data_9ICG # _model_server_result.job_id Z5TpAcWu-V57aVZaIoPiVg _model_server_result.datetime_utc '2024-10-18 16:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9icg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":338}' # _entry.id 9ICG # _exptl.entry_id 9ICG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ICG _cell.length_a 179.89 _cell.length_b 57.6 _cell.length_c 48.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ICG _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DT 6 P DT 6 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc2 C ND1 HIS 51 A HIS 51 1_555 H ZN ZN . A ZN 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? metalc ? metalc3 C O LEU 62 A LEU 62 3_547 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc4 C O THR 101 A THR 101 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc5 C O VAL 103 A VAL 103 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 C O ILE 106 A ILE 106 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc7 C ND1 HIS 134 A HIS 134 1_565 H ZN ZN . A ZN 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc8 C OD1 ASP 190 A ASP 190 1_555 D ZN ZN . A ZN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 I O1A DCP . A DCP 338 1_555 D ZN ZN . A ZN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.846 ? metalc ? metalc10 I O1G DCP . A DCP 338 1_555 D ZN ZN . A ZN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc11 F NA NA . A NA 341 1_555 L O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc12 H ZN ZN . A ZN 343 1_555 L O HOH . A HOH 515 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc13 H ZN ZN . A ZN 343 1_555 L O HOH . A HOH 516 1_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? hydrog 'DA-DT PAIR' hydrog1 A N1 DA 2 T DA 2 1_555 B N3 DT 6 P DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N3 DT 3 T DT 3 1_555 B N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O4 DT 3 T DT 3 1_555 B N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 4 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 4 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 5 T DA 5 1_555 B N3 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 5 T DA 5 1_555 B O4 DT 3 P DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 6 T DG 6 1_555 B N3 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 6 T DG 6 1_555 B O2 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 6 T DG 6 1_555 B N4 DC 2 P DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DA 7 T DA 7 1_555 B N3 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N6 DA 7 T DA 7 1_555 B O4 DT 1 P DT 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9ICG _atom_sites.fract_transf_matrix[1][1] 0.005559 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020648 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 339 339 ZN ZN . E 4 ZN A 1 340 340 ZN ZN . F 5 NA A 1 341 341 NA NA . G 5 NA A 1 342 342 NA NA . H 4 ZN A 1 343 343 ZN ZN . I 6 DCP A 1 338 338 DCP DCP . J 7 HOH T 1 517 517 HOH HOH . J 7 HOH T 2 525 525 HOH HOH . J 7 HOH T 3 526 526 HOH HOH . J 7 HOH T 4 527 527 HOH HOH . J 7 HOH T 5 535 535 HOH HOH . J 7 HOH T 6 545 545 HOH HOH . J 7 HOH T 7 546 546 HOH HOH . J 7 HOH T 8 547 547 HOH HOH . J 7 HOH T 9 556 556 HOH HOH . J 7 HOH T 10 564 564 HOH HOH . J 7 HOH T 11 585 585 HOH HOH . J 7 HOH T 12 595 595 HOH HOH . J 7 HOH T 13 634 634 HOH HOH . J 7 HOH T 14 651 651 HOH HOH . J 7 HOH T 15 652 652 HOH HOH . K 7 HOH P 1 510 510 HOH HOH . K 7 HOH P 2 511 511 HOH HOH . K 7 HOH P 3 524 524 HOH HOH . K 7 HOH P 4 534 534 HOH HOH . K 7 HOH P 5 565 565 HOH HOH . K 7 HOH P 6 566 566 HOH HOH . K 7 HOH P 7 567 567 HOH HOH . K 7 HOH P 8 568 568 HOH HOH . K 7 HOH P 9 569 569 HOH HOH . K 7 HOH P 10 570 570 HOH HOH . K 7 HOH P 11 571 571 HOH HOH . K 7 HOH P 12 594 594 HOH HOH . K 7 HOH P 13 599 599 HOH HOH . K 7 HOH P 14 615 615 HOH HOH . K 7 HOH P 15 635 635 HOH HOH . K 7 HOH P 16 648 648 HOH HOH . K 7 HOH P 17 653 653 HOH HOH . L 7 HOH A 1 501 501 HOH HOH . L 7 HOH A 2 502 502 HOH HOH . L 7 HOH A 3 503 503 HOH HOH . L 7 HOH A 4 505 505 HOH HOH . L 7 HOH A 5 506 506 HOH HOH . L 7 HOH A 6 507 507 HOH HOH . L 7 HOH A 7 508 508 HOH HOH . L 7 HOH A 8 509 509 HOH HOH . L 7 HOH A 9 512 512 HOH HOH . L 7 HOH A 10 513 513 HOH HOH . L 7 HOH A 11 514 514 HOH HOH . L 7 HOH A 12 515 515 HOH HOH . L 7 HOH A 13 516 516 HOH HOH . L 7 HOH A 14 518 518 HOH HOH . L 7 HOH A 15 519 519 HOH HOH . L 7 HOH A 16 520 520 HOH HOH . L 7 HOH A 17 521 521 HOH HOH . L 7 HOH A 18 522 522 HOH HOH . L 7 HOH A 19 523 523 HOH HOH . L 7 HOH A 20 528 528 HOH HOH . L 7 HOH A 21 529 529 HOH HOH . L 7 HOH A 22 530 530 HOH HOH . L 7 HOH A 23 531 531 HOH HOH . L 7 HOH A 24 533 533 HOH HOH . L 7 HOH A 25 536 536 HOH HOH . L 7 HOH A 26 537 537 HOH HOH . L 7 HOH A 27 538 538 HOH HOH . L 7 HOH A 28 539 539 HOH HOH . L 7 HOH A 29 541 541 HOH HOH . L 7 HOH A 30 542 542 HOH HOH . L 7 HOH A 31 543 543 HOH HOH . L 7 HOH A 32 544 544 HOH HOH . L 7 HOH A 33 550 550 HOH HOH . L 7 HOH A 34 551 551 HOH HOH . L 7 HOH A 35 552 552 HOH HOH . L 7 HOH A 36 553 553 HOH HOH . L 7 HOH A 37 555 555 HOH HOH . L 7 HOH A 38 557 557 HOH HOH . L 7 HOH A 39 558 558 HOH HOH . L 7 HOH A 40 560 560 HOH HOH . L 7 HOH A 41 561 561 HOH HOH . L 7 HOH A 42 562 562 HOH HOH . L 7 HOH A 43 563 563 HOH HOH . L 7 HOH A 44 575 575 HOH HOH . L 7 HOH A 45 576 576 HOH HOH . L 7 HOH A 46 577 577 HOH HOH . L 7 HOH A 47 578 578 HOH HOH . L 7 HOH A 48 579 579 HOH HOH . L 7 HOH A 49 580 580 HOH HOH . L 7 HOH A 50 581 581 HOH HOH . L 7 HOH A 51 582 582 HOH HOH . L 7 HOH A 52 583 583 HOH HOH . L 7 HOH A 53 584 584 HOH HOH . L 7 HOH A 54 589 589 HOH HOH . L 7 HOH A 55 590 590 HOH HOH . L 7 HOH A 56 591 591 HOH HOH . L 7 HOH A 57 592 592 HOH HOH . L 7 HOH A 58 593 593 HOH HOH . L 7 HOH A 59 596 596 HOH HOH . L 7 HOH A 60 597 597 HOH HOH . L 7 HOH A 61 600 600 HOH HOH . L 7 HOH A 62 601 601 HOH HOH . L 7 HOH A 63 602 602 HOH HOH . L 7 HOH A 64 603 603 HOH HOH . L 7 HOH A 65 604 604 HOH HOH . L 7 HOH A 66 606 606 HOH HOH . L 7 HOH A 67 607 607 HOH HOH . L 7 HOH A 68 608 608 HOH HOH . L 7 HOH A 69 610 610 HOH HOH . L 7 HOH A 70 611 611 HOH HOH . L 7 HOH A 71 612 612 HOH HOH . L 7 HOH A 72 613 613 HOH HOH . L 7 HOH A 73 614 614 HOH HOH . L 7 HOH A 74 616 616 HOH HOH . L 7 HOH A 75 617 617 HOH HOH . L 7 HOH A 76 618 618 HOH HOH . L 7 HOH A 77 620 620 HOH HOH . L 7 HOH A 78 621 621 HOH HOH . L 7 HOH A 79 622 622 HOH HOH . L 7 HOH A 80 623 623 HOH HOH . L 7 HOH A 81 624 624 HOH HOH . L 7 HOH A 82 625 625 HOH HOH . L 7 HOH A 83 626 626 HOH HOH . L 7 HOH A 84 627 627 HOH HOH . L 7 HOH A 85 628 628 HOH HOH . L 7 HOH A 86 629 629 HOH HOH . L 7 HOH A 87 631 631 HOH HOH . L 7 HOH A 88 636 636 HOH HOH . L 7 HOH A 89 637 637 HOH HOH . L 7 HOH A 90 638 638 HOH HOH . L 7 HOH A 91 639 639 HOH HOH . L 7 HOH A 92 640 640 HOH HOH . L 7 HOH A 93 641 641 HOH HOH . L 7 HOH A 94 642 642 HOH HOH . L 7 HOH A 95 643 643 HOH HOH . L 7 HOH A 96 644 644 HOH HOH . L 7 HOH A 97 645 645 HOH HOH . L 7 HOH A 98 646 646 HOH HOH . L 7 HOH A 99 647 647 HOH HOH . L 7 HOH A 100 649 649 HOH HOH . L 7 HOH A 101 650 650 HOH HOH . L 7 HOH A 102 654 654 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' DCP . . . I 6 69.851 38.846 46.023 0.5 92.99 ? C1' DCP 338 A 1 HETATM 2 C C2' DCP . . . I 6 71.114 39.019 46.869 0.5 85.3 ? C2' DCP 338 A 1 HETATM 3 C C3' DCP . . . I 6 71.921 37.81 46.475 0.5 59.93 ? C3' DCP 338 A 1 HETATM 4 C C4' DCP . . . I 6 70.849 36.763 46.34 0.5 87.36 ? C4' DCP 338 A 1 HETATM 5 O O4' DCP . . . I 6 69.745 37.449 45.747 0.5 100 ? O4' DCP 338 A 1 HETATM 6 O O3' DCP . . . I 6 72.323 38.116 45.148 0.5 42.69 ? O3' DCP 338 A 1 HETATM 7 C C5' DCP . . . I 6 70.384 36.148 47.665 0.5 81.67 ? C5' DCP 338 A 1 HETATM 8 O O5' DCP . . . I 6 71.486 35.752 48.472 0.5 64.56 ? O5' DCP 338 A 1 HETATM 9 P PA DCP . . . I 6 71.188 35.665 50.051 0.5 59.92 ? PA DCP 338 A 1 HETATM 10 O O1A DCP . . . I 6 71.838 34.478 50.639 0.5 79.89 ? O1A DCP 338 A 1 HETATM 11 O O2A DCP . . . I 6 69.745 35.86 50.339 0.5 81.93 ? O2A DCP 338 A 1 HETATM 12 O O3A DCP . . . I 6 71.955 36.962 50.534 0.5 83.29 ? O3A DCP 338 A 1 HETATM 13 P PB DCP . . . I 6 73.512 37.331 50.805 0.5 94 ? PB DCP 338 A 1 HETATM 14 O O1B DCP . . . I 6 73.715 38.776 50.553 0.5 89.39 ? O1B DCP 338 A 1 HETATM 15 O O2B DCP . . . I 6 74.435 36.365 50.144 0.5 100 ? O2B DCP 338 A 1 HETATM 16 O O3B DCP . . . I 6 73.522 37.093 52.348 0.5 76.01 ? O3B DCP 338 A 1 HETATM 17 P PG DCP . . . I 6 74.356 36.022 53.199 0.5 35.52 ? PG DCP 338 A 1 HETATM 18 O O1G DCP . . . I 6 75.029 35.135 52.214 0.5 9.91 ? O1G DCP 338 A 1 HETATM 19 O O2G DCP . . . I 6 75.192 36.739 54.207 0.5 75.68 ? O2G DCP 338 A 1 HETATM 20 O O3G DCP . . . I 6 73.146 35.285 53.898 0.5 68.05 ? O3G DCP 338 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #