data_9ICD # _model_server_result.job_id aXZdXEoa4vmKDsTSTxVZjQ _model_server_result.datetime_utc '2024-10-19 03:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9icd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":417}' # _entry.id 9ICD # _exptl.entry_id 9ICD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ICD _cell.length_a 105.1 _cell.length_b 105.1 _cell.length_c 150.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ICD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 9ICD _atom_sites.fract_transf_matrix[1][1] 0.009515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009515 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 417 1 NAP NAP . C 3 HOH A 1 418 2 HOH HOH . C 3 HOH A 2 419 3 HOH HOH . C 3 HOH A 3 420 4 HOH HOH . C 3 HOH A 4 421 5 HOH HOH . C 3 HOH A 5 422 6 HOH HOH . C 3 HOH A 6 423 7 HOH HOH . C 3 HOH A 7 424 8 HOH HOH . C 3 HOH A 8 425 9 HOH HOH . C 3 HOH A 9 426 10 HOH HOH . C 3 HOH A 10 427 11 HOH HOH . C 3 HOH A 11 428 12 HOH HOH . C 3 HOH A 12 429 13 HOH HOH . C 3 HOH A 13 430 14 HOH HOH . C 3 HOH A 14 431 15 HOH HOH . C 3 HOH A 15 432 16 HOH HOH . C 3 HOH A 16 433 17 HOH HOH . C 3 HOH A 17 434 18 HOH HOH . C 3 HOH A 18 435 19 HOH HOH . C 3 HOH A 19 436 20 HOH HOH . C 3 HOH A 20 437 21 HOH HOH . C 3 HOH A 21 438 22 HOH HOH . C 3 HOH A 22 439 23 HOH HOH . C 3 HOH A 23 440 24 HOH HOH . C 3 HOH A 24 441 25 HOH HOH . C 3 HOH A 25 442 26 HOH HOH . C 3 HOH A 26 443 27 HOH HOH . C 3 HOH A 27 444 28 HOH HOH . C 3 HOH A 28 445 29 HOH HOH . C 3 HOH A 29 446 30 HOH HOH . C 3 HOH A 30 447 31 HOH HOH . C 3 HOH A 31 448 32 HOH HOH . C 3 HOH A 32 449 33 HOH HOH . C 3 HOH A 33 450 34 HOH HOH . C 3 HOH A 34 451 35 HOH HOH . C 3 HOH A 35 452 36 HOH HOH . C 3 HOH A 36 453 37 HOH HOH . C 3 HOH A 37 454 38 HOH HOH . C 3 HOH A 38 455 39 HOH HOH . C 3 HOH A 39 456 40 HOH HOH . C 3 HOH A 40 457 41 HOH HOH . C 3 HOH A 41 458 42 HOH HOH . C 3 HOH A 42 459 43 HOH HOH . C 3 HOH A 43 460 44 HOH HOH . C 3 HOH A 44 461 45 HOH HOH . C 3 HOH A 45 462 46 HOH HOH . C 3 HOH A 46 463 47 HOH HOH . C 3 HOH A 47 464 48 HOH HOH . C 3 HOH A 48 465 49 HOH HOH . C 3 HOH A 49 466 50 HOH HOH . C 3 HOH A 50 467 51 HOH HOH . C 3 HOH A 51 468 52 HOH HOH . C 3 HOH A 52 469 53 HOH HOH . C 3 HOH A 53 470 54 HOH HOH . C 3 HOH A 54 471 55 HOH HOH . C 3 HOH A 55 472 56 HOH HOH . C 3 HOH A 56 473 57 HOH HOH . C 3 HOH A 57 474 58 HOH HOH . C 3 HOH A 58 475 59 HOH HOH . C 3 HOH A 59 476 60 HOH HOH . C 3 HOH A 60 477 61 HOH HOH . C 3 HOH A 61 478 62 HOH HOH . C 3 HOH A 62 479 63 HOH HOH . C 3 HOH A 63 480 64 HOH HOH . C 3 HOH A 64 481 65 HOH HOH . C 3 HOH A 65 482 66 HOH HOH . C 3 HOH A 66 483 67 HOH HOH . C 3 HOH A 67 484 68 HOH HOH . C 3 HOH A 68 485 69 HOH HOH . C 3 HOH A 69 486 70 HOH HOH . C 3 HOH A 70 487 71 HOH HOH . C 3 HOH A 71 488 72 HOH HOH . C 3 HOH A 72 489 73 HOH HOH . C 3 HOH A 73 490 74 HOH HOH . C 3 HOH A 74 491 75 HOH HOH . C 3 HOH A 75 492 76 HOH HOH . C 3 HOH A 76 493 77 HOH HOH . C 3 HOH A 77 494 78 HOH HOH . C 3 HOH A 78 495 79 HOH HOH . C 3 HOH A 79 496 80 HOH HOH . C 3 HOH A 80 497 81 HOH HOH . C 3 HOH A 81 498 82 HOH HOH . C 3 HOH A 82 499 83 HOH HOH . C 3 HOH A 83 500 84 HOH HOH . C 3 HOH A 84 501 85 HOH HOH . C 3 HOH A 85 502 86 HOH HOH . C 3 HOH A 86 503 87 HOH HOH . C 3 HOH A 87 504 88 HOH HOH . C 3 HOH A 88 505 89 HOH HOH . C 3 HOH A 89 506 90 HOH HOH . C 3 HOH A 90 507 91 HOH HOH . C 3 HOH A 91 508 92 HOH HOH . C 3 HOH A 92 509 93 HOH HOH . C 3 HOH A 93 510 94 HOH HOH . C 3 HOH A 94 511 95 HOH HOH . C 3 HOH A 95 512 96 HOH HOH . C 3 HOH A 96 513 97 HOH HOH . C 3 HOH A 97 514 98 HOH HOH . C 3 HOH A 98 515 99 HOH HOH . C 3 HOH A 99 516 100 HOH HOH . C 3 HOH A 100 517 101 HOH HOH . C 3 HOH A 101 518 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 92.263 68.007 -4.808 1 73.89 ? PA NAP 417 A 1 HETATM 2 O O1A NAP . . . B 2 90.999 67.599 -4.072 1 68.84 ? O1A NAP 417 A 1 HETATM 3 O O2A NAP . . . B 2 92.143 68.357 -6.268 1 72.61 ? O2A NAP 417 A 1 HETATM 4 O O5B NAP . . . B 2 92.956 69.365 -4.063 1 65.83 ? O5B NAP 417 A 1 HETATM 5 C C5B NAP . . . B 2 92.984 70.592 -4.876 1 58.77 ? C5B NAP 417 A 1 HETATM 6 C C4B NAP . . . B 2 94.265 71.482 -4.961 1 52.28 ? C4B NAP 417 A 1 HETATM 7 O O4B NAP . . . B 2 94.638 72.244 -3.772 1 49.56 ? O4B NAP 417 A 1 HETATM 8 C C3B NAP . . . B 2 95.556 70.745 -5.314 1 50.65 ? C3B NAP 417 A 1 HETATM 9 O O3B NAP . . . B 2 95.606 70.377 -6.687 1 51.41 ? O3B NAP 417 A 1 HETATM 10 C C2B NAP . . . B 2 96.644 71.739 -4.94 1 50.09 ? C2B NAP 417 A 1 HETATM 11 O O2B NAP . . . B 2 96.502 73.009 -5.577 1 54.65 ? O2B NAP 417 A 1 HETATM 12 C C1B NAP . . . B 2 96.07 72.122 -3.605 1 49.14 ? C1B NAP 417 A 1 HETATM 13 N N9A NAP . . . B 2 96.441 71.208 -2.48 1 47.47 ? N9A NAP 417 A 1 HETATM 14 C C8A NAP . . . B 2 95.806 70.048 -2.003 1 44.13 ? C8A NAP 417 A 1 HETATM 15 N N7A NAP . . . B 2 96.331 69.611 -0.885 1 44.02 ? N7A NAP 417 A 1 HETATM 16 C C5A NAP . . . B 2 97.358 70.515 -0.598 1 42.75 ? C5A NAP 417 A 1 HETATM 17 C C6A NAP . . . B 2 98.285 70.597 0.444 1 37.46 ? C6A NAP 417 A 1 HETATM 18 N N6A NAP . . . B 2 98.333 69.74 1.429 1 31.24 ? N6A NAP 417 A 1 HETATM 19 N N1A NAP . . . B 2 99.19 71.575 0.39 1 41.96 ? N1A NAP 417 A 1 HETATM 20 C C2A NAP . . . B 2 99.186 72.455 -0.62 1 43.68 ? C2A NAP 417 A 1 HETATM 21 N N3A NAP . . . B 2 98.349 72.496 -1.664 1 44.46 ? N3A NAP 417 A 1 HETATM 22 C C4A NAP . . . B 2 97.441 71.487 -1.577 1 45.07 ? C4A NAP 417 A 1 HETATM 23 O O3 NAP . . . B 2 93.458 66.858 -4.707 1 66.69 ? O3 NAP 417 A 1 HETATM 24 P P2B NAP . . . B 2 97.524 73.623 -6.708 1 60.28 ? P2B NAP 417 A 1 HETATM 25 O O1X NAP . . . B 2 97.019 74.971 -7.102 1 57.13 ? O1X NAP 417 A 1 HETATM 26 O O2X NAP . . . B 2 97.676 72.531 -7.717 1 57.85 ? O2X NAP 417 A 1 HETATM 27 O O3X NAP . . . B 2 98.976 73.917 -6.042 1 56.53 ? O3X NAP 417 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #