data_9HSQ # _model_server_result.job_id sCIG8uFco0J0o-pxYMCIuw _model_server_result.datetime_utc '2025-04-23 14:39:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 9HSQ # _exptl.entry_id 9HSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 123.156 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(aminomethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9HSQ _cell.length_a 50.308 _cell.length_b 69.725 _cell.length_c 119.218 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -69.725 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H9 N3' _chem_comp.formula_weight 123.156 _chem_comp.id 9NN _chem_comp.mon_nstd_flag . _chem_comp.name 4-(aminomethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 9NN sing 1 n n C02 C03 9NN sing 2 n n C03 C08 9NN doub 3 n y C03 C04 9NN sing 4 n y C08 C07 9NN sing 5 n y C04 C05 9NN doub 6 n y C07 N09 9NN sing 7 n n C07 N06 9NN doub 8 n y C05 N06 9NN sing 9 n y C02 H1 9NN sing 10 n n C02 H2 9NN sing 11 n n C04 H3 9NN sing 12 n n C05 H4 9NN sing 13 n n C08 H5 9NN sing 14 n n N01 H6 9NN sing 15 n n N01 H7 9NN sing 16 n n N09 H9 9NN sing 17 n n N09 H10 9NN sing 18 n n # _atom_sites.entry_id 9HSQ _atom_sites.fract_transf_matrix[1][1] 0.019878 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9NN A 1 801 801 9NN LIG . C 2 9NN A 1 802 802 9NN LIG . D 3 HOH A 1 901 75 HOH HOH . D 3 HOH A 2 902 27 HOH HOH . D 3 HOH A 3 903 12 HOH HOH . D 3 HOH A 4 904 33 HOH HOH . D 3 HOH A 5 905 37 HOH HOH . D 3 HOH A 6 906 32 HOH HOH . D 3 HOH A 7 907 2 HOH HOH . D 3 HOH A 8 908 16 HOH HOH . D 3 HOH A 9 909 5 HOH HOH . D 3 HOH A 10 910 43 HOH HOH . D 3 HOH A 11 911 23 HOH HOH . D 3 HOH A 12 912 29 HOH HOH . D 3 HOH A 13 913 3 HOH HOH . D 3 HOH A 14 914 47 HOH HOH . D 3 HOH A 15 915 49 HOH HOH . D 3 HOH A 16 916 59 HOH HOH . D 3 HOH A 17 917 6 HOH HOH . D 3 HOH A 18 918 45 HOH HOH . D 3 HOH A 19 919 65 HOH HOH . D 3 HOH A 20 920 38 HOH HOH . D 3 HOH A 21 921 11 HOH HOH . D 3 HOH A 22 922 20 HOH HOH . D 3 HOH A 23 923 7 HOH HOH . D 3 HOH A 24 924 63 HOH HOH . D 3 HOH A 25 925 1 HOH HOH . D 3 HOH A 26 926 48 HOH HOH . D 3 HOH A 27 927 8 HOH HOH . D 3 HOH A 28 928 14 HOH HOH . D 3 HOH A 29 929 9 HOH HOH . D 3 HOH A 30 930 19 HOH HOH . D 3 HOH A 31 931 21 HOH HOH . D 3 HOH A 32 932 50 HOH HOH . D 3 HOH A 33 933 39 HOH HOH . D 3 HOH A 34 934 26 HOH HOH . D 3 HOH A 35 935 42 HOH HOH . D 3 HOH A 36 936 53 HOH HOH . D 3 HOH A 37 937 55 HOH HOH . D 3 HOH A 38 938 31 HOH HOH . D 3 HOH A 39 939 22 HOH HOH . D 3 HOH A 40 940 34 HOH HOH . D 3 HOH A 41 941 41 HOH HOH . D 3 HOH A 42 942 70 HOH HOH . D 3 HOH A 43 943 13 HOH HOH . D 3 HOH A 44 944 62 HOH HOH . D 3 HOH A 45 945 10 HOH HOH . D 3 HOH A 46 946 28 HOH HOH . D 3 HOH A 47 947 4 HOH HOH . D 3 HOH A 48 948 18 HOH HOH . D 3 HOH A 49 949 73 HOH HOH . D 3 HOH A 50 950 64 HOH HOH . D 3 HOH A 51 951 60 HOH HOH . D 3 HOH A 52 952 74 HOH HOH . D 3 HOH A 53 953 57 HOH HOH . D 3 HOH A 54 954 68 HOH HOH . D 3 HOH A 55 955 61 HOH HOH . D 3 HOH A 56 956 69 HOH HOH . D 3 HOH A 57 957 51 HOH HOH . D 3 HOH A 58 958 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 9NN . . . C 2 -5.895 -15.145 -18.924 1 58.29 ? C02 9NN 802 A 1 HETATM 2 C C03 9NN . . . C 2 -6.159 -16.254 -17.943 1 58.77 ? C03 9NN 802 A 1 HETATM 3 C C04 9NN . . . C 2 -5.58 -16.234 -16.673 1 61.98 ? C04 9NN 802 A 1 HETATM 4 C C05 9NN . . . C 2 -5.856 -17.294 -15.8 1 62.28 ? C05 9NN 802 A 1 HETATM 5 C C07 9NN . . . C 2 -7.206 -18.346 -17.349 1 61.67 ? C07 9NN 802 A 1 HETATM 6 C C08 9NN . . . C 2 -6.98 -17.322 -18.294 1 60.88 ? C08 9NN 802 A 1 HETATM 7 N N01 9NN . . . C 2 -4.461 -14.953 -19.152 1 61.33 ? N01 9NN 802 A 1 HETATM 8 N N06 9NN . . . C 2 -6.65 -18.349 -16.087 1 63.4 ? N06 9NN 802 A 1 HETATM 9 N N09 9NN . . . C 2 -8.018 -19.429 -17.652 1 62.69 ? N09 9NN 802 A 1 HETATM 10 H H1 9NN . . . C 2 -6.381 -14.211 -18.558 1 69.97 ? H1 9NN 802 A 1 HETATM 11 H H2 9NN . . . C 2 -6.435 -15.363 -19.874 1 69.97 ? H2 9NN 802 A 1 HETATM 12 H H3 9NN . . . C 2 -4.931 -15.432 -16.348 1 74.4 ? H3 9NN 802 A 1 HETATM 13 H H4 9NN . . . C 2 -5.432 -17.34 -14.794 1 74.77 ? H4 9NN 802 A 1 HETATM 14 H H5 9NN . . . C 2 -7.441 -17.37 -19.281 1 73.08 ? H5 9NN 802 A 1 HETATM 15 H H6 9NN . . . C 2 -4.276 -14.256 -19.877 1 73.62 ? H6 9NN 802 A 1 HETATM 16 H H7 9NN . . . C 2 -3.988 -15.814 -19.417 1 73.62 ? H7 9NN 802 A 1 HETATM 17 H H9 9NN . . . C 2 -8.715 -19.345 -18.364 1 75.26 ? H9 9NN 802 A 1 HETATM 18 H H10 9NN . . . C 2 -7.937 -20.291 -17.163 1 75.26 ? H10 9NN 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 18 #