data_9I6B
#
_model_server_result.job_id            RWPF7tqB73nFy1O4SXQMpg 
_model_server_result.datetime_utc      '2025-09-09 01:02:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9i6b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":401}' 
#
_entry.id    9I6B 
#
_exptl.entry_id    9I6B 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              790.145 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9I6B 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9I6B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 K N N 
? 6 L N N 
? 6 N N N 
? 6 O N N 
? 6 S N N 
? 6 U N N 
? 6 V N N 
? 6 X N N 
? 6 Z N N 
? 6 CA N N 
#
_chem_comp.formula           'C44 H88 N O8 P' 
_chem_comp.formula_weight    790.145 
_chem_comp.id                PC1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-SN-PHOSPHATIDYLCHOLINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P PC1 sing 329 n n 
P O14 PC1 doub 330 n n 
P O13 PC1 sing 331 n n 
P O11 PC1 sing 332 n n 
O13 C11 PC1 sing 333 n n 
C11 C12 PC1 sing 334 n n 
C11 H111 PC1 sing 335 n n 
C11 H112 PC1 sing 336 n n 
C12 N PC1 sing 337 n n 
C12 H121 PC1 sing 338 n n 
C12 H122 PC1 sing 339 n n 
N C13 PC1 sing 340 n n 
N C14 PC1 sing 341 n n 
N C15 PC1 sing 342 n n 
C13 H131 PC1 sing 343 n n 
C13 H132 PC1 sing 344 n n 
C13 H133 PC1 sing 345 n n 
C14 H141 PC1 sing 346 n n 
C14 H142 PC1 sing 347 n n 
C14 H143 PC1 sing 348 n n 
C15 H151 PC1 sing 349 n n 
C15 H152 PC1 sing 350 n n 
C15 H153 PC1 sing 351 n n 
O11 C1 PC1 sing 352 n n 
C1 C2 PC1 sing 353 n n 
C1 H11 PC1 sing 354 n n 
C1 H12 PC1 sing 355 n n 
C2 O21 PC1 sing 356 n n 
C2 C3 PC1 sing 357 n n 
C2 H2 PC1 sing 358 n n 
O21 C21 PC1 sing 359 n n 
C21 O22 PC1 doub 360 n n 
C21 C22 PC1 sing 361 n n 
C22 C23 PC1 sing 362 n n 
C22 H221 PC1 sing 363 n n 
C22 H222 PC1 sing 364 n n 
C23 C24 PC1 sing 365 n n 
C23 H231 PC1 sing 366 n n 
C23 H232 PC1 sing 367 n n 
C24 C25 PC1 sing 368 n n 
C24 H241 PC1 sing 369 n n 
C24 H242 PC1 sing 370 n n 
C25 C26 PC1 sing 371 n n 
C25 H251 PC1 sing 372 n n 
C25 H252 PC1 sing 373 n n 
C26 C27 PC1 sing 374 n n 
C26 H261 PC1 sing 375 n n 
C26 H262 PC1 sing 376 n n 
C27 C28 PC1 sing 377 n n 
C27 H271 PC1 sing 378 n n 
C27 H272 PC1 sing 379 n n 
C28 C29 PC1 sing 380 n n 
C28 H281 PC1 sing 381 n n 
C28 H282 PC1 sing 382 n n 
C29 C2A PC1 sing 383 n n 
C29 H291 PC1 sing 384 n n 
C29 H292 PC1 sing 385 n n 
C2A C2B PC1 sing 386 n n 
C2A H2A1 PC1 sing 387 n n 
C2A H2A2 PC1 sing 388 n n 
C2B C2C PC1 sing 389 n n 
C2B H2B1 PC1 sing 390 n n 
C2B H2B2 PC1 sing 391 n n 
C2C C2D PC1 sing 392 n n 
C2C H2C1 PC1 sing 393 n n 
C2C H2C2 PC1 sing 394 n n 
C2D C2E PC1 sing 395 n n 
C2D H2D1 PC1 sing 396 n n 
C2D H2D2 PC1 sing 397 n n 
C2E C2F PC1 sing 398 n n 
C2E H2E1 PC1 sing 399 n n 
C2E H2E2 PC1 sing 400 n n 
C2F C2G PC1 sing 401 n n 
C2F H2F1 PC1 sing 402 n n 
C2F H2F2 PC1 sing 403 n n 
C2G C2H PC1 sing 404 n n 
C2G H2G1 PC1 sing 405 n n 
C2G H2G2 PC1 sing 406 n n 
C2H C2I PC1 sing 407 n n 
C2H H2H1 PC1 sing 408 n n 
C2H H2H2 PC1 sing 409 n n 
C2I H2I1 PC1 sing 410 n n 
C2I H2I2 PC1 sing 411 n n 
C2I H2I3 PC1 sing 412 n n 
C3 O31 PC1 sing 413 n n 
C3 H31 PC1 sing 414 n n 
C3 H32 PC1 sing 415 n n 
O31 C31 PC1 sing 416 n n 
C31 O32 PC1 doub 417 n n 
C31 C32 PC1 sing 418 n n 
C32 C33 PC1 sing 419 n n 
C32 H321 PC1 sing 420 n n 
C32 H322 PC1 sing 421 n n 
C33 C34 PC1 sing 422 n n 
C33 H331 PC1 sing 423 n n 
C33 H332 PC1 sing 424 n n 
C34 C35 PC1 sing 425 n n 
C34 H341 PC1 sing 426 n n 
C34 H342 PC1 sing 427 n n 
C35 C36 PC1 sing 428 n n 
C35 H351 PC1 sing 429 n n 
C35 H352 PC1 sing 430 n n 
C36 C37 PC1 sing 431 n n 
C36 H361 PC1 sing 432 n n 
C36 H362 PC1 sing 433 n n 
C37 C38 PC1 sing 434 n n 
C37 H371 PC1 sing 435 n n 
C37 H372 PC1 sing 436 n n 
C38 C39 PC1 sing 437 n n 
C38 H381 PC1 sing 438 n n 
C38 H382 PC1 sing 439 n n 
C39 C3A PC1 sing 440 n n 
C39 H391 PC1 sing 441 n n 
C39 H392 PC1 sing 442 n n 
C3A C3B PC1 sing 443 n n 
C3A H3A1 PC1 sing 444 n n 
C3A H3A2 PC1 sing 445 n n 
C3B C3C PC1 sing 446 n n 
C3B H3B1 PC1 sing 447 n n 
C3B H3B2 PC1 sing 448 n n 
C3C C3D PC1 sing 449 n n 
C3C H3C1 PC1 sing 450 n n 
C3C H3C2 PC1 sing 451 n n 
C3D C3E PC1 sing 452 n n 
C3D H3D1 PC1 sing 453 n n 
C3D H3D2 PC1 sing 454 n n 
C3E C3F PC1 sing 455 n n 
C3E H3E1 PC1 sing 456 n n 
C3E H3E2 PC1 sing 457 n n 
C3F C3G PC1 sing 458 n n 
C3F H3F1 PC1 sing 459 n n 
C3F H3F2 PC1 sing 460 n n 
C3G C3H PC1 sing 461 n n 
C3G H3G1 PC1 sing 462 n n 
C3G H3G2 PC1 sing 463 n n 
C3H C3I PC1 sing 464 n n 
C3H H3H1 PC1 sing 465 n n 
C3H H3H2 PC1 sing 466 n n 
C3I H3I1 PC1 sing 467 n n 
C3I H3I2 PC1 sing 468 n n 
C3I H3I3 PC1 sing 469 n n 
#
_atom_sites.entry_id                     9I6B 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 PC1 C 1 201 406 PC1 PC1 . 
L 6 PC1 C 1 202 403 PC1 PC1 . 
M 7 DU0 G 1 101 404 DU0 DU0 . 
N 6 PC1 I 1 401 401 PC1 PC1 . 
O 6 PC1 A 1 401 402 PC1 PC1 . 
P 7 DU0 A 1 402 405 DU0 DU0 . 
Q 7 DU0 A 1 403 407 DU0 DU0 . 
R 8 PLC A 1 404 408 PLC PLC . 
S 6 PC1 A 1 405 410 PC1 PC1 . 
T 7 DU0 A 1 406 409 DU0 DU0 . 
U 6 PC1 D 1 201 403 PC1 PC1 . 
V 6 PC1 D 1 202 406 PC1 PC1 . 
W 7 DU0 H 1 101 404 DU0 DU0 . 
X 6 PC1 J 1 401 401 PC1 PC1 . 
Y 7 DU0 B 1 401 409 DU0 DU0 . 
Z 6 PC1 B 1 402 402 PC1 PC1 . 
AA 7 DU0 B 1 403 405 DU0 DU0 . 
BA 7 DU0 B 1 404 407 DU0 DU0 . 
CA 6 PC1 B 1 405 410 PC1 PC1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 PC1 . . . N 6 163.708 186.244 149.33 1 66.36 ? O12 PC1 401 I 1 
HETATM 2 P P PC1 . . . N 6 163.637 187.516 150.108 1 85.04 ? P PC1 401 I 1 
HETATM 3 O O14 PC1 . . . N 6 164.527 188.685 149.852 1 64.73 ? O14 PC1 401 I 1 
HETATM 4 O O13 PC1 . . . N 6 162.117 188.138 149.974 1 68.33 ? O13 PC1 401 I 1 
HETATM 5 C C11 PC1 . . . N 6 161.944 189.357 149.293 1 65.78 ? C11 PC1 401 I 1 
HETATM 6 C C12 PC1 . . . N 6 160.84 190.093 150.04 1 66.84 ? C12 PC1 401 I 1 
HETATM 7 N N PC1 . . . N 6 161.223 191.371 150.721 1 68 ? N PC1 401 I 1 
HETATM 8 C C13 PC1 . . . N 6 160.24 191.702 151.783 1 62.42 ? C13 PC1 401 I 1 
HETATM 9 C C14 PC1 . . . N 6 162.571 191.213 151.334 1 61.84 ? C14 PC1 401 I 1 
HETATM 10 C C15 PC1 . . . N 6 161.273 192.489 149.739 1 61.9 ? C15 PC1 401 I 1 
HETATM 11 O O11 PC1 . . . N 6 163.733 187.059 151.686 1 67.42 ? O11 PC1 401 I 1 
HETATM 12 C C1 PC1 . . . N 6 162.578 186.893 152.478 1 60.43 ? C1 PC1 401 I 1 
HETATM 13 C C2 PC1 . . . N 6 162.583 187.903 153.606 1 60.82 ? C2 PC1 401 I 1 
HETATM 14 O O21 PC1 . . . N 6 162.732 187.229 154.857 1 65.93 ? O21 PC1 401 I 1 
HETATM 15 C C21 PC1 . . . N 6 163.856 187.38 155.549 1 64.25 ? C21 PC1 401 I 1 
HETATM 16 O O22 PC1 . . . N 6 164.528 188.376 155.524 1 62.68 ? O22 PC1 401 I 1 
HETATM 17 C C22 PC1 . . . N 6 164.186 186.15 156.338 1 62.34 ? C22 PC1 401 I 1 
HETATM 18 C C23 PC1 . . . N 6 164.085 186.323 157.84 1 60.99 ? C23 PC1 401 I 1 
HETATM 19 C C24 PC1 . . . N 6 162.772 186.959 158.257 1 58.96 ? C24 PC1 401 I 1 
HETATM 20 C C25 PC1 . . . N 6 162.511 186.818 159.746 1 58.95 ? C25 PC1 401 I 1 
HETATM 21 C C26 PC1 . . . N 6 163.315 185.692 160.382 1 60.26 ? C26 PC1 401 I 1 
HETATM 22 C C27 PC1 . . . N 6 163.047 185.516 161.867 1 60.83 ? C27 PC1 401 I 1 
HETATM 23 C C28 PC1 . . . N 6 162.687 186.832 162.538 1 62.36 ? C28 PC1 401 I 1 
HETATM 24 C C29 PC1 . . . N 6 163.883 187.567 163.115 1 59.14 ? C29 PC1 401 I 1 
HETATM 25 C C2A PC1 . . . N 6 164.912 186.648 163.749 1 59.55 ? C2A PC1 401 I 1 
HETATM 26 C C2B PC1 . . . N 6 164.834 186.604 165.266 1 57.89 ? C2B PC1 401 I 1 
HETATM 27 C C2C PC1 . . . N 6 164.28 187.884 165.873 1 59.08 ? C2C PC1 401 I 1 
HETATM 28 C C2D PC1 . . . N 6 164.808 188.17 167.271 1 57.85 ? C2D PC1 401 I 1 
HETATM 29 C C2E PC1 . . . N 6 165.701 187.066 167.82 1 62.22 ? C2E PC1 401 I 1 
HETATM 30 C C2F PC1 . . . N 6 167.051 187.578 168.305 1 62.05 ? C2F PC1 401 I 1 
HETATM 31 C C3 PC1 . . . N 6 161.293 188.692 153.672 1 59.15 ? C3 PC1 401 I 1 
HETATM 32 O O31 PC1 . . . N 6 160.985 188.946 155.036 1 65.49 ? O31 PC1 401 I 1 
HETATM 33 C C31 PC1 . . . N 6 161.252 190.154 155.514 1 65.2 ? C31 PC1 401 I 1 
HETATM 34 O O32 PC1 . . . N 6 161.444 191.11 154.81 1 62.14 ? O32 PC1 401 I 1 
HETATM 35 C C32 PC1 . . . N 6 161.281 190.169 157.013 1 61.64 ? C32 PC1 401 I 1 
HETATM 36 C C33 PC1 . . . N 6 160.545 191.357 157.597 1 58.23 ? C33 PC1 401 I 1 
HETATM 37 C C34 PC1 . . . N 6 161.292 191.928 158.789 1 59.66 ? C34 PC1 401 I 1 
HETATM 38 C C35 PC1 . . . N 6 160.978 191.251 160.112 1 61.07 ? C35 PC1 401 I 1 
HETATM 39 C C36 PC1 . . . N 6 160.237 192.209 161.035 1 59.93 ? C36 PC1 401 I 1 
HETATM 40 C C37 PC1 . . . N 6 160.694 192.164 162.484 1 60.84 ? C37 PC1 401 I 1 
HETATM 41 C C38 PC1 . . . N 6 161.391 190.865 162.856 1 60.34 ? C38 PC1 401 I 1 
HETATM 42 C C39 PC1 . . . N 6 161.096 190.427 164.28 1 57.38 ? C39 PC1 401 I 1 
HETATM 43 C C3A PC1 . . . N 6 161.152 191.575 165.274 1 57.23 ? C3A PC1 401 I 1 
HETATM 44 C C3B PC1 . . . N 6 162.4 191.535 166.142 1 58.09 ? C3B PC1 401 I 1 
HETATM 45 C C3C PC1 . . . N 6 163.264 192.788 166.082 1 63.67 ? C3C PC1 401 I 1 
HETATM 46 C C3D PC1 . . . N 6 162.59 194.003 165.462 1 62.97 ? C3D PC1 401 I 1 
HETATM 47 C C3E PC1 . . . N 6 163.179 195.322 165.948 1 61.61 ? C3E PC1 401 I 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#