IXG . . . H 2 -38.846 26.693 2.509 0.7 46.34 ? C25 A1IXG 201 B 1 HETATM 23 C C26 A1IXG . . . H 2 -38.57 25.212 2.437 0.7 45.99 ? C26 A1IXG 201 B 1 HETATM 24 C C3 A1IXG . . . H 2 -42.451 29.071 4.544 0.7 54.33 ? C3 A1IXG 201 B 1 HETATM 25 C C4 A1IXG . . . H 2 -43.133 30.218 4.1 0.7 58.32 ? C4 A1IXG 201 B 1 HETATM 26 C C5 A1IXG . . . H 2 -44.525 30.198 4.085 0.7 52.04 ? C5 A1IXG 201 B 1 HETATM 27 C C6 A1IXG . . . H 2 -45.276 29.092 4.479 0.7 51.44 ? C6 A1IXG 201 B 1 HETATM 28 C C7 A1IXG . . . H 2 -46.784 29.111 4.424 0.7 54.09 ? C7 A1IXG 201 B 1 HETATM 29 C C8 A1IXG . . . H 2 -44.6 27.947 4.92 0.7 49.36 ? C8 A1IXG 201 B 1 HETATM 30 C C9 A1IXG . . . H 2 -45.376 26.725 5.347 0.7 49.21 ? C9 A1IXG 201 B 1 HETATM 31 O O10 A1IXG . . . H 2 -37.734 29.821 0.917 0.7 55.84 ? O10 A1IXG 201 B 1 HETATM 32 O O11 A1IXG . . . H 2 -41.846 24.426 4.959 0.7 50.53 ? O11 A1IXG 201 B 1 HETATM 33 O O2 A1IXG . . . H 2 -45.223 31.34 3.644 0.7 53.16 ? O2 A1IXG 201 B 1 HETATM 34 O O3 A1IXG . . . H 2 -44.948 30.492 1.322 0.7 61.68 ? O3 A1IXG 201 B 1 HETATM 35 O O4 A1IXG . . . H 2 -46.639 32.362 1.836 0.7 71.55 ? O4 A1IXG 201 B 1 HETATM 36 O O5 A1IXG . . . H 2 -42.541 26.806 5.395 0.7 54.27 ? O5 A1IXG 201 B 1 HETATM 37 O O6 A1IXG . . . H 2 -38.978 31.887 0.092 0.7 48.83 ? O6 A1IXG 201 B 1 HETATM 38 O O7 A1IXG . . . H 2 -37.208 30.842 -1.263 0.7 56.18 ? O7 A1IXG 201 B 1 HETATM 39 O O8 A1IXG . . . H 2 -39.466 29.655 -0.931 0.7 52.58 ? O8 A1IXG 201 B 1 HETATM 40 O O9 A1IXG . . . H 2 -44.158 32.782 1.902 0.7 57.13 ? O9 A1IXG 201 B 1 HETATM 41 P P1 A1IXG . . . H 2 -45.334 31.701 2.082 0.7 66.52 ? P1 A1IXG 201 B 1 HETATM 42 P P2 A1IXG . . . H 2 -38.36 30.49 -0.406 0.7 60.58 ? P2 A1IXG 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #