data_9I2O # _model_server_result.job_id gaBwVZt95peGeRDASRAbrw _model_server_result.datetime_utc '2025-02-22 17:31:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9i2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 9I2O # _exptl.entry_id 9I2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9I2O _cell.length_a 81.75 _cell.length_b 81.75 _cell.length_c 55.009 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9I2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall 'P 65' _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 237 n n PG O2G MGT sing 238 n n PG O3G MGT sing 239 n n PG O3B MGT sing 240 n n O2G HOG2 MGT sing 241 n n O3G HOG3 MGT sing 242 n n O3B PB MGT sing 243 n n PB O1B MGT doub 244 n n PB O2B MGT sing 245 n n PB O3A MGT sing 246 n n O2B HOB2 MGT sing 247 n n O3A PA MGT sing 248 n n PA O1A MGT doub 249 n n PA O2A MGT sing 250 n n PA O5' MGT sing 251 n n O2A HOA2 MGT sing 252 n n O5' C5' MGT sing 253 n n C5' C4' MGT sing 254 n n C5' "H5'1" MGT sing 255 n n C5' "H5'2" MGT sing 256 n n C4' O4' MGT sing 257 n n C4' C3' MGT sing 258 n n C4' H4' MGT sing 259 n n O4' C1' MGT sing 260 n n C3' O3' MGT sing 261 n n C3' C2' MGT sing 262 n n C3' H3' MGT sing 263 n n O3' HO3' MGT sing 264 n n C2' O2' MGT sing 265 n n C2' C1' MGT sing 266 n n C2' H2' MGT sing 267 n n O2' HO2' MGT sing 268 n n C1' N9 MGT sing 269 n n C1' H1' MGT sing 270 n n N9 C8 MGT sing 271 n n N9 C4 MGT sing 272 n n C8 N7 MGT sing 273 n n C8 H81 MGT sing 274 n n C8 H82 MGT sing 275 n n N7 CM7 MGT sing 276 n n N7 C5 MGT sing 277 n n CM7 HM71 MGT sing 278 n n CM7 HM72 MGT sing 279 n n CM7 HM73 MGT sing 280 n n C5 C6 MGT sing 281 n n C5 C4 MGT doub 282 n n C6 O6 MGT doub 283 n n C6 N1 MGT sing 284 n n N1 C2 MGT sing 285 n n N1 HN1 MGT sing 286 n n C2 N2 MGT sing 287 n n C2 N3 MGT doub 288 n n N2 HN21 MGT sing 289 n n N2 HN22 MGT sing 290 n n N3 C4 MGT sing 291 n n # _atom_sites.entry_id 9I2O _atom_sites.fract_transf_matrix[1][1] 0.012232 _atom_sites.fract_transf_matrix[1][2] 0.007062 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGT A 1 501 501 MGT MGT . C 3 HOH A 1 601 60 HOH HOH . C 3 HOH A 2 602 75 HOH HOH . C 3 HOH A 3 603 32 HOH HOH . C 3 HOH A 4 604 26 HOH HOH . C 3 HOH A 5 605 6 HOH HOH . C 3 HOH A 6 606 45 HOH HOH . C 3 HOH A 7 607 70 HOH HOH . C 3 HOH A 8 608 42 HOH HOH . C 3 HOH A 9 609 23 HOH HOH . C 3 HOH A 10 610 37 HOH HOH . C 3 HOH A 11 611 7 HOH HOH . C 3 HOH A 12 612 55 HOH HOH . C 3 HOH A 13 613 51 HOH HOH . C 3 HOH A 14 614 5 HOH HOH . C 3 HOH A 15 615 86 HOH HOH . C 3 HOH A 16 616 40 HOH HOH . C 3 HOH A 17 617 22 HOH HOH . C 3 HOH A 18 618 21 HOH HOH . C 3 HOH A 19 619 54 HOH HOH . C 3 HOH A 20 620 44 HOH HOH . C 3 HOH A 21 621 36 HOH HOH . C 3 HOH A 22 622 61 HOH HOH . C 3 HOH A 23 623 14 HOH HOH . C 3 HOH A 24 624 77 HOH HOH . C 3 HOH A 25 625 48 HOH HOH . C 3 HOH A 26 626 57 HOH HOH . C 3 HOH A 27 627 46 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 41 HOH HOH . C 3 HOH A 30 630 24 HOH HOH . C 3 HOH A 31 631 43 HOH HOH . C 3 HOH A 32 632 56 HOH HOH . C 3 HOH A 33 633 58 HOH HOH . C 3 HOH A 34 634 47 HOH HOH . C 3 HOH A 35 635 1 HOH HOH . C 3 HOH A 36 636 17 HOH HOH . C 3 HOH A 37 637 76 HOH HOH . C 3 HOH A 38 638 30 HOH HOH . C 3 HOH A 39 639 72 HOH HOH . C 3 HOH A 40 640 59 HOH HOH . C 3 HOH A 41 641 9 HOH HOH . C 3 HOH A 42 642 68 HOH HOH . C 3 HOH A 43 643 62 HOH HOH . C 3 HOH A 44 644 67 HOH HOH . C 3 HOH A 45 645 35 HOH HOH . C 3 HOH A 46 646 20 HOH HOH . C 3 HOH A 47 647 81 HOH HOH . C 3 HOH A 48 648 65 HOH HOH . C 3 HOH A 49 649 15 HOH HOH . C 3 HOH A 50 650 3 HOH HOH . C 3 HOH A 51 651 80 HOH HOH . C 3 HOH A 52 652 74 HOH HOH . C 3 HOH A 53 653 10 HOH HOH . C 3 HOH A 54 654 33 HOH HOH . C 3 HOH A 55 655 50 HOH HOH . C 3 HOH A 56 656 71 HOH HOH . C 3 HOH A 57 657 83 HOH HOH . C 3 HOH A 58 658 49 HOH HOH . C 3 HOH A 59 659 19 HOH HOH . C 3 HOH A 60 660 2 HOH HOH . C 3 HOH A 61 661 13 HOH HOH . C 3 HOH A 62 662 63 HOH HOH . C 3 HOH A 63 663 4 HOH HOH . C 3 HOH A 64 664 29 HOH HOH . C 3 HOH A 65 665 79 HOH HOH . C 3 HOH A 66 666 53 HOH HOH . C 3 HOH A 67 667 82 HOH HOH . C 3 HOH A 68 668 85 HOH HOH . C 3 HOH A 69 669 38 HOH HOH . C 3 HOH A 70 670 39 HOH HOH . C 3 HOH A 71 671 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . B 2 -49.21 -12.608 5.538 0.88 78.69 ? PG MGT 501 A 1 HETATM 2 O O1G MGT . . . B 2 -48.078 -12.375 4.562 0.88 62.28 ? O1G MGT 501 A 1 HETATM 3 O O2G MGT . . . B 2 -48.757 -13.309 6.804 0.88 67.03 ? O2G MGT 501 A 1 HETATM 4 O O3G MGT . . . B 2 -50.402 -13.286 4.895 0.88 74.74 ? O3G MGT 501 A 1 HETATM 5 O O3B MGT . . . B 2 -49.75 -11.147 6.072 0.88 68.37 ? O3B MGT 501 A 1 HETATM 6 P PB MGT . . . B 2 -50.246 -9.721 5.536 0.88 71.51 ? PB MGT 501 A 1 HETATM 7 O O1B MGT . . . B 2 -50.642 -8.897 6.702 0.88 61.95 ? O1B MGT 501 A 1 HETATM 8 O O2B MGT . . . B 2 -51.202 -9.917 4.418 0.88 65.75 ? O2B MGT 501 A 1 HETATM 9 O O3A MGT . . . B 2 -48.887 -9.136 4.928 0.88 59.24 ? O3A MGT 501 A 1 HETATM 10 P PA MGT . . . B 2 -47.638 -8.33 5.527 0.88 62.48 ? PA MGT 501 A 1 HETATM 11 O O1A MGT . . . B 2 -47.605 -8.492 7.002 0.88 47.35 ? O1A MGT 501 A 1 HETATM 12 O O2A MGT . . . B 2 -46.458 -8.734 4.727 0.88 50.3 ? O2A MGT 501 A 1 HETATM 13 O O5' MGT . . . B 2 -48.006 -6.809 5.173 0.88 49.47 ? O5' MGT 501 A 1 HETATM 14 C C5' MGT . . . B 2 -48.765 -5.974 6.082 0.88 43.3 ? C5' MGT 501 A 1 HETATM 15 C C4' MGT . . . B 2 -49.699 -5.067 5.313 0.88 38.72 ? C4' MGT 501 A 1 HETATM 16 O O4' MGT . . . B 2 -48.994 -4.396 4.238 0.88 32.36 ? O4' MGT 501 A 1 HETATM 17 C C3' MGT . . . B 2 -50.879 -5.8 4.673 0.88 36.82 ? C3' MGT 501 A 1 HETATM 18 O O3' MGT . . . B 2 -52.091 -5.063 4.772 0.88 42.21 ? O3' MGT 501 A 1 HETATM 19 C C2' MGT . . . B 2 -50.436 -5.954 3.215 0.88 33.91 ? C2' MGT 501 A 1 HETATM 20 O O2' MGT . . . B 2 -51.549 -6.004 2.33 0.88 38.83 ? O2' MGT 501 A 1 HETATM 21 C C1' MGT . . . B 2 -49.646 -4.664 3.008 0.88 33.63 ? C1' MGT 501 A 1 HETATM 22 N N9 MGT . . . B 2 -48.702 -4.66 1.926 0.88 32.05 ? N9 MGT 501 A 1 HETATM 23 C C8 MGT . . . B 2 -47.369 -5.224 2.031 0.88 33.36 ? C8 MGT 501 A 1 HETATM 24 N N7 MGT . . . B 2 -46.847 -4.901 0.759 0.88 33.98 ? N7 MGT 501 A 1 HETATM 25 C CM7 MGT . . . B 2 -45.467 -5.214 0.437 0.88 28.51 ? CM7 MGT 501 A 1 HETATM 26 C C5 MGT . . . B 2 -47.716 -4.237 -0.036 0.88 29.82 ? C5 MGT 501 A 1 HETATM 27 C C6 MGT . . . B 2 -47.577 -3.739 -1.358 0.88 30.54 ? C6 MGT 501 A 1 HETATM 28 O O6 MGT . . . B 2 -46.628 -3.74 -2.124 0.88 27.79 ? O6 MGT 501 A 1 HETATM 29 N N1 MGT . . . B 2 -48.727 -3.15 -1.715 0.88 26.63 ? N1 MGT 501 A 1 HETATM 30 C C2 MGT . . . B 2 -49.814 -3.053 -0.937 0.88 32.59 ? C2 MGT 501 A 1 HETATM 31 N N2 MGT . . . B 2 -50.786 -2.507 -1.469 0.88 35.46 ? N2 MGT 501 A 1 HETATM 32 N N3 MGT . . . B 2 -49.948 -3.507 0.295 0.88 28.62 ? N3 MGT 501 A 1 HETATM 33 C C4 MGT . . . B 2 -48.882 -4.095 0.704 0.88 31.84 ? C4 MGT 501 A 1 HETATM 34 H "H5'1" MGT . . . B 2 -49.268 -6.531 6.711 0.88 51.95 ? "H5'1" MGT 501 A 1 HETATM 35 H "H5'2" MGT . . . B 2 -48.159 -5.447 6.641 0.88 51.95 ? "H5'2" MGT 501 A 1 HETATM 36 H H4' MGT . . . B 2 -50.01 -4.346 5.898 0.88 46.46 ? H4' MGT 501 A 1 HETATM 37 H H3' MGT . . . B 2 -51.037 -6.684 5.061 0.88 44.19 ? H3' MGT 501 A 1 HETATM 38 H HO3' MGT . . . B 2 -52.171 -4.727 3.996 0.88 50.65 ? HO3' MGT 501 A 1 HETATM 39 H H2' MGT . . . B 2 -49.921 -6.769 3.05 0.88 40.69 ? H2' MGT 501 A 1 HETATM 40 H HO2' MGT . . . B 2 -51.228 -5.631 1.636 0.88 46.59 ? HO2' MGT 501 A 1 HETATM 41 H H1' MGT . . . B 2 -50.269 -3.923 2.865 0.88 40.35 ? H1' MGT 501 A 1 HETATM 42 H H81 MGT . . . B 2 -47.392 -6.193 2.165 0.88 40.04 ? H81 MGT 501 A 1 HETATM 43 H H82 MGT . . . B 2 -46.848 -4.8 2.743 0.88 40.04 ? H82 MGT 501 A 1 HETATM 44 H HM71 MGT . . . B 2 -45.222 -4.835 -0.432 0.88 34.21 ? HM71 MGT 501 A 1 HETATM 45 H HM72 MGT . . . B 2 -45.333 -6.183 0.4 0.88 34.21 ? HM72 MGT 501 A 1 HETATM 46 H HM73 MGT . . . B 2 -44.864 -4.846 1.114 0.88 34.21 ? HM73 MGT 501 A 1 HETATM 47 H HN1 MGT . . . B 2 -48.81 -2.787 -2.515 0.88 31.96 ? HN1 MGT 501 A 1 HETATM 48 H HN21 MGT . . . B 2 -51.505 -2.44 -0.962 0.88 42.56 ? HN21 MGT 501 A 1 HETATM 49 H HN22 MGT . . . B 2 -50.659 -2.24 -2.302 0.88 42.56 ? HN22 MGT 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #