data_9HVP # _model_server_result.job_id w5ySeAMFsDoITWtIHQMoGA _model_server_result.datetime_utc '2024-11-05 04:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9hvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":100}' # _entry.id 9HVP # _exptl.entry_id 9HVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 736.896 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'benzyl [(1R,4S,6S,9R)-4,6-dibenzyl-5-hydroxy-1,9-bis(1-methylethyl)-2,8,11-trioxo-13-phenyl-12-oxa-3,7,10-triazatridec-1-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9HVP _cell.length_a 63.3 _cell.length_b 63.3 _cell.length_c 83.6 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9HVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C43 H52 N4 O7' _chem_comp.formula_weight 736.896 _chem_comp.id 0E9 _chem_comp.mon_nstd_flag . _chem_comp.name 'benzyl [(1R,4S,6S,9R)-4,6-dibenzyl-5-hydroxy-1,9-bis(1-methylethyl)-2,8,11-trioxo-13-phenyl-12-oxa-3,7,10-triazatridec-1-yl]carbamate' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms A-74704 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 0E9 doub 1 n n C1 O2 0E9 sing 2 n n O2 C2 0E9 sing 3 n n C2 C3 0E9 sing 4 n n C2 H21 0E9 sing 5 n n C2 H22 0E9 sing 6 n n C3 C4 0E9 doub 7 n y C3 C8 0E9 sing 8 n y C4 C5 0E9 sing 9 n y C4 H41 0E9 sing 10 n n C5 C6 0E9 doub 11 n y C5 H51 0E9 sing 12 n n C6 C7 0E9 sing 13 n y C6 H61 0E9 sing 14 n n C7 C8 0E9 doub 15 n y C7 H71 0E9 sing 16 n n C8 H81 0E9 sing 17 n n N CA 0E9 sing 18 n n N H 0E9 sing 19 n n CA C 0E9 sing 20 n n CA CB 0E9 sing 21 n n CA HA 0E9 sing 22 n n C O 0E9 doub 23 n n CB CG1 0E9 sing 24 n n CB CG2 0E9 sing 25 n n CB HB 0E9 sing 26 n n CG1 HG11 0E9 sing 27 n n CG1 HG12 0E9 sing 28 n n CG1 HG13 0E9 sing 29 n n CG2 HG21 0E9 sing 30 n n CG2 HG22 0E9 sing 31 n n CG2 HG23 0E9 sing 32 n n C11 C21 0E9 sing 33 n n C11 C1A 0E9 sing 34 n n C11 H11 0E9 sing 35 n n C11 H12 0E9 sing 36 n n C21 N2 0E9 sing 37 n n C21 C31 0E9 sing 38 n n C21 H2 0E9 sing 39 n n N2 HN22 0E9 sing 40 n n C31 O3 0E9 sing 41 n n C31 C41 0E9 sing 42 n n C31 H3 0E9 sing 43 n n O3 HO3 0E9 sing 44 n n C41 N4 0E9 sing 45 n n C41 C51 0E9 sing 46 n n C41 H4 0E9 sing 47 n n N4 HN42 0E9 sing 48 n n C51 C1B 0E9 sing 49 n n C51 H511 0E9 sing 50 n n C51 H52 0E9 sing 51 n n C1A C2A 0E9 doub 52 n y C1A C6A 0E9 sing 53 n y C2A C3A 0E9 sing 54 n y C2A H2A 0E9 sing 55 n n C3A C4A 0E9 doub 56 n y C3A H3A 0E9 sing 57 n n C4A C5A 0E9 sing 58 n y C4A H4A 0E9 sing 59 n n C5A C6A 0E9 doub 60 n y C5A H5A 0E9 sing 61 n n C6A H6A 0E9 sing 62 n n C1B C2B 0E9 doub 63 n y C1B C6B 0E9 sing 64 n y C2B C3B 0E9 sing 65 n y C2B H2B 0E9 sing 66 n n C3B C4B 0E9 doub 67 n y C3B H3B 0E9 sing 68 n n C4B C5B 0E9 sing 69 n y C4B H4B 0E9 sing 70 n n C5B C6B 0E9 doub 71 n y C5B H5B 0E9 sing 72 n n C6B H6B 0E9 sing 73 n n N1 CA1 0E9 sing 74 n n N1 H1 0E9 sing 75 n n CA1 C9 0E9 sing 76 n n CA1 CB1 0E9 sing 77 n n CA1 HA1 0E9 sing 78 n n C9 O4 0E9 doub 79 n n CB1 CG11 0E9 sing 80 n n CB1 CG21 0E9 sing 81 n n CB1 HB1 0E9 sing 82 n n CG11 HG14 0E9 sing 83 n n CG11 HG15 0E9 sing 84 n n CG11 HG16 0E9 sing 85 n n CG21 HG24 0E9 sing 86 n n CG21 HG25 0E9 sing 87 n n CG21 HG26 0E9 sing 88 n n C12 O11 0E9 doub 89 n n C12 O21 0E9 sing 90 n n O21 C22 0E9 sing 91 n n C22 C32 0E9 sing 92 n n C22 H211 0E9 sing 93 n n C22 H221 0E9 sing 94 n n C32 C42 0E9 doub 95 n y C32 C81 0E9 sing 96 n y C42 C52 0E9 sing 97 n y C42 H411 0E9 sing 98 n n C52 C61 0E9 doub 99 n y C52 H512 0E9 sing 100 n n C61 C71 0E9 sing 101 n y C61 H611 0E9 sing 102 n n C71 C81 0E9 doub 103 n y C71 H711 0E9 sing 104 n n C81 H811 0E9 sing 105 n n C1 N 0E9 sing 106 n n C N2 0E9 sing 107 n n N4 C9 0E9 sing 108 n n N1 C12 0E9 sing 109 n n # _atom_sites.entry_id 9HVP _atom_sites.fract_transf_matrix[1][1] 0.015798 _atom_sites.fract_transf_matrix[1][2] 0.009121 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 0E9 A 1 100 100 0E9 0E9 . D 3 HOH A 1 105 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 0E9 . . . C 2 -12.083 14.594 33.261 1 10.4 ? C1 0E9 100 A 1 HETATM 2 O O1 0E9 . . . C 2 -12.6 15.649 33.662 1 10.4 ? O1 0E9 100 A 1 HETATM 3 O O2 0E9 . . . C 2 -12.601 13.312 33.668 1 10.4 ? O2 0E9 100 A 1 HETATM 4 C C2 0E9 . . . C 2 -13.299 13.009 34.848 1 10.4 ? C2 0E9 100 A 1 HETATM 5 C C3 0E9 . . . C 2 -12.826 11.956 35.916 1 10.4 ? C3 0E9 100 A 1 HETATM 6 C C4 0E9 . . . C 2 -12.548 10.611 35.557 1 10.4 ? C4 0E9 100 A 1 HETATM 7 C C5 0E9 . . . C 2 -12.215 9.655 36.514 1 10.4 ? C5 0E9 100 A 1 HETATM 8 C C6 0E9 . . . C 2 -12.138 10.02 37.837 1 10.4 ? C6 0E9 100 A 1 HETATM 9 C C7 0E9 . . . C 2 -12.395 11.324 38.205 1 10.4 ? C7 0E9 100 A 1 HETATM 10 C C8 0E9 . . . C 2 -12.736 12.301 37.276 1 10.4 ? C8 0E9 100 A 1 HETATM 11 N N 0E9 . . . C 2 -10.976 14.541 32.506 1 10.4 ? N 0E9 100 A 1 HETATM 12 C CA 0E9 . . . C 2 -10.225 15.69 32.02 1 10.4 ? CA 0E9 100 A 1 HETATM 13 C C 0E9 . . . C 2 -10.159 15.551 30.515 1 10.4 ? C 0E9 100 A 1 HETATM 14 O O 0E9 . . . C 2 -9.467 14.684 29.968 1 10.4 ? O 0E9 100 A 1 HETATM 15 C CB 0E9 . . . C 2 -8.749 15.738 32.572 1 10.4 ? CB 0E9 100 A 1 HETATM 16 C CG1 0E9 . . . C 2 -8.076 17.032 32.146 1 10.4 ? CG1 0E9 100 A 1 HETATM 17 C CG2 0E9 . . . C 2 -8.665 15.646 34.076 1 10.4 ? CG2 0E9 100 A 1 HETATM 18 C C11 0E9 . . . C 2 -12.397 16.245 27.955 1 10.4 ? C11 0E9 100 A 1 HETATM 19 C C21 0E9 . . . C 2 -10.988 16.53 28.401 1 10.4 ? C21 0E9 100 A 1 HETATM 20 N N2 0E9 . . . C 2 -10.92 16.447 29.878 1 10.4 ? N2 0E9 100 A 1 HETATM 21 C C31 0E9 . . . C 2 -10.355 17.698 27.688 1 10.4 ? C31 0E9 100 A 1 HETATM 22 O O3 0E9 . . . C 2 -10.555 18.735 28.572 1 10.4 ? O3 0E9 100 A 1 HETATM 23 C C41 0E9 . . . C 2 -8.816 17.54 27.467 1 10.4 ? C41 0E9 100 A 1 HETATM 24 N N4 0E9 . . . C 2 -8.621 17.469 26.005 1 10.4 ? N4 0E9 100 A 1 HETATM 25 C C51 0E9 . . . C 2 -7.911 18.643 28.082 1 10.4 ? C51 0E9 100 A 1 HETATM 26 C C1A 0E9 . . . C 2 -12.73 14.826 28.435 1 10.4 ? C1A 0E9 100 A 1 HETATM 27 C C2A 0E9 . . . C 2 -12.145 13.74 27.794 1 10.4 ? C2A 0E9 100 A 1 HETATM 28 C C3A 0E9 . . . C 2 -12.295 12.483 28.33 1 10.4 ? C3A 0E9 100 A 1 HETATM 29 C C4A 0E9 . . . C 2 -13.033 12.3 29.488 1 10.4 ? C4A 0E9 100 A 1 HETATM 30 C C5A 0E9 . . . C 2 -13.628 13.379 30.108 1 10.4 ? C5A 0E9 100 A 1 HETATM 31 C C6A 0E9 . . . C 2 -13.481 14.645 29.593 1 10.4 ? C6A 0E9 100 A 1 HETATM 32 C C1B 0E9 . . . C 2 -6.547 18.738 27.395 1 10.4 ? C1B 0E9 100 A 1 HETATM 33 C C2B 0E9 . . . C 2 -6.367 19.614 26.338 1 10.4 ? C2B 0E9 100 A 1 HETATM 34 C C3B 0E9 . . . C 2 -5.241 19.521 25.549 1 10.4 ? C3B 0E9 100 A 1 HETATM 35 C C4B 0E9 . . . C 2 -4.287 18.547 25.832 1 10.4 ? C4B 0E9 100 A 1 HETATM 36 C C5B 0E9 . . . C 2 -4.438 17.673 26.896 1 10.4 ? C5B 0E9 100 A 1 HETATM 37 C C6B 0E9 . . . C 2 -5.569 17.777 27.68 1 10.4 ? C6B 0E9 100 A 1 HETATM 38 N N1 0E9 . . . C 2 -7.043 16.775 23.406 1 10.4 ? N1 0E9 100 A 1 HETATM 39 C CA1 0E9 . . . C 2 -8.419 16.522 23.803 1 10.4 ? CA1 0E9 100 A 1 HETATM 40 C C9 0E9 . . . C 2 -8.366 16.331 25.321 1 10.4 ? C9 0E9 100 A 1 HETATM 41 O O4 0E9 . . . C 2 -7.988 15.256 25.827 1 10.4 ? O4 0E9 100 A 1 HETATM 42 C CB1 0E9 . . . C 2 -9.121 15.306 23.167 1 10.4 ? CB1 0E9 100 A 1 HETATM 43 C CG11 0E9 . . . C 2 -10.599 15.507 23.407 1 10.4 ? CG11 0E9 100 A 1 HETATM 44 C CG21 0E9 . . . C 2 -8.755 15.111 21.691 1 10.4 ? CG21 0E9 100 A 1 HETATM 45 C C12 0E9 . . . C 2 -6.751 17.802 22.604 1 10.4 ? C12 0E9 100 A 1 HETATM 46 O O11 0E9 . . . C 2 -7.563 18.41 21.875 1 10.4 ? O11 0E9 100 A 1 HETATM 47 O O21 0E9 . . . C 2 -5.4 18.133 22.514 1 10.4 ? O21 0E9 100 A 1 HETATM 48 C C22 0E9 . . . C 2 -4.683 18.441 21.398 1 10.4 ? C22 0E9 100 A 1 HETATM 49 C C32 0E9 . . . C 2 -3.283 17.845 21.482 1 10.4 ? C32 0E9 100 A 1 HETATM 50 C C42 0E9 . . . C 2 -2.208 18.66 21.769 1 10.4 ? C42 0E9 100 A 1 HETATM 51 C C52 0E9 . . . C 2 -0.979 18.067 21.96 1 10.4 ? C52 0E9 100 A 1 HETATM 52 C C61 0E9 . . . C 2 -0.823 16.692 21.873 1 10.4 ? C61 0E9 100 A 1 HETATM 53 C C71 0E9 . . . C 2 -1.904 15.897 21.579 1 10.4 ? C71 0E9 100 A 1 HETATM 54 C C81 0E9 . . . C 2 -3.138 16.468 21.374 1 10.4 ? C81 0E9 100 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #