data_9HRZ # _model_server_result.job_id 53luPyfSGrmq-PHsyuQNpA _model_server_result.datetime_utc '2025-08-21 17:06:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hrz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 9HRZ # _exptl.entry_id 9HRZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 636.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description phosphated-cyclotrixylohydroquinoylene _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HRZ _cell.length_a 43.569 _cell.length_b 43.569 _cell.length_c 122.997 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HRZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C27 H27 O12 P3' _chem_comp.formula_weight 636.417 _chem_comp.id A1IXG _chem_comp.mon_nstd_flag . _chem_comp.name phosphated-cyclotrixylohydroquinoylene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O P A1IXG doub 1 n n P O1 A1IXG sing 2 n n O1 C A1IXG sing 3 n n C C1 A1IXG doub 4 n y C1 C2 A1IXG sing 5 n n C2 C3 A1IXG sing 6 n n C3 C4 A1IXG doub 7 n y C4 C5 A1IXG sing 8 n y O2 C5 A1IXG sing 9 n n P1 O2 A1IXG sing 10 n n O3 P1 A1IXG doub 11 n n O4 P1 A1IXG sing 12 n n C5 C6 A1IXG doub 13 n y C7 C6 A1IXG sing 14 n n C6 C8 A1IXG sing 15 n y C9 C8 A1IXG sing 16 n n C8 C10 A1IXG doub 17 n y C3 C10 A1IXG sing 18 n y C10 O5 A1IXG sing 19 n n O5 P A1IXG sing 20 n n C1 C11 A1IXG sing 21 n y C11 C12 A1IXG sing 22 n n C12 C13 A1IXG sing 23 n n C13 C14 A1IXG doub 24 n y O6 C14 A1IXG sing 25 n n P2 O6 A1IXG sing 26 n n O7 P2 A1IXG doub 27 n n O8 P2 A1IXG sing 28 n n C14 C15 A1IXG sing 29 n y C16 C15 A1IXG sing 30 n n C15 C17 A1IXG doub 31 n y C18 C17 A1IXG sing 32 n n C17 C19 A1IXG sing 33 n y C19 O9 A1IXG sing 34 n n O9 P1 A1IXG sing 35 n n C20 C19 A1IXG doub 36 n y C13 C20 A1IXG sing 37 n y C21 C20 A1IXG sing 38 n n C4 C21 A1IXG sing 39 n n C11 C22 A1IXG doub 40 n y C22 O10 A1IXG sing 41 n n O10 P2 A1IXG sing 42 n n C23 C22 A1IXG sing 43 n y C24 C23 A1IXG sing 44 n n C25 C23 A1IXG doub 45 n y C C25 A1IXG sing 46 n y C26 C25 A1IXG sing 47 n n P O11 A1IXG sing 48 n n C12 H9 A1IXG sing 49 n n C12 H8 A1IXG sing 50 n n C16 H11 A1IXG sing 51 n n C16 H12 A1IXG sing 52 n n C16 H10 A1IXG sing 53 n n C18 H14 A1IXG sing 54 n n C18 H15 A1IXG sing 55 n n C18 H13 A1IXG sing 56 n n C2 H1 A1IXG sing 57 n n C2 H A1IXG sing 58 n n C21 H17 A1IXG sing 59 n n C21 H16 A1IXG sing 60 n n C24 H20 A1IXG sing 61 n n C24 H19 A1IXG sing 62 n n C24 H18 A1IXG sing 63 n n C26 H23 A1IXG sing 64 n n C26 H22 A1IXG sing 65 n n C26 H21 A1IXG sing 66 n n C7 H4 A1IXG sing 67 n n C7 H2 A1IXG sing 68 n n C7 H3 A1IXG sing 69 n n C9 H7 A1IXG sing 70 n n C9 H5 A1IXG sing 71 n n C9 H6 A1IXG sing 72 n n O11 H24 A1IXG sing 73 n n O4 H25 A1IXG sing 74 n n O8 H26 A1IXG sing 75 n n # _atom_sites.entry_id 9HRZ _atom_sites.fract_transf_matrix[1][1] 0.022952 _atom_sites.fract_transf_matrix[1][2] 0.013251 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDF A 1 101 101 BDF BDF . C 2 BDF A 1 102 102 BDF BDF . D 3 A1IXG A 1 103 103 A1IXG PCT . E 3 A1IXG A 1 104 104 A1IXG PCT . F 4 HOH A 1 201 108 HOH HOH . F 4 HOH A 2 202 190 HOH HOH . F 4 HOH A 3 203 3 HOH HOH . F 4 HOH A 4 204 4 HOH HOH . F 4 HOH A 5 205 21 HOH HOH . F 4 HOH A 6 206 11 HOH HOH . F 4 HOH A 7 207 9 HOH HOH . F 4 HOH A 8 208 181 HOH HOH . F 4 HOH A 9 209 28 HOH HOH . F 4 HOH A 10 210 59 HOH HOH . F 4 HOH A 11 211 69 HOH HOH . F 4 HOH A 12 212 63 HOH HOH . F 4 HOH A 13 213 19 HOH HOH . F 4 HOH A 14 214 51 HOH HOH . F 4 HOH A 15 215 38 HOH HOH . F 4 HOH A 16 216 66 HOH HOH . F 4 HOH A 17 217 7 HOH HOH . F 4 HOH A 18 218 2 HOH HOH . F 4 HOH A 19 219 180 HOH HOH . F 4 HOH A 20 220 95 HOH HOH . F 4 HOH A 21 221 102 HOH HOH . F 4 HOH A 22 222 10 HOH HOH . F 4 HOH A 23 223 6 HOH HOH . F 4 HOH A 24 224 103 HOH HOH . F 4 HOH A 25 225 57 HOH HOH . F 4 HOH A 26 226 30 HOH HOH . F 4 HOH A 27 227 27 HOH HOH . F 4 HOH A 28 228 22 HOH HOH . F 4 HOH A 29 229 52 HOH HOH . F 4 HOH A 30 230 20 HOH HOH . F 4 HOH A 31 231 24 HOH HOH . F 4 HOH A 32 232 37 HOH HOH . F 4 HOH A 33 233 29 HOH HOH . F 4 HOH A 34 234 36 HOH HOH . F 4 HOH A 35 235 185 HOH HOH . F 4 HOH A 36 236 31 HOH HOH . F 4 HOH A 37 237 176 HOH HOH . F 4 HOH A 38 238 15 HOH HOH . F 4 HOH A 39 239 5 HOH HOH . F 4 HOH A 40 240 124 HOH HOH . F 4 HOH A 41 241 123 HOH HOH . F 4 HOH A 42 242 135 HOH HOH . F 4 HOH A 43 243 72 HOH HOH . F 4 HOH A 44 244 32 HOH HOH . F 4 HOH A 45 245 48 HOH HOH . F 4 HOH A 46 246 62 HOH HOH . F 4 HOH A 47 247 188 HOH HOH . F 4 HOH A 48 248 39 HOH HOH . F 4 HOH A 49 249 175 HOH HOH . F 4 HOH A 50 250 74 HOH HOH . F 4 HOH A 51 251 12 HOH HOH . F 4 HOH A 52 252 23 HOH HOH . F 4 HOH A 53 253 49 HOH HOH . F 4 HOH A 54 254 14 HOH HOH . F 4 HOH A 55 255 45 HOH HOH . F 4 HOH A 56 256 148 HOH HOH . F 4 HOH A 57 257 118 HOH HOH . F 4 HOH A 58 258 26 HOH HOH . F 4 HOH A 59 259 182 HOH HOH . F 4 HOH A 60 260 192 HOH HOH . F 4 HOH A 61 261 76 HOH HOH . F 4 HOH A 62 262 104 HOH HOH . F 4 HOH A 63 263 64 HOH HOH . F 4 HOH A 64 264 8 HOH HOH . F 4 HOH A 65 265 41 HOH HOH . F 4 HOH A 66 266 42 HOH HOH . F 4 HOH A 67 267 186 HOH HOH . F 4 HOH A 68 268 174 HOH HOH . F 4 HOH A 69 269 73 HOH HOH . F 4 HOH A 70 270 97 HOH HOH . F 4 HOH A 71 271 132 HOH HOH . F 4 HOH A 72 272 56 HOH HOH . F 4 HOH A 73 273 18 HOH HOH . F 4 HOH A 74 274 40 HOH HOH . F 4 HOH A 75 275 35 HOH HOH . F 4 HOH A 76 276 75 HOH HOH . F 4 HOH A 77 277 178 HOH HOH . F 4 HOH A 78 278 78 HOH HOH . F 4 HOH A 79 279 86 HOH HOH . F 4 HOH A 80 280 1 HOH HOH . F 4 HOH A 81 281 55 HOH HOH . F 4 HOH A 82 282 90 HOH HOH . F 4 HOH A 83 283 137 HOH HOH . F 4 HOH A 84 284 99 HOH HOH . F 4 HOH A 85 285 120 HOH HOH . F 4 HOH A 86 286 61 HOH HOH . F 4 HOH A 87 287 193 HOH HOH . F 4 HOH A 88 288 100 HOH HOH . F 4 HOH A 89 289 189 HOH HOH . F 4 HOH A 90 290 13 HOH HOH . F 4 HOH A 91 291 101 HOH HOH . F 4 HOH A 92 292 98 HOH HOH . F 4 HOH A 93 293 187 HOH HOH . F 4 HOH A 94 294 161 HOH HOH . F 4 HOH A 95 295 184 HOH HOH . F 4 HOH A 96 296 84 HOH HOH . F 4 HOH A 97 297 177 HOH HOH . F 4 HOH A 98 298 191 HOH HOH . F 4 HOH A 99 299 81 HOH HOH . F 4 HOH A 100 300 33 HOH HOH . F 4 HOH A 101 301 34 HOH HOH . F 4 HOH A 102 302 60 HOH HOH . F 4 HOH A 103 303 153 HOH HOH . F 4 HOH A 104 304 17 HOH HOH . F 4 HOH A 105 305 183 HOH HOH . F 4 HOH A 106 306 116 HOH HOH . F 4 HOH A 107 307 85 HOH HOH . F 4 HOH A 108 308 43 HOH HOH . F 4 HOH A 109 309 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P A1IXG . . . E 3 19.169 -9.176 -15.862 0.33 32.45 ? P A1IXG 104 A 1 HETATM 2 C C1 A1IXG . . . E 3 21.86 -10.526 -17.51 0.33 27.43 ? C1 A1IXG 104 A 1 HETATM 3 O O1 A1IXG . . . E 3 20.352 -8.746 -16.86 0.33 32.41 ? O1 A1IXG 104 A 1 HETATM 4 C C A1IXG . . . E 3 21.64 -9.321 -16.843 0.33 29.55 ? C A1IXG 104 A 1 HETATM 5 O O A1IXG . . . E 3 19.759 -9.97 -14.768 0.33 33.32 ? O A1IXG 104 A 1 HETATM 6 C C10 A1IXG . . . E 3 18.645 -11.592 -16.844 0.33 28 ? C10 A1IXG 104 A 1 HETATM 7 C C11 A1IXG . . . E 3 23.165 -11.063 -17.503 0.33 29.33 ? C11 A1IXG 104 A 1 HETATM 8 C C12 A1IXG . . . E 3 23.429 -12.362 -18.25 0.33 30.22 ? C12 A1IXG 104 A 1 HETATM 9 C C13 A1IXG . . . E 3 23.481 -13.693 -17.514 0.33 27.42 ? C13 A1IXG 104 A 1 HETATM 10 C C14 A1IXG . . . E 3 24.638 -14.103 -16.851 0.33 29.55 ? C14 A1IXG 104 A 1 HETATM 11 C C15 A1IXG . . . E 3 24.738 -15.319 -16.18 0.33 31.37 ? C15 A1IXG 104 A 1 HETATM 12 C C16 A1IXG . . . E 3 26.01 -15.714 -15.47 0.33 33.28 ? C16 A1IXG 104 A 1 HETATM 13 C C17 A1IXG . . . E 3 23.631 -16.174 -16.171 0.33 30.94 ? C17 A1IXG 104 A 1 HETATM 14 C C18 A1IXG . . . E 3 23.699 -17.499 -15.452 0.33 32.17 ? C18 A1IXG 104 A 1 HETATM 15 C C19 A1IXG . . . E 3 22.477 -15.774 -16.834 0.33 27.99 ? C19 A1IXG 104 A 1 HETATM 16 C C2 A1IXG . . . E 3 20.722 -11.215 -18.249 0.33 30.18 ? C2 A1IXG 104 A 1 HETATM 17 C C20 A1IXG . . . E 3 22.369 -14.557 -17.504 0.33 29.37 ? C20 A1IXG 104 A 1 HETATM 18 C C21 A1IXG . . . E 3 21.097 -14.152 -18.233 0.33 30.19 ? C21 A1IXG 104 A 1 HETATM 19 C C22 A1IXG . . . E 3 24.166 -10.362 -16.83 0.33 27.99 ? C22 A1IXG 104 A 1 HETATM 20 C C23 A1IXG . . . E 3 23.935 -9.163 -16.164 0.33 30.94 ? C23 A1IXG 104 A 1 HETATM 21 C C24 A1IXG . . . E 3 25.048 -8.445 -15.441 0.33 32.15 ? C24 A1IXG 104 A 1 HETATM 22 C C25 A1IXG . . . E 3 22.642 -8.63 -16.171 0.33 31.38 ? C25 A1IXG 104 A 1 HETATM 23 C C26 A1IXG . . . E 3 22.349 -7.334 -15.456 0.33 33.29 ? C26 A1IXG 104 A 1 HETATM 24 C C3 A1IXG . . . E 3 19.75 -12.123 -17.51 0.33 29.36 ? C3 A1IXG 104 A 1 HETATM 25 C C4 A1IXG . . . E 3 19.922 -13.521 -17.504 0.33 27.43 ? C4 A1IXG 104 A 1 HETATM 26 C C5 A1IXG . . . E 3 18.983 -14.302 -16.831 0.33 29.56 ? C5 A1IXG 104 A 1 HETATM 27 C C6 A1IXG . . . E 3 17.888 -13.766 -16.165 0.33 31.36 ? C6 A1IXG 104 A 1 HETATM 28 C C7 A1IXG . . . E 3 16.904 -14.653 -15.443 0.33 33.26 ? C7 A1IXG 104 A 1 HETATM 29 C C8 A1IXG . . . E 3 17.713 -12.378 -16.172 0.33 30.93 ? C8 A1IXG 104 A 1 HETATM 30 C C9 A1IXG . . . E 3 16.539 -11.756 -15.457 0.33 32.18 ? C9 A1IXG 104 A 1 HETATM 31 O O10 A1IXG . . . E 3 25.485 -10.863 -16.833 0.33 33.66 ? O10 A1IXG 104 A 1 HETATM 32 O O11 A1IXG . . . E 3 18.292 -8.014 -15.585 0.33 40.18 ? O11 A1IXG 104 A 1 HETATM 33 O O2 A1IXG . . . E 3 19.122 -15.706 -16.833 0.33 32.4 ? O2 A1IXG 104 A 1 HETATM 34 O O3 A1IXG . . . E 3 20.51 -15.596 -14.77 0.33 33.3 ? O3 A1IXG 104 A 1 HETATM 35 O O4 A1IXG . . . E 3 19.544 -17.846 -15.562 0.33 40.17 ? O4 A1IXG 104 A 1 HETATM 36 O O5 A1IXG . . . E 3 18.431 -10.198 -16.859 0.33 33.66 ? O5 A1IXG 104 A 1 HETATM 37 O O6 A1IXG . . . E 3 25.777 -13.273 -16.869 0.33 32.4 ? O6 A1IXG 104 A 1 HETATM 38 O O7 A1IXG . . . E 3 27.456 -11.865 -15.699 0.33 40.15 ? O7 A1IXG 104 A 1 HETATM 39 O O8 A1IXG . . . E 3 25.103 -12.15 -14.693 0.33 33.32 ? O8 A1IXG 104 A 1 HETATM 40 O O9 A1IXG . . . E 3 21.381 -16.664 -16.831 0.33 33.67 ? O9 A1IXG 104 A 1 HETATM 41 P P1 A1IXG . . . E 3 20.113 -16.51 -15.858 0.33 32.39 ? P1 A1IXG 104 A 1 HETATM 42 P P2 A1IXG . . . E 3 25.997 -12.037 -15.866 0.33 32.39 ? P2 A1IXG 104 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #