data_9ICR # _model_server_result.job_id -fjRGEjXhTiyML9dBMuQ9Q _model_server_result.datetime_utc '2024-11-28 10:35:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9icr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":341}' # _entry.id 9ICR # _exptl.entry_id 9ICR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ICR _cell.length_a 178.602 _cell.length_b 57.637 _cell.length_c 48.459 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ICR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DG 6 P DG 6 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 C O LYS 60 A LYS 60 3_547 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc3 C O LEU 62 A LEU 62 3_547 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc4 C O THR 101 A THR 101 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 C O VAL 103 A VAL 103 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc6 C O ILE 106 A ILE 106 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc7 C OD1 ASP 190 A ASP 190 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc8 H O1A DCP . A DCP 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 H O2B DCP . A DCP 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc10 H O1G DCP . A DCP 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc11 F NA NA . A NA 341 1_555 K O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 T DC 2 1_555 B N1 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 T DC 2 1_555 B O6 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 T DC 2 1_555 B N2 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 T DA 3 1_555 B N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 T DA 3 1_555 B O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 T DC 5 1_555 B N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 T DC 5 1_555 B O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 T DC 5 1_555 B N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 T DT 6 1_555 B N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 T DT 6 1_555 B N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 T DG 7 1_555 B N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 T DG 7 1_555 B O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 T DG 7 1_555 B N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9ICR _atom_sites.fract_transf_matrix[1][1] 0.005599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 339 339 MN MN . E 4 MN A 1 340 340 MN MN . F 5 NA A 1 341 341 NA NA . G 5 NA A 1 342 342 NA NA . H 6 DCP A 1 338 338 DCP DCP . I 7 HOH T 1 517 517 HOH HOH . I 7 HOH T 2 525 525 HOH HOH . I 7 HOH T 3 526 526 HOH HOH . I 7 HOH T 4 527 527 HOH HOH . I 7 HOH T 5 537 537 HOH HOH . I 7 HOH T 6 540 540 HOH HOH . I 7 HOH T 7 546 546 HOH HOH . I 7 HOH T 8 547 547 HOH HOH . I 7 HOH T 9 564 564 HOH HOH . I 7 HOH T 10 573 573 HOH HOH . I 7 HOH T 11 594 594 HOH HOH . I 7 HOH T 12 599 599 HOH HOH . I 7 HOH T 13 617 617 HOH HOH . I 7 HOH T 14 634 634 HOH HOH . I 7 HOH T 15 655 655 HOH HOH . J 7 HOH P 1 510 510 HOH HOH . J 7 HOH P 2 511 511 HOH HOH . J 7 HOH P 3 524 524 HOH HOH . J 7 HOH P 4 534 534 HOH HOH . J 7 HOH P 5 539 539 HOH HOH . J 7 HOH P 6 566 566 HOH HOH . J 7 HOH P 7 567 567 HOH HOH . J 7 HOH P 8 568 568 HOH HOH . J 7 HOH P 9 570 570 HOH HOH . J 7 HOH P 10 571 571 HOH HOH . J 7 HOH P 11 572 572 HOH HOH . J 7 HOH P 12 595 595 HOH HOH . J 7 HOH P 13 598 598 HOH HOH . J 7 HOH P 14 612 612 HOH HOH . J 7 HOH P 15 613 613 HOH HOH . J 7 HOH P 16 614 614 HOH HOH . J 7 HOH P 17 615 615 HOH HOH . J 7 HOH P 18 635 635 HOH HOH . J 7 HOH P 19 648 648 HOH HOH . K 7 HOH A 1 501 501 HOH HOH . K 7 HOH A 2 502 502 HOH HOH . K 7 HOH A 3 503 503 HOH HOH . K 7 HOH A 4 505 505 HOH HOH . K 7 HOH A 5 506 506 HOH HOH . K 7 HOH A 6 507 507 HOH HOH . K 7 HOH A 7 508 508 HOH HOH . K 7 HOH A 8 509 509 HOH HOH . K 7 HOH A 9 512 512 HOH HOH . K 7 HOH A 10 513 513 HOH HOH . K 7 HOH A 11 514 514 HOH HOH . K 7 HOH A 12 515 515 HOH HOH . K 7 HOH A 13 516 516 HOH HOH . K 7 HOH A 14 518 518 HOH HOH . K 7 HOH A 15 519 519 HOH HOH . K 7 HOH A 16 520 520 HOH HOH . K 7 HOH A 17 521 521 HOH HOH . K 7 HOH A 18 523 523 HOH HOH . K 7 HOH A 19 528 528 HOH HOH . K 7 HOH A 20 529 529 HOH HOH . K 7 HOH A 21 530 530 HOH HOH . K 7 HOH A 22 531 531 HOH HOH . K 7 HOH A 23 533 533 HOH HOH . K 7 HOH A 24 535 535 HOH HOH . K 7 HOH A 25 536 536 HOH HOH . K 7 HOH A 26 538 538 HOH HOH . K 7 HOH A 27 541 541 HOH HOH . K 7 HOH A 28 542 542 HOH HOH . K 7 HOH A 29 543 543 HOH HOH . K 7 HOH A 30 544 544 HOH HOH . K 7 HOH A 31 545 545 HOH HOH . K 7 HOH A 32 548 548 HOH HOH . K 7 HOH A 33 549 549 HOH HOH . K 7 HOH A 34 550 550 HOH HOH . K 7 HOH A 35 551 551 HOH HOH . K 7 HOH A 36 552 552 HOH HOH . K 7 HOH A 37 553 553 HOH HOH . K 7 HOH A 38 554 554 HOH HOH . K 7 HOH A 39 555 555 HOH HOH . K 7 HOH A 40 556 556 HOH HOH . K 7 HOH A 41 557 557 HOH HOH . K 7 HOH A 42 558 558 HOH HOH . K 7 HOH A 43 560 560 HOH HOH . K 7 HOH A 44 561 561 HOH HOH . K 7 HOH A 45 562 562 HOH HOH . K 7 HOH A 46 563 563 HOH HOH . K 7 HOH A 47 565 565 HOH HOH . K 7 HOH A 48 575 575 HOH HOH . K 7 HOH A 49 576 576 HOH HOH . K 7 HOH A 50 577 577 HOH HOH . K 7 HOH A 51 578 578 HOH HOH . K 7 HOH A 52 579 579 HOH HOH . K 7 HOH A 53 580 580 HOH HOH . K 7 HOH A 54 581 581 HOH HOH . K 7 HOH A 55 582 582 HOH HOH . K 7 HOH A 56 583 583 HOH HOH . K 7 HOH A 57 584 584 HOH HOH . K 7 HOH A 58 585 585 HOH HOH . K 7 HOH A 59 589 589 HOH HOH . K 7 HOH A 60 590 590 HOH HOH . K 7 HOH A 61 591 591 HOH HOH . K 7 HOH A 62 592 592 HOH HOH . K 7 HOH A 63 593 593 HOH HOH . K 7 HOH A 64 596 596 HOH HOH . K 7 HOH A 65 597 597 HOH HOH . K 7 HOH A 66 600 600 HOH HOH . K 7 HOH A 67 601 601 HOH HOH . K 7 HOH A 68 603 603 HOH HOH . K 7 HOH A 69 604 604 HOH HOH . K 7 HOH A 70 606 606 HOH HOH . K 7 HOH A 71 607 607 HOH HOH . K 7 HOH A 72 608 608 HOH HOH . K 7 HOH A 73 610 610 HOH HOH . K 7 HOH A 74 611 611 HOH HOH . K 7 HOH A 75 616 616 HOH HOH . K 7 HOH A 76 618 618 HOH HOH . K 7 HOH A 77 620 620 HOH HOH . K 7 HOH A 78 621 621 HOH HOH . K 7 HOH A 79 622 622 HOH HOH . K 7 HOH A 80 623 623 HOH HOH . K 7 HOH A 81 624 624 HOH HOH . K 7 HOH A 82 625 625 HOH HOH . K 7 HOH A 83 626 626 HOH HOH . K 7 HOH A 84 627 627 HOH HOH . K 7 HOH A 85 628 628 HOH HOH . K 7 HOH A 86 629 629 HOH HOH . K 7 HOH A 87 630 630 HOH HOH . K 7 HOH A 88 637 637 HOH HOH . K 7 HOH A 89 638 638 HOH HOH . K 7 HOH A 90 639 639 HOH HOH . K 7 HOH A 91 640 640 HOH HOH . K 7 HOH A 92 641 641 HOH HOH . K 7 HOH A 93 642 642 HOH HOH . K 7 HOH A 94 643 643 HOH HOH . K 7 HOH A 95 644 644 HOH HOH . K 7 HOH A 96 645 645 HOH HOH . K 7 HOH A 97 646 646 HOH HOH . K 7 HOH A 98 647 647 HOH HOH . K 7 HOH A 99 649 649 HOH HOH . K 7 HOH A 100 650 650 HOH HOH . K 7 HOH A 101 651 651 HOH HOH . K 7 HOH A 102 652 652 HOH HOH . K 7 HOH A 103 653 653 HOH HOH . K 7 HOH A 104 654 654 HOH HOH . K 7 HOH A 105 656 656 HOH HOH . K 7 HOH A 106 657 657 HOH HOH . K 7 HOH A 107 658 658 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 59.892 _atom_site.Cartn_y 30.166 _atom_site.Cartn_z 59.201 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 341 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #