data_9HSG # _model_server_result.job_id gWAiSgGe6eFsMXnI-MuYtw _model_server_result.datetime_utc '2025-02-23 23:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9HSG # _exptl.entry_id 9HSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9HSG _cell.length_a 50.267 _cell.length_b 70.805 _cell.length_c 118.166 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -50.267 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H26 N4 O11 P2' _chem_comp.formula_weight 488.324 _chem_comp.id CDC _chem_comp.mon_nstd_flag . _chem_comp.name "[2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CDC sing 70 n n N1 C6 CDC sing 71 n n N1 C1' CDC sing 72 n n C2 N3 CDC sing 73 n n C2 O2 CDC doub 74 n n N3 C4 CDC doub 75 n n C4 C5 CDC sing 76 n n C4 N4 CDC sing 77 n n C5 C6 CDC doub 78 n n C5 H5 CDC sing 79 n n C6 H6 CDC sing 80 n n N4 H41 CDC sing 81 n n N4 H42 CDC sing 82 n n C1' C2' CDC sing 83 n n C1' O4' CDC sing 84 n n C1' H1' CDC sing 85 n n C2' O2' CDC sing 86 n n C2' C3' CDC sing 87 n n C2' H2' CDC sing 88 n n O2' "HO'2" CDC sing 89 n n C3' C4' CDC sing 90 n n C3' O3' CDC sing 91 n n C3' H3' CDC sing 92 n n C4' O4' CDC sing 93 n n C4' C5' CDC sing 94 n n C4' H4' CDC sing 95 n n O3' H3T CDC sing 96 n n C5' O5' CDC sing 97 n n C5' "H5'1" CDC sing 98 n n C5' "H5'2" CDC sing 99 n n O5' PA CDC sing 100 n n PA O1A CDC doub 101 n n PA O2A CDC sing 102 n n PA O3A CDC sing 103 n n O2A HO2A CDC sing 104 n n O3A PB CDC sing 105 n n PB O1B CDC sing 106 n n PB O2B CDC sing 107 n n PB O3B CDC doub 108 n n O1B C14 CDC sing 109 n n C14 C15 CDC sing 110 n n C14 H141 CDC sing 111 n n C14 H142 CDC sing 112 n n C15 N11 CDC sing 113 n n C15 H151 CDC sing 114 n n C15 H152 CDC sing 115 n n N11 C16 CDC sing 116 n n N11 C17 CDC sing 117 n n N11 C18 CDC sing 118 n n C16 H161 CDC sing 119 n n C16 H162 CDC sing 120 n n C16 H163 CDC sing 121 n n C17 H171 CDC sing 122 n n C17 H172 CDC sing 123 n n C17 H173 CDC sing 124 n n C18 H181 CDC sing 125 n n C18 H182 CDC sing 126 n n C18 H183 CDC sing 127 n n # _atom_sites.entry_id 9HSG _atom_sites.fract_transf_matrix[1][1] 0.019894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008463 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CDC A 1 801 1 CDC LIG . C 3 HOH A 1 901 7 HOH HOH . C 3 HOH A 2 902 9 HOH HOH . C 3 HOH A 3 903 1 HOH HOH . C 3 HOH A 4 904 19 HOH HOH . C 3 HOH A 5 905 3 HOH HOH . C 3 HOH A 6 906 12 HOH HOH . C 3 HOH A 7 907 4 HOH HOH . C 3 HOH A 8 908 17 HOH HOH . C 3 HOH A 9 909 13 HOH HOH . C 3 HOH A 10 910 6 HOH HOH . C 3 HOH A 11 911 20 HOH HOH . C 3 HOH A 12 912 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CDC . . . B 2 -14.834 -8.813 -17.571 1 65.11 ? N1 CDC 801 A 1 HETATM 2 C C2 CDC . . . B 2 -13.856 -7.755 -17.932 1 70.91 ? C2 CDC 801 A 1 HETATM 3 N N3 CDC . . . B 2 -13.582 -6.898 -16.803 1 69.17 ? N3 CDC 801 A 1 HETATM 4 C C4 CDC . . . B 2 -14.136 -7.037 -15.583 1 69.64 ? C4 CDC 801 A 1 HETATM 5 C C5 CDC . . . B 2 -15.095 -8.109 -15.306 1 67.55 ? C5 CDC 801 A 1 HETATM 6 C C6 CDC . . . B 2 -15.387 -8.95 -16.342 1 62.81 ? C6 CDC 801 A 1 HETATM 7 O O2 CDC . . . B 2 -13.379 -7.639 -18.997 1 74.46 ? O2 CDC 801 A 1 HETATM 8 N N4 CDC . . . B 2 -13.784 -6.151 -14.604 1 82.05 ? N4 CDC 801 A 1 HETATM 9 C C1' CDC . . . B 2 -15.156 -9.715 -18.669 1 62.21 ? C1' CDC 801 A 1 HETATM 10 C C2' CDC . . . B 2 -14.688 -11.125 -18.301 1 67.45 ? C2' CDC 801 A 1 HETATM 11 O O2' CDC . . . B 2 -13.332 -11.316 -18.739 1 70.97 ? O2' CDC 801 A 1 HETATM 12 C C3' CDC . . . B 2 -15.609 -11.94 -19.216 1 65.73 ? C3' CDC 801 A 1 HETATM 13 C C4' CDC . . . B 2 -16.93 -11.075 -19.331 1 57.56 ? C4' CDC 801 A 1 HETATM 14 O O4' CDC . . . B 2 -16.582 -9.78 -18.861 1 63.3 ? O4' CDC 801 A 1 HETATM 15 O O3' CDC . . . B 2 -14.959 -12.116 -20.427 1 63.35 ? O3' CDC 801 A 1 HETATM 16 C C5' CDC . . . B 2 -18.039 -11.672 -18.435 1 62.61 ? C5' CDC 801 A 1 HETATM 17 O O5' CDC . . . B 2 -17.538 -11.983 -17.206 1 62.06 ? O5' CDC 801 A 1 HETATM 18 P PA CDC . . . B 2 -18.511 -12.382 -15.833 1 69.37 ? PA CDC 801 A 1 HETATM 19 O O1A CDC . . . B 2 -17.829 -11.967 -14.564 1 73.14 ? O1A CDC 801 A 1 HETATM 20 O O2A CDC . . . B 2 -19.825 -11.75 -16.159 1 64.06 ? O2A CDC 801 A 1 HETATM 21 O O3A CDC . . . B 2 -18.795 -13.957 -15.762 1 68.16 ? O3A CDC 801 A 1 HETATM 22 P PB CDC . . . B 2 -17.869 -15.115 -15.968 1 66.64 ? PB CDC 801 A 1 HETATM 23 O O1B CDC . . . B 2 -18.407 -16.217 -17.292 1 68.48 ? O1B CDC 801 A 1 HETATM 24 O O2B CDC . . . B 2 -16.515 -14.804 -16.529 1 65.11 ? O2B CDC 801 A 1 HETATM 25 O O3B CDC . . . B 2 -17.931 -16.06 -14.817 1 67.32 ? O3B CDC 801 A 1 HETATM 26 C C14 CDC . . . B 2 -18.139 -17.516 -17.234 1 69.38 ? C14 CDC 801 A 1 HETATM 27 C C15 CDC . . . B 2 -19.494 -18.329 -17.076 1 65.61 ? C15 CDC 801 A 1 HETATM 28 N N11 CDC . . . B 2 -19.46 -19.418 -18.102 1 67.31 ? N11 CDC 801 A 1 HETATM 29 C C16 CDC . . . B 2 -19.092 -18.827 -19.395 1 60.67 ? C16 CDC 801 A 1 HETATM 30 C C17 CDC . . . B 2 -18.445 -20.471 -17.74 1 66.95 ? C17 CDC 801 A 1 HETATM 31 C C18 CDC . . . B 2 -20.787 -20.033 -18.263 1 66.79 ? C18 CDC 801 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 31 #