data_9HRZ # _model_server_result.job_id 6lhPFezD9ncaiDs8rDhEng _model_server_result.datetime_utc '2025-08-21 17:05:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 9HRZ # _exptl.entry_id 9HRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description phosphated-cyclotrixylohydroquinoylene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HRZ _cell.length_a 43.569 _cell.length_b 43.569 _cell.length_c 122.997 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C27 H27 O12 P3' _chem_comp.formula_weight 636.417 _chem_comp.id A1IXG _chem_comp.mon_nstd_flag . _chem_comp.name phosphated-cyclotrixylohydroquinoylene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O P A1IXG doub 1 n n P O1 A1IXG sing 2 n n O1 C A1IXG sing 3 n n C C1 A1IXG doub 4 n y C1 C2 A1IXG sing 5 n n C2 C3 A1IXG sing 6 n n C3 C4 A1IXG doub 7 n y C4 C5 A1IXG sing 8 n y O2 C5 A1IXG sing 9 n n P1 O2 A1IXG sing 10 n n O3 P1 A1IXG doub 11 n n O4 P1 A1IXG sing 12 n n C5 C6 A1IXG doub 13 n y C7 C6 A1IXG sing 14 n n C6 C8 A1IXG sing 15 n y C9 C8 A1IXG sing 16 n n C8 C10 A1IXG doub 17 n y C3 C10 A1IXG sing 18 n y C10 O5 A1IXG sing 19 n n O5 P A1IXG sing 20 n n C1 C11 A1IXG sing 21 n y C11 C12 A1IXG sing 22 n n C12 C13 A1IXG sing 23 n n C13 C14 A1IXG doub 24 n y O6 C14 A1IXG sing 25 n n P2 O6 A1IXG sing 26 n n O7 P2 A1IXG doub 27 n n O8 P2 A1IXG sing 28 n n C14 C15 A1IXG sing 29 n y C16 C15 A1IXG sing 30 n n C15 C17 A1IXG doub 31 n y C18 C17 A1IXG sing 32 n n C17 C19 A1IXG sing 33 n y C19 O9 A1IXG sing 34 n n O9 P1 A1IXG sing 35 n n C20 C19 A1IXG doub 36 n y C13 C20 A1IXG sing 37 n y C21 C20 A1IXG sing 38 n n C4 C21 A1IXG sing 39 n n C11 C22 A1IXG doub 40 n y C22 O10 A1IXG sing 41 n n O10 P2 A1IXG sing 42 n n C23 C22 A1IXG sing 43 n y C24 C23 A1IXG sing 44 n n C25 C23 A1IXG doub 45 n y C C25 A1IXG sing 46 n y C26 C25 A1IXG sing 47 n n P O11 A1IXG sing 48 n n C12 H9 A1IXG sing 49 n n C12 H8 A1IXG sing 50 n n C16 H11 A1IXG sing 51 n n C16 H12 A1IXG sing 52 n n C16 H10 A1IXG sing 53 n n C18 H14 A1IXG sing 54 n n C18 H15 A1IXG sing 55 n n C18 H13 A1IXG sing 56 n n C2 H1 A1IXG sing 57 n n C2 H A1IXG sing 58 n n C21 H17 A1IXG sing 59 n n C21 H16 A1IXG sing 60 n n C24 H20 A1IXG sing 61 n n C24 H19 A1IXG sing 62 n n C24 H18 A1IXG sing 63 n n C26 H23 A1IXG sing 64 n n C26 H22 A1IXG sing 65 n n C26 H21 A1IXG sing 66 n n C7 H4 A1IXG sing 67 n n C7 H2 A1IXG sing 68 n n C7 H3 A1IXG sing 69 n n C9 H7 A1IXG sing 70 n n C9 H5 A1IXG sing 71 n n C9 H6 A1IXG sing 72 n n O11 H24 A1IXG sing 73 n n O4 H25 A1IXG sing 74 n n O8 H26 A1IXG sing 75 n n # _atom_sites.entry_id 9HRZ _atom_sites.fract_transf_matrix[1][1] 0.022952 _atom_sites.fract_transf_matrix[1][2] 0.013251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDF A 1 101 101 BDF BDF . C 2 BDF A 1 102 102 BDF BDF . D 3 A1IXG A 1 103 103 A1IXG PCT . E 3 A1IXG A 1 104 104 A1IXG PCT . F 4 HOH A 1 201 108 HOH HOH . F 4 HOH A 2 202 190 HOH HOH . F 4 HOH A 3 203 3 HOH HOH . F 4 HOH A 4 204 4 HOH HOH . F 4 HOH A 5 205 21 HOH HOH . F 4 HOH A 6 206 11 HOH HOH . F 4 HOH A 7 207 9 HOH HOH . F 4 HOH A 8 208 181 HOH HOH . F 4 HOH A 9 209 28 HOH HOH . F 4 HOH A 10 210 59 HOH HOH . F 4 HOH A 11 211 69 HOH HOH . F 4 HOH A 12 212 63 HOH HOH . F 4 HOH A 13 213 19 HOH HOH . F 4 HOH A 14 214 51 HOH HOH . F 4 HOH A 15 215 38 HOH HOH . F 4 HOH A 16 216 66 HOH HOH . F 4 HOH A 17 217 7 HOH HOH . F 4 HOH A 18 218 2 HOH HOH . F 4 HOH A 19 219 180 HOH HOH . F 4 HOH A 20 220 95 HOH HOH . F 4 HOH A 21 221 102 HOH HOH . F 4 HOH A 22 222 10 HOH HOH . F 4 HOH A 23 223 6 HOH HOH . F 4 HOH A 24 224 103 HOH HOH . F 4 HOH A 25 225 57 HOH HOH . F 4 HOH A 26 226 30 HOH HOH . F 4 HOH A 27 227 27 HOH HOH . F 4 HOH A 28 228 22 HOH HOH . F 4 HOH A 29 229 52 HOH HOH . F 4 HOH A 30 230 20 HOH HOH . F 4 HOH A 31 231 24 HOH HOH . F 4 HOH A 32 232 37 HOH HOH . F 4 HOH A 33 233 29 HOH HOH . F 4 HOH A 34 234 36 HOH HOH . F 4 HOH A 35 235 185 HOH HOH . F 4 HOH A 36 236 31 HOH HOH . F 4 HOH A 37 237 176 HOH HOH . F 4 HOH A 38 238 15 HOH HOH . F 4 HOH A 39 239 5 HOH HOH . F 4 HOH A 40 240 124 HOH HOH . F 4 HOH A 41 241 123 HOH HOH . F 4 HOH A 42 242 135 HOH HOH . F 4 HOH A 43 243 72 HOH HOH . F 4 HOH A 44 244 32 HOH HOH . F 4 HOH A 45 245 48 HOH HOH . F 4 HOH A 46 246 62 HOH HOH . F 4 HOH A 47 247 188 HOH HOH . F 4 HOH A 48 248 39 HOH HOH . F 4 HOH A 49 249 175 HOH HOH . F 4 HOH A 50 250 74 HOH HOH . F 4 HOH A 51 251 12 HOH HOH . F 4 HOH A 52 252 23 HOH HOH . F 4 HOH A 53 253 49 HOH HOH . F 4 HOH A 54 254 14 HOH HOH . F 4 HOH A 55 255 45 HOH HOH . F 4 HOH A 56 256 148 HOH HOH . F 4 HOH A 57 257 118 HOH HOH . F 4 HOH A 58 258 26 HOH HOH . F 4 HOH A 59 259 182 HOH HOH . F 4 HOH A 60 260 192 HOH HOH . F 4 HOH A 61 261 76 HOH HOH . F 4 HOH A 62 262 104 HOH HOH . F 4 HOH A 63 263 64 HOH HOH . F 4 HOH A 64 264 8 HOH HOH . F 4 HOH A 65 265 41 HOH HOH . F 4 HOH A 66 266 42 HOH HOH . F 4 HOH A 67 267 186 HOH HOH . F 4 HOH A 68 268 174 HOH HOH . F 4 HOH A 69 269 73 HOH HOH . F 4 HOH A 70 270 97 HOH HOH . F 4 HOH A 71 271 132 HOH HOH . F 4 HOH A 72 272 56 HOH HOH . F 4 HOH A 73 273 18 HOH HOH . F 4 HOH A 74 274 40 HOH HOH . F 4 HOH A 75 275 35 HOH HOH . F 4 HOH A 76 276 75 HOH HOH . F 4 HOH A 77 277 178 HOH HOH . F 4 HOH A 78 278 78 HOH HOH . F 4 HOH A 79 279 86 HOH HOH . F 4 HOH A 80 280 1 HOH HOH . F 4 HOH A 81 281 55 HOH HOH . F 4 HOH A 82 282 90 HOH HOH . F 4 HOH A 83 283 137 HOH HOH . F 4 HOH A 84 284 99 HOH HOH . F 4 HOH A 85 285 120 HOH HOH . F 4 HOH A 86 286 61 HOH HOH . F 4 HOH A 87 287 193 HOH HOH . F 4 HOH A 88 288 100 HOH HOH . F 4 HOH A 89 289 189 HOH HOH . F 4 HOH A 90 290 13 HOH HOH . F 4 HOH A 91 291 101 HOH HOH . F 4 HOH A 92 292 98 HOH HOH . F 4 HOH A 93 293 187 HOH HOH . F 4 HOH A 94 294 161 HOH HOH . F 4 HOH A 95 295 184 HOH HOH . F 4 HOH A 96 296 84 HOH HOH . F 4 HOH A 97 297 177 HOH HOH . F 4 HOH A 98 298 191 HOH HOH . F 4 HOH A 99 299 81 HOH HOH . F 4 HOH A 100 300 33 HOH HOH . F 4 HOH A 101 301 34 HOH HOH . F 4 HOH A 102 302 60 HOH HOH . F 4 HOH A 103 303 153 HOH HOH . F 4 HOH A 104 304 17 HOH HOH . F 4 HOH A 105 305 183 HOH HOH . F 4 HOH A 106 306 116 HOH HOH . F 4 HOH A 107 307 85 HOH HOH . F 4 HOH A 108 308 43 HOH HOH . F 4 HOH A 109 309 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P A1IXG . . . D 3 1.941 -3.017 14.634 1 39.87 ? P A1IXG 103 A 1 HETATM 2 C C1 A1IXG . . . D 3 0.377 -3.417 17.654 1 21.15 ? C1 A1IXG 103 A 1 HETATM 3 O O1 A1IXG . . . D 3 0.463 -3.124 15.255 1 39.29 ? O1 A1IXG 103 A 1 HETATM 4 C C A1IXG . . . D 3 0.16 -3.924 16.374 1 31.44 ? C A1IXG 103 A 1 HETATM 5 O O A1IXG . . . D 3 2.774 -4.067 15.262 1 40.07 ? O A1IXG 103 A 1 HETATM 6 C C10 A1IXG . . . D 3 3.067 -1.549 16.511 1 34.06 ? C10 A1IXG 103 A 1 HETATM 7 C C11 A1IXG . . . D 3 0.039 -4.226 18.758 1 25.13 ? C11 A1IXG 103 A 1 HETATM 8 C C12 A1IXG . . . D 3 0.249 -3.687 20.165 1 23.95 ? C12 A1IXG 103 A 1 HETATM 9 C C13 A1IXG . . . D 3 1.529 -4.082 20.885 1 23.67 ? C13 A1IXG 103 A 1 HETATM 10 C C14 A1IXG . . . D 3 1.586 -5.322 21.518 1 35.16 ? C14 A1IXG 103 A 1 HETATM 11 C C15 A1IXG . . . D 3 2.709 -5.777 22.202 1 33.87 ? C15 A1IXG 103 A 1 HETATM 12 C C16 A1IXG . . . D 3 2.722 -7.133 22.864 1 46.19 ? C16 A1IXG 103 A 1 HETATM 13 C C17 A1IXG . . . D 3 3.837 -4.953 22.262 1 29.97 ? C17 A1IXG 103 A 1 HETATM 14 C C18 A1IXG . . . D 3 5.074 -5.414 22.991 1 34.21 ? C18 A1IXG 103 A 1 HETATM 15 C C19 A1IXG . . . D 3 3.79 -3.711 21.636 1 28.66 ? C19 A1IXG 103 A 1 HETATM 16 C C2 A1IXG . . . D 3 0.94 -2.014 17.83 1 22.83 ? C2 A1IXG 103 A 1 HETATM 17 C C20 A1IXG . . . D 3 2.665 -3.249 20.947 1 28.3 ? C20 A1IXG 103 A 1 HETATM 18 C C21 A1IXG . . . D 3 2.597 -1.889 20.269 1 20.24 ? C21 A1IXG 103 A 1 HETATM 19 C C22 A1IXG . . . D 3 -0.49 -5.492 18.509 1 32.34 ? C22 A1IXG 103 A 1 HETATM 20 C C23 A1IXG . . . D 3 -0.699 -5.992 17.228 1 40.73 ? C23 A1IXG 103 A 1 HETATM 21 C C24 A1IXG . . . D 3 -1.27 -7.372 17.011 1 32.96 ? C24 A1IXG 103 A 1 HETATM 22 C C25 A1IXG . . . D 3 -0.365 -5.188 16.134 1 33.24 ? C25 A1IXG 103 A 1 HETATM 23 C C26 A1IXG . . . D 3 -0.57 -5.693 14.727 1 38.39 ? C26 A1IXG 103 A 1 HETATM 24 C C3 A1IXG . . . D 3 2.436 -1.752 17.74 1 20.33 ? C3 A1IXG 103 A 1 HETATM 25 C C4 A1IXG . . . D 3 3.226 -1.681 18.903 1 23.03 ? C4 A1IXG 103 A 1 HETATM 26 C C5 A1IXG . . . D 3 4.587 -1.415 18.775 1 24.16 ? C5 A1IXG 103 A 1 HETATM 27 C C6 A1IXG . . . D 3 5.208 -1.223 17.549 1 34.85 ? C6 A1IXG 103 A 1 HETATM 28 C C7 A1IXG . . . D 3 6.689 -0.951 17.462 1 42.71 ? C7 A1IXG 103 A 1 HETATM 29 C C8 A1IXG . . . D 3 4.431 -1.291 16.389 1 25.88 ? C8 A1IXG 103 A 1 HETATM 30 C C9 A1IXG . . . D 3 5.069 -1.095 15.036 1 32.77 ? C9 A1IXG 103 A 1 HETATM 31 O O10 A1IXG . . . D 3 -0.858 -6.313 19.596 1 26.43 ? O10 A1IXG 103 A 1 HETATM 32 O O11 A1IXG . . . D 3 1.848 -2.875 13.165 1 45.55 ? O11 A1IXG 103 A 1 HETATM 33 O O2 A1IXG . . . D 3 5.388 -1.335 19.931 1 27.18 ? O2 A1IXG 103 A 1 HETATM 34 O O3 A1IXG . . . D 3 5.913 -3.747 19.641 1 36.74 ? O3 A1IXG 103 A 1 HETATM 35 O O4 A1IXG . . . D 3 7.324 -2.299 21.241 1 52.46 ? O4 A1IXG 103 A 1 HETATM 36 O O5 A1IXG . . . D 3 2.307 -1.613 15.325 1 25.61 ? O5 A1IXG 103 A 1 HETATM 37 O O6 A1IXG . . . D 3 0.449 -6.154 21.507 1 38.46 ? O6 A1IXG 103 A 1 HETATM 38 O O7 A1IXG . . . D 3 -0.65 -8.339 21.029 1 49.33 ? O7 A1IXG 103 A 1 HETATM 39 O O8 A1IXG . . . D 3 1.369 -7.58 19.605 1 40.29 ? O8 A1IXG 103 A 1 HETATM 40 O O9 A1IXG . . . D 3 4.922 -2.878 21.758 1 31.76 ? O9 A1IXG 103 A 1 HETATM 41 P P1 A1IXG . . . D 3 6.026 -2.641 20.616 1 34.26 ? P1 A1IXG 103 A 1 HETATM 42 P P2 A1IXG . . . D 3 0.153 -7.272 20.393 1 45.84 ? P2 A1IXG 103 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 431 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #