data_9HST # _model_server_result.job_id i59I03byFKJlqWUy69vzFw _model_server_result.datetime_utc '2025-03-25 01:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9HST # _exptl.entry_id 9HST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 100.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9HST _cell.length_a 50.48 _cell.length_b 69.94 _cell.length_c 118.565 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HST _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -69.94 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H8 N2 O' _chem_comp.formula_weight 100.119 _chem_comp.id XJJ _chem_comp.mon_nstd_flag . _chem_comp.name piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 O01 XJJ doub 376 n n C03 C02 XJJ sing 377 n n N04 C03 XJJ sing 378 n n C05 N04 XJJ sing 379 n n C06 C05 XJJ sing 380 n n N07 C06 XJJ sing 381 n n C02 N07 XJJ sing 382 n n C03 H031 XJJ sing 383 n n C03 H032 XJJ sing 384 n n N04 H041 XJJ sing 385 n n C05 H051 XJJ sing 386 n n C05 H052 XJJ sing 387 n n C06 H061 XJJ sing 388 n n C06 H062 XJJ sing 389 n n N07 H071 XJJ sing 390 n n # _atom_sites.entry_id 9HST _atom_sites.fract_transf_matrix[1][1] 0.01981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XJJ A 1 801 801 XJJ LIG . C 3 HOH A 1 901 16 HOH HOH . C 3 HOH A 2 902 5 HOH HOH . C 3 HOH A 3 903 4 HOH HOH . C 3 HOH A 4 904 14 HOH HOH . C 3 HOH A 5 905 7 HOH HOH . C 3 HOH A 6 906 10 HOH HOH . C 3 HOH A 7 907 13 HOH HOH . C 3 HOH A 8 908 17 HOH HOH . C 3 HOH A 9 909 3 HOH HOH . C 3 HOH A 10 910 15 HOH HOH . C 3 HOH A 11 911 6 HOH HOH . C 3 HOH A 12 912 12 HOH HOH . C 3 HOH A 13 913 8 HOH HOH . C 3 HOH A 14 914 2 HOH HOH . C 3 HOH A 15 915 9 HOH HOH . C 3 HOH A 16 916 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 XJJ . . . B 2 -7.323 -13.567 -16.999 1 79.82 ? O01 XJJ 801 A 1 HETATM 2 C C02 XJJ . . . B 2 -6.975 -14.692 -17.405 1 80.92 ? C02 XJJ 801 A 1 HETATM 3 C C03 XJJ . . . B 2 -5.669 -15.414 -17.104 1 72.82 ? C03 XJJ 801 A 1 HETATM 4 N N04 XJJ . . . B 2 -5.953 -16.751 -16.555 1 73.24 ? N04 XJJ 801 A 1 HETATM 5 C C05 XJJ . . . B 2 -6.605 -17.572 -17.575 1 77.8 ? C05 XJJ 801 A 1 HETATM 6 C C06 XJJ . . . B 2 -7.347 -16.757 -18.68 1 79.45 ? C06 XJJ 801 A 1 HETATM 7 N N07 XJJ . . . B 2 -7.797 -15.457 -18.226 1 88.76 ? N07 XJJ 801 A 1 HETATM 8 H H031 XJJ . . . B 2 -5.044 -14.829 -16.394 1 87.41 ? H031 XJJ 801 A 1 HETATM 9 H H032 XJJ . . . B 2 -5.039 -15.496 -18.015 1 87.41 ? H032 XJJ 801 A 1 HETATM 10 H H041 XJJ . . . B 2 -6.514 -16.682 -15.699 1 87.92 ? H041 XJJ 801 A 1 HETATM 11 H H051 XJJ . . . B 2 -5.834 -18.231 -18.031 1 93.39 ? H051 XJJ 801 A 1 HETATM 12 H H052 XJJ . . . B 2 -7.31 -18.263 -17.063 1 93.39 ? H052 XJJ 801 A 1 HETATM 13 H H061 XJJ . . . B 2 -6.691 -16.629 -19.569 1 95.36 ? H061 XJJ 801 A 1 HETATM 14 H H062 XJJ . . . B 2 -8.217 -17.334 -19.063 1 95.36 ? H062 XJJ 801 A 1 HETATM 15 H H071 XJJ . . . B 2 -8.365 -14.944 -18.897 1 106.54 ? H071 XJJ 801 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #