data_9I7H # _model_server_result.job_id jMAcxGe7k7TB-vVDK3uW3w _model_server_result.datetime_utc '2025-08-14 15:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9i7h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 9I7H # _exptl.entry_id 9I7H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.26 _cell.angle_gamma 90 _cell.entry_id 9I7H _cell.length_a 42.109 _cell.length_b 70.989 _cell.length_c 44.458 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9I7H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 9I7H _atom_sites.fract_transf_matrix[1][1] 0.023748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012765 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 101 101 MPD MPD . D 2 MPD B 1 101 101 MPD MPD . E 3 HOH A 1 201 77 HOH HOH . E 3 HOH A 2 202 13 HOH HOH . E 3 HOH A 3 203 17 HOH HOH . E 3 HOH A 4 204 59 HOH HOH . E 3 HOH A 5 205 38 HOH HOH . E 3 HOH A 6 206 78 HOH HOH . E 3 HOH A 7 207 34 HOH HOH . E 3 HOH A 8 208 23 HOH HOH . E 3 HOH A 9 209 68 HOH HOH . E 3 HOH A 10 210 80 HOH HOH . E 3 HOH A 11 211 70 HOH HOH . E 3 HOH A 12 212 3 HOH HOH . E 3 HOH A 13 213 11 HOH HOH . E 3 HOH A 14 214 85 HOH HOH . E 3 HOH A 15 215 43 HOH HOH . E 3 HOH A 16 216 10 HOH HOH . E 3 HOH A 17 217 42 HOH HOH . E 3 HOH A 18 218 7 HOH HOH . E 3 HOH A 19 219 2 HOH HOH . E 3 HOH A 20 220 5 HOH HOH . E 3 HOH A 21 221 76 HOH HOH . E 3 HOH A 22 222 16 HOH HOH . E 3 HOH A 23 223 30 HOH HOH . E 3 HOH A 24 224 62 HOH HOH . E 3 HOH A 25 225 53 HOH HOH . E 3 HOH A 26 226 39 HOH HOH . E 3 HOH A 27 227 24 HOH HOH . E 3 HOH A 28 228 66 HOH HOH . E 3 HOH A 29 229 72 HOH HOH . E 3 HOH A 30 230 45 HOH HOH . E 3 HOH A 31 231 92 HOH HOH . E 3 HOH A 32 232 50 HOH HOH . E 3 HOH A 33 233 60 HOH HOH . E 3 HOH A 34 234 67 HOH HOH . E 3 HOH A 35 235 47 HOH HOH . E 3 HOH A 36 236 84 HOH HOH . E 3 HOH A 37 237 33 HOH HOH . E 3 HOH A 38 238 56 HOH HOH . E 3 HOH A 39 239 71 HOH HOH . F 3 HOH B 1 201 61 HOH HOH . F 3 HOH B 2 202 28 HOH HOH . F 3 HOH B 3 203 20 HOH HOH . F 3 HOH B 4 204 14 HOH HOH . F 3 HOH B 5 205 15 HOH HOH . F 3 HOH B 6 206 55 HOH HOH . F 3 HOH B 7 207 73 HOH HOH . F 3 HOH B 8 208 79 HOH HOH . F 3 HOH B 9 209 9 HOH HOH . F 3 HOH B 10 210 74 HOH HOH . F 3 HOH B 11 211 25 HOH HOH . F 3 HOH B 12 212 37 HOH HOH . F 3 HOH B 13 213 40 HOH HOH . F 3 HOH B 14 214 4 HOH HOH . F 3 HOH B 15 215 6 HOH HOH . F 3 HOH B 16 216 1 HOH HOH . F 3 HOH B 17 217 35 HOH HOH . F 3 HOH B 18 218 49 HOH HOH . F 3 HOH B 19 219 87 HOH HOH . F 3 HOH B 20 220 46 HOH HOH . F 3 HOH B 21 221 91 HOH HOH . F 3 HOH B 22 222 36 HOH HOH . F 3 HOH B 23 223 81 HOH HOH . F 3 HOH B 24 224 89 HOH HOH . F 3 HOH B 25 225 32 HOH HOH . F 3 HOH B 26 226 41 HOH HOH . F 3 HOH B 27 227 21 HOH HOH . F 3 HOH B 28 228 52 HOH HOH . F 3 HOH B 29 229 44 HOH HOH . F 3 HOH B 30 230 18 HOH HOH . F 3 HOH B 31 231 58 HOH HOH . F 3 HOH B 32 232 31 HOH HOH . F 3 HOH B 33 233 54 HOH HOH . F 3 HOH B 34 234 51 HOH HOH . F 3 HOH B 35 235 63 HOH HOH . F 3 HOH B 36 236 22 HOH HOH . F 3 HOH B 37 237 48 HOH HOH . F 3 HOH B 38 238 75 HOH HOH . F 3 HOH B 39 239 29 HOH HOH . F 3 HOH B 40 240 86 HOH HOH . F 3 HOH B 41 241 88 HOH HOH . F 3 HOH B 42 242 83 HOH HOH . F 3 HOH B 43 243 69 HOH HOH . F 3 HOH B 44 244 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 2 -21.01 29.9 -7.744 1 24.01 ? C1 MPD 101 A 1 HETATM 2 C C2 MPD . . . C 2 -20.609 31.368 -7.831 1 23.25 ? C2 MPD 101 A 1 HETATM 3 O O2 MPD . . . C 2 -21.716 31.977 -8.498 1 25.09 ? O2 MPD 101 A 1 HETATM 4 C CM MPD . . . C 2 -19.326 31.583 -8.642 1 25.06 ? CM MPD 101 A 1 HETATM 5 C C3 MPD . . . C 2 -20.413 31.923 -6.411 1 24.58 ? C3 MPD 101 A 1 HETATM 6 C C4 MPD . . . C 2 -21.506 32.713 -5.737 1 23.62 ? C4 MPD 101 A 1 HETATM 7 O O4 MPD . . . C 2 -22.819 32.478 -6.229 1 27.59 ? O4 MPD 101 A 1 HETATM 8 C C5 MPD . . . C 2 -21.378 32.985 -4.26 1 22.56 ? C5 MPD 101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #