data_9I2L # _model_server_result.job_id GTSBphqIj5IsldES_dMWrg _model_server_result.datetime_utc '2025-06-20 21:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9i2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 9I2L # _exptl.entry_id 9I2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9I2L _cell.length_a 83.746 _cell.length_b 97.98 _cell.length_c 70.472 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9I2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 54 B THR 53 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OD1 ASP 56 B ASP 55 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc3 A OG SER 158 B SER 157 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 A O ASN 161 B ASN 160 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc5 A OD1 ASP 300 B ASP 299 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 A OD2 ASP 300 B ASP 299 1_555 D CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 B O THR 54 A THR 53 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc8 B OD2 ASP 56 A ASP 55 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc9 B O SER 158 A SER 157 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc10 B OG SER 158 A SER 157 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc11 B O ASN 161 A ASN 160 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc12 B OD1 ASP 300 A ASP 299 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc13 B OD2 ASP 300 A ASP 299 1_555 F CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9I2L _atom_sites.fract_transf_matrix[1][1] 0.011941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CNC B 1 401 401 CNC CNC . D 3 CA B 1 402 1 CA CA . E 2 CNC A 1 401 401 CNC CNC . F 3 CA A 1 402 2 CA CA . G 4 HOH B 1 501 22 HOH HOH . G 4 HOH B 2 502 21 HOH HOH . G 4 HOH B 3 503 3 HOH HOH . G 4 HOH B 4 504 1 HOH HOH . G 4 HOH B 5 505 32 HOH HOH . G 4 HOH B 6 506 56 HOH HOH . G 4 HOH B 7 507 54 HOH HOH . G 4 HOH B 8 508 57 HOH HOH . G 4 HOH B 9 509 73 HOH HOH . G 4 HOH B 10 510 50 HOH HOH . G 4 HOH B 11 511 9 HOH HOH . G 4 HOH B 12 512 31 HOH HOH . G 4 HOH B 13 513 71 HOH HOH . G 4 HOH B 14 514 52 HOH HOH . G 4 HOH B 15 515 7 HOH HOH . G 4 HOH B 16 516 10 HOH HOH . G 4 HOH B 17 517 84 HOH HOH . G 4 HOH B 18 518 37 HOH HOH . G 4 HOH B 19 519 45 HOH HOH . G 4 HOH B 20 520 66 HOH HOH . G 4 HOH B 21 521 48 HOH HOH . G 4 HOH B 22 522 72 HOH HOH . G 4 HOH B 23 523 17 HOH HOH . G 4 HOH B 24 524 47 HOH HOH . G 4 HOH B 25 525 49 HOH HOH . G 4 HOH B 26 526 19 HOH HOH . G 4 HOH B 27 527 80 HOH HOH . H 4 HOH A 1 501 61 HOH HOH . H 4 HOH A 2 502 29 HOH HOH . H 4 HOH A 3 503 90 HOH HOH . H 4 HOH A 4 504 40 HOH HOH . H 4 HOH A 5 505 4 HOH HOH . H 4 HOH A 6 506 2 HOH HOH . H 4 HOH A 7 507 91 HOH HOH . H 4 HOH A 8 508 23 HOH HOH . H 4 HOH A 9 509 53 HOH HOH . H 4 HOH A 10 510 12 HOH HOH . H 4 HOH A 11 511 5 HOH HOH . H 4 HOH A 12 512 8 HOH HOH . H 4 HOH A 13 513 58 HOH HOH . H 4 HOH A 14 514 42 HOH HOH . H 4 HOH A 15 515 74 HOH HOH . H 4 HOH A 16 516 11 HOH HOH . H 4 HOH A 17 517 89 HOH HOH . H 4 HOH A 18 518 18 HOH HOH . H 4 HOH A 19 519 46 HOH HOH . H 4 HOH A 20 520 95 HOH HOH . H 4 HOH A 21 521 60 HOH HOH . H 4 HOH A 22 522 26 HOH HOH . H 4 HOH A 23 523 36 HOH HOH . H 4 HOH A 24 524 69 HOH HOH . H 4 HOH A 25 525 55 HOH HOH . H 4 HOH A 26 526 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.011 _atom_site.Cartn_y 31.539 _atom_site.Cartn_z 20.018 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #