data_9I5W # _model_server_result.job_id uRFJ98Y7FToFCwAPJZ1IgQ _model_server_result.datetime_utc '2025-02-23 03:15:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9i5w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":504}' # _entry.id 9I5W # _exptl.entry_id 9I5W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9I5W _cell.length_a 63.791 _cell.length_b 96.202 _cell.length_c 118.786 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9I5W _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 314 1_555 A SG CYS 12 A CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 11 A CYS 321 1_555 A SG CYS 81 A CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf3 A SG CYS 40 A CYS 350 1_555 A SG CYS 113 A CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf4 A SG CYS 44 A CYS 354 1_555 A SG CYS 115 A CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 80 A CYS 390 1_555 B SG CYS 80 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 B SG CYS 4 B CYS 314 1_555 B SG CYS 12 B CYS 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 B SG CYS 11 B CYS 321 1_555 B SG CYS 81 B CYS 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf8 B SG CYS 40 B CYS 350 1_555 B SG CYS 113 B CYS 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 B SG CYS 44 B CYS 354 1_555 B SG CYS 115 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 9I5W _atom_sites.fract_transf_matrix[1][1] 0.015676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008419 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMS A 1 501 12 DMS DMS . D 3 SO4 A 1 502 1 SO4 SO4 . E 3 SO4 A 1 503 2 SO4 SO4 . F 3 SO4 A 1 504 3 SO4 SO4 . G 3 SO4 A 1 505 6 SO4 SO4 . H 2 DMS B 1 501 501 DMS DMS . I 2 DMS B 1 502 7 DMS DMS . J 2 DMS B 1 503 8 DMS DMS . K 2 DMS B 1 504 9 DMS DMS . L 2 DMS B 1 505 10 DMS DMS . M 3 SO4 B 1 506 4 SO4 SO4 . N 3 SO4 B 1 507 5 SO4 SO4 . O 4 HOH A 1 601 107 HOH HOH . O 4 HOH A 2 602 17 HOH HOH . O 4 HOH A 3 603 18 HOH HOH . O 4 HOH A 4 604 51 HOH HOH . O 4 HOH A 5 605 65 HOH HOH . O 4 HOH A 6 606 71 HOH HOH . O 4 HOH A 7 607 134 HOH HOH . O 4 HOH A 8 608 128 HOH HOH . O 4 HOH A 9 609 16 HOH HOH . O 4 HOH A 10 610 9 HOH HOH . O 4 HOH A 11 611 119 HOH HOH . O 4 HOH A 12 612 91 HOH HOH . O 4 HOH A 13 613 126 HOH HOH . O 4 HOH A 14 614 35 HOH HOH . O 4 HOH A 15 615 14 HOH HOH . O 4 HOH A 16 616 5 HOH HOH . O 4 HOH A 17 617 26 HOH HOH . O 4 HOH A 18 618 59 HOH HOH . O 4 HOH A 19 619 45 HOH HOH . O 4 HOH A 20 620 36 HOH HOH . O 4 HOH A 21 621 24 HOH HOH . O 4 HOH A 22 622 7 HOH HOH . O 4 HOH A 23 623 8 HOH HOH . O 4 HOH A 24 624 15 HOH HOH . O 4 HOH A 25 625 13 HOH HOH . O 4 HOH A 26 626 19 HOH HOH . O 4 HOH A 27 627 31 HOH HOH . O 4 HOH A 28 628 32 HOH HOH . O 4 HOH A 29 629 52 HOH HOH . O 4 HOH A 30 630 20 HOH HOH . O 4 HOH A 31 631 3 HOH HOH . O 4 HOH A 32 632 70 HOH HOH . O 4 HOH A 33 633 44 HOH HOH . O 4 HOH A 34 634 50 HOH HOH . O 4 HOH A 35 635 56 HOH HOH . O 4 HOH A 36 636 12 HOH HOH . O 4 HOH A 37 637 68 HOH HOH . O 4 HOH A 38 638 28 HOH HOH . O 4 HOH A 39 639 1 HOH HOH . O 4 HOH A 40 640 21 HOH HOH . O 4 HOH A 41 641 41 HOH HOH . O 4 HOH A 42 642 62 HOH HOH . O 4 HOH A 43 643 40 HOH HOH . O 4 HOH A 44 644 4 HOH HOH . O 4 HOH A 45 645 6 HOH HOH . O 4 HOH A 46 646 96 HOH HOH . O 4 HOH A 47 647 33 HOH HOH . O 4 HOH A 48 648 22 HOH HOH . O 4 HOH A 49 649 57 HOH HOH . O 4 HOH A 50 650 46 HOH HOH . O 4 HOH A 51 651 54 HOH HOH . O 4 HOH A 52 652 100 HOH HOH . O 4 HOH A 53 653 61 HOH HOH . O 4 HOH A 54 654 87 HOH HOH . O 4 HOH A 55 655 113 HOH HOH . O 4 HOH A 56 656 55 HOH HOH . O 4 HOH A 57 657 79 HOH HOH . O 4 HOH A 58 658 95 HOH HOH . O 4 HOH A 59 659 23 HOH HOH . O 4 HOH A 60 660 66 HOH HOH . O 4 HOH A 61 661 77 HOH HOH . O 4 HOH A 62 662 39 HOH HOH . O 4 HOH A 63 663 98 HOH HOH . O 4 HOH A 64 664 53 HOH HOH . O 4 HOH A 65 665 123 HOH HOH . O 4 HOH A 66 666 102 HOH HOH . O 4 HOH A 67 667 114 HOH HOH . O 4 HOH A 68 668 82 HOH HOH . O 4 HOH A 69 669 135 HOH HOH . O 4 HOH A 70 670 103 HOH HOH . O 4 HOH A 71 671 94 HOH HOH . O 4 HOH A 72 672 115 HOH HOH . O 4 HOH A 73 673 116 HOH HOH . O 4 HOH A 74 674 122 HOH HOH . O 4 HOH A 75 675 118 HOH HOH . O 4 HOH A 76 676 76 HOH HOH . O 4 HOH A 77 677 83 HOH HOH . O 4 HOH A 78 678 110 HOH HOH . O 4 HOH A 79 679 78 HOH HOH . O 4 HOH A 80 680 97 HOH HOH . O 4 HOH A 81 681 130 HOH HOH . P 4 HOH B 1 601 58 HOH HOH . P 4 HOH B 2 602 67 HOH HOH . P 4 HOH B 3 603 63 HOH HOH . P 4 HOH B 4 604 30 HOH HOH . P 4 HOH B 5 605 11 HOH HOH . P 4 HOH B 6 606 125 HOH HOH . P 4 HOH B 7 607 106 HOH HOH . P 4 HOH B 8 608 38 HOH HOH . P 4 HOH B 9 609 136 HOH HOH . P 4 HOH B 10 610 129 HOH HOH . P 4 HOH B 11 611 69 HOH HOH . P 4 HOH B 12 612 10 HOH HOH . P 4 HOH B 13 613 34 HOH HOH . P 4 HOH B 14 614 108 HOH HOH . P 4 HOH B 15 615 48 HOH HOH . P 4 HOH B 16 616 49 HOH HOH . P 4 HOH B 17 617 47 HOH HOH . P 4 HOH B 18 618 27 HOH HOH . P 4 HOH B 19 619 64 HOH HOH . P 4 HOH B 20 620 75 HOH HOH . P 4 HOH B 21 621 37 HOH HOH . P 4 HOH B 22 622 101 HOH HOH . P 4 HOH B 23 623 29 HOH HOH . P 4 HOH B 24 624 80 HOH HOH . P 4 HOH B 25 625 74 HOH HOH . P 4 HOH B 26 626 111 HOH HOH . P 4 HOH B 27 627 73 HOH HOH . P 4 HOH B 28 628 127 HOH HOH . P 4 HOH B 29 629 137 HOH HOH . P 4 HOH B 30 630 117 HOH HOH . P 4 HOH B 31 631 86 HOH HOH . P 4 HOH B 32 632 42 HOH HOH . P 4 HOH B 33 633 81 HOH HOH . P 4 HOH B 34 634 124 HOH HOH . P 4 HOH B 35 635 43 HOH HOH . P 4 HOH B 36 636 85 HOH HOH . P 4 HOH B 37 637 131 HOH HOH . P 4 HOH B 38 638 109 HOH HOH . P 4 HOH B 39 639 120 HOH HOH . P 4 HOH B 40 640 99 HOH HOH . P 4 HOH B 41 641 84 HOH HOH . P 4 HOH B 42 642 104 HOH HOH . P 4 HOH B 43 643 72 HOH HOH . P 4 HOH B 44 644 90 HOH HOH . P 4 HOH B 45 645 92 HOH HOH . P 4 HOH B 46 646 105 HOH HOH . P 4 HOH B 47 647 132 HOH HOH . P 4 HOH B 48 648 133 HOH HOH . P 4 HOH B 49 649 60 HOH HOH . P 4 HOH B 50 650 121 HOH HOH . P 4 HOH B 51 651 88 HOH HOH . P 4 HOH B 52 652 89 HOH HOH . P 4 HOH B 53 653 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . K 2 -6.069 -10.402 -50.804 1 104.58 ? S DMS 504 B 1 HETATM 2 O O DMS . . . K 2 -5.196 -9.35 -51.437 1 55.71 ? O DMS 504 B 1 HETATM 3 C C1 DMS . . . K 2 -7.083 -11.219 -52.071 1 99.72 ? C1 DMS 504 B 1 HETATM 4 C C2 DMS . . . K 2 -7.396 -9.711 -49.756 1 52.42 ? C2 DMS 504 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #