data_9ICS # _model_server_result.job_id hAKMJHb7BLw3OpXMgOm2gA _model_server_result.datetime_utc '2024-11-28 07:35:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ics # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":338}' # _entry.id 9ICS # _exptl.entry_id 9ICS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.158 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ICS _cell.length_a 178.874 _cell.length_b 57.67 _cell.length_c 48.476 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ICS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DG 6 P DG 6 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 C O LEU 62 A LEU 62 3_547 G NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 C O THR 101 A THR 101 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc4 C O VAL 103 A VAL 103 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc5 C O ILE 106 A ILE 106 1_555 F NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 C OD1 ASP 190 A ASP 190 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc7 H O1A DCT . A DCT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.689 ? metalc ? metalc8 H O2B DCT . A DCT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc9 H O1G DCT . A DCT 338 1_555 D MN MN . A MN 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc10 D MN MN . A MN 339 1_555 K O HOH . A HOH 659 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 T DC 2 1_555 B N1 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 T DC 2 1_555 B O6 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 T DC 2 1_555 B N2 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 T DA 3 1_555 B N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 T DA 3 1_555 B O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 T DC 5 1_555 B N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 T DC 5 1_555 B O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 T DC 5 1_555 B N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 T DT 6 1_555 B N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 T DT 6 1_555 B N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 T DG 7 1_555 B N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 T DG 7 1_555 B O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 T DG 7 1_555 B N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O12 P3' _chem_comp.formula_weight 451.158 _chem_comp.id DCT _chem_comp.mon_nstd_flag n _chem_comp.name "2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE" _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9ICS _atom_sites.fract_transf_matrix[1][1] 0.005591 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020629 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MN A 1 339 339 MN MN . E 4 MN A 1 340 340 MN MN . F 5 NA A 1 341 341 NA NA . G 5 NA A 1 342 342 NA NA . H 6 DCT A 1 338 338 DCT DCT . I 7 HOH T 1 517 517 HOH HOH . I 7 HOH T 2 525 525 HOH HOH . I 7 HOH T 3 527 527 HOH HOH . I 7 HOH T 4 537 537 HOH HOH . I 7 HOH T 5 546 546 HOH HOH . I 7 HOH T 6 547 547 HOH HOH . I 7 HOH T 7 564 564 HOH HOH . I 7 HOH T 8 573 573 HOH HOH . I 7 HOH T 9 585 585 HOH HOH . I 7 HOH T 10 596 596 HOH HOH . I 7 HOH T 11 617 617 HOH HOH . I 7 HOH T 12 634 634 HOH HOH . I 7 HOH T 13 663 663 HOH HOH . J 7 HOH P 1 510 510 HOH HOH . J 7 HOH P 2 511 511 HOH HOH . J 7 HOH P 3 524 524 HOH HOH . J 7 HOH P 4 526 526 HOH HOH . J 7 HOH P 5 540 540 HOH HOH . J 7 HOH P 6 567 567 HOH HOH . J 7 HOH P 7 568 568 HOH HOH . J 7 HOH P 8 570 570 HOH HOH . J 7 HOH P 9 571 571 HOH HOH . J 7 HOH P 10 572 572 HOH HOH . J 7 HOH P 11 594 594 HOH HOH . J 7 HOH P 12 595 595 HOH HOH . J 7 HOH P 13 598 598 HOH HOH . J 7 HOH P 14 599 599 HOH HOH . J 7 HOH P 15 612 612 HOH HOH . J 7 HOH P 16 613 613 HOH HOH . J 7 HOH P 17 614 614 HOH HOH . J 7 HOH P 18 615 615 HOH HOH . J 7 HOH P 19 635 635 HOH HOH . J 7 HOH P 20 648 648 HOH HOH . J 7 HOH P 21 655 655 HOH HOH . J 7 HOH P 22 661 661 HOH HOH . J 7 HOH P 23 662 662 HOH HOH . K 7 HOH A 1 501 501 HOH HOH . K 7 HOH A 2 502 502 HOH HOH . K 7 HOH A 3 503 503 HOH HOH . K 7 HOH A 4 505 505 HOH HOH . K 7 HOH A 5 506 506 HOH HOH . K 7 HOH A 6 507 507 HOH HOH . K 7 HOH A 7 508 508 HOH HOH . K 7 HOH A 8 509 509 HOH HOH . K 7 HOH A 9 512 512 HOH HOH . K 7 HOH A 10 513 513 HOH HOH . K 7 HOH A 11 514 514 HOH HOH . K 7 HOH A 12 515 515 HOH HOH . K 7 HOH A 13 516 516 HOH HOH . K 7 HOH A 14 518 518 HOH HOH . K 7 HOH A 15 519 519 HOH HOH . K 7 HOH A 16 520 520 HOH HOH . K 7 HOH A 17 521 521 HOH HOH . K 7 HOH A 18 523 523 HOH HOH . K 7 HOH A 19 528 528 HOH HOH . K 7 HOH A 20 529 529 HOH HOH . K 7 HOH A 21 530 530 HOH HOH . K 7 HOH A 22 531 531 HOH HOH . K 7 HOH A 23 533 533 HOH HOH . K 7 HOH A 24 534 534 HOH HOH . K 7 HOH A 25 535 535 HOH HOH . K 7 HOH A 26 536 536 HOH HOH . K 7 HOH A 27 538 538 HOH HOH . K 7 HOH A 28 539 539 HOH HOH . K 7 HOH A 29 541 541 HOH HOH . K 7 HOH A 30 542 542 HOH HOH . K 7 HOH A 31 543 543 HOH HOH . K 7 HOH A 32 544 544 HOH HOH . K 7 HOH A 33 545 545 HOH HOH . K 7 HOH A 34 548 548 HOH HOH . K 7 HOH A 35 549 549 HOH HOH . K 7 HOH A 36 550 550 HOH HOH . K 7 HOH A 37 551 551 HOH HOH . K 7 HOH A 38 552 552 HOH HOH . K 7 HOH A 39 553 553 HOH HOH . K 7 HOH A 40 554 554 HOH HOH . K 7 HOH A 41 555 555 HOH HOH . K 7 HOH A 42 556 556 HOH HOH . K 7 HOH A 43 557 557 HOH HOH . K 7 HOH A 44 558 558 HOH HOH . K 7 HOH A 45 560 560 HOH HOH . K 7 HOH A 46 561 561 HOH HOH . K 7 HOH A 47 562 562 HOH HOH . K 7 HOH A 48 563 563 HOH HOH . K 7 HOH A 49 565 565 HOH HOH . K 7 HOH A 50 566 566 HOH HOH . K 7 HOH A 51 575 575 HOH HOH . K 7 HOH A 52 576 576 HOH HOH . K 7 HOH A 53 577 577 HOH HOH . K 7 HOH A 54 578 578 HOH HOH . K 7 HOH A 55 579 579 HOH HOH . K 7 HOH A 56 580 580 HOH HOH . K 7 HOH A 57 581 581 HOH HOH . K 7 HOH A 58 582 582 HOH HOH . K 7 HOH A 59 583 583 HOH HOH . K 7 HOH A 60 584 584 HOH HOH . K 7 HOH A 61 589 589 HOH HOH . K 7 HOH A 62 590 590 HOH HOH . K 7 HOH A 63 591 591 HOH HOH . K 7 HOH A 64 592 592 HOH HOH . K 7 HOH A 65 593 593 HOH HOH . K 7 HOH A 66 597 597 HOH HOH . K 7 HOH A 67 600 600 HOH HOH . K 7 HOH A 68 601 601 HOH HOH . K 7 HOH A 69 603 603 HOH HOH . K 7 HOH A 70 604 604 HOH HOH . K 7 HOH A 71 606 606 HOH HOH . K 7 HOH A 72 607 607 HOH HOH . K 7 HOH A 73 608 608 HOH HOH . K 7 HOH A 74 610 610 HOH HOH . K 7 HOH A 75 611 611 HOH HOH . K 7 HOH A 76 616 616 HOH HOH . K 7 HOH A 77 618 618 HOH HOH . K 7 HOH A 78 620 620 HOH HOH . K 7 HOH A 79 621 621 HOH HOH . K 7 HOH A 80 622 622 HOH HOH . K 7 HOH A 81 623 623 HOH HOH . K 7 HOH A 82 624 624 HOH HOH . K 7 HOH A 83 625 625 HOH HOH . K 7 HOH A 84 626 626 HOH HOH . K 7 HOH A 85 627 627 HOH HOH . K 7 HOH A 86 628 628 HOH HOH . K 7 HOH A 87 629 629 HOH HOH . K 7 HOH A 88 630 630 HOH HOH . K 7 HOH A 89 637 637 HOH HOH . K 7 HOH A 90 638 638 HOH HOH . K 7 HOH A 91 639 639 HOH HOH . K 7 HOH A 92 640 640 HOH HOH . K 7 HOH A 93 641 641 HOH HOH . K 7 HOH A 94 642 642 HOH HOH . K 7 HOH A 95 643 643 HOH HOH . K 7 HOH A 96 644 644 HOH HOH . K 7 HOH A 97 645 645 HOH HOH . K 7 HOH A 98 646 646 HOH HOH . K 7 HOH A 99 647 647 HOH HOH . K 7 HOH A 100 649 649 HOH HOH . K 7 HOH A 101 650 650 HOH HOH . K 7 HOH A 102 651 651 HOH HOH . K 7 HOH A 103 652 652 HOH HOH . K 7 HOH A 104 653 653 HOH HOH . K 7 HOH A 105 654 654 HOH HOH . K 7 HOH A 106 656 656 HOH HOH . K 7 HOH A 107 657 657 HOH HOH . K 7 HOH A 108 658 658 HOH HOH . K 7 HOH A 109 659 659 HOH HOH . K 7 HOH A 110 660 660 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCT . . . H 6 68.219 39.009 46.153 0.5 67.59 ? N1 DCT 338 A 1 HETATM 2 C C2 DCT . . . H 6 67.254 39.621 45.316 0.5 66.5 ? C2 DCT 338 A 1 HETATM 3 N N3 DCT . . . H 6 65.92 39.558 45.707 0.5 66.81 ? N3 DCT 338 A 1 HETATM 4 C C4 DCT . . . H 6 65.584 38.922 46.881 0.5 68.68 ? C4 DCT 338 A 1 HETATM 5 C C5 DCT . . . H 6 66.586 38.296 47.722 0.5 69.67 ? C5 DCT 338 A 1 HETATM 6 C C6 DCT . . . H 6 67.879 38.353 47.308 0.5 66.8 ? C6 DCT 338 A 1 HETATM 7 O O2 DCT . . . H 6 67.572 40.157 44.275 0.5 65.19 ? O2 DCT 338 A 1 HETATM 8 N N4 DCT . . . H 6 64.269 38.882 47.257 0.5 66.33 ? N4 DCT 338 A 1 HETATM 9 C C1' DCT . . . H 6 69.76 38.783 45.923 0.5 71.5 ? C1' DCT 338 A 1 HETATM 10 C C2' DCT . . . H 6 70.619 39.46 47.033 0.5 73.61 ? C2' DCT 338 A 1 HETATM 11 C C3' DCT . . . H 6 71.874 38.536 47.075 0.5 75.26 ? C3' DCT 338 A 1 HETATM 12 C C4' DCT . . . H 6 71.356 37.188 46.442 0.5 75.31 ? C4' DCT 338 A 1 HETATM 13 O O4' DCT . . . H 6 70.038 37.392 46.027 0.5 73.87 ? O4' DCT 338 A 1 HETATM 14 C C5' DCT . . . H 6 71.397 35.983 47.36 0.5 76.45 ? C5' DCT 338 A 1 HETATM 15 O O5' DCT . . . H 6 71.634 36.354 48.668 0.5 79 ? O5' DCT 338 A 1 HETATM 16 P PA DCT . . . H 6 70.976 35.911 50.084 0.5 79.81 ? PA DCT 338 A 1 HETATM 17 O O1A DCT . . . H 6 71.585 34.709 50.606 0.5 81.24 ? O1A DCT 338 A 1 HETATM 18 O O2A DCT . . . H 6 69.498 36.084 50.058 0.5 79.23 ? O2A DCT 338 A 1 HETATM 19 O O3A DCT . . . H 6 71.615 37.094 50.851 0.5 80.76 ? O3A DCT 338 A 1 HETATM 20 P PB DCT . . . H 6 73.126 37.58 50.907 0.5 80.31 ? PB DCT 338 A 1 HETATM 21 O O1B DCT . . . H 6 73.198 38.912 50.251 0.5 81.87 ? O1B DCT 338 A 1 HETATM 22 O O2B DCT . . . H 6 74.007 36.5 50.396 0.5 82.21 ? O2B DCT 338 A 1 HETATM 23 O O3B DCT . . . H 6 73.312 37.761 52.467 0.5 76.42 ? O3B DCT 338 A 1 HETATM 24 P PG DCT . . . H 6 73.669 36.692 53.609 0.5 66.43 ? PG DCT 338 A 1 HETATM 25 O O1G DCT . . . H 6 73.884 35.439 53.081 0.5 59.88 ? O1G DCT 338 A 1 HETATM 26 O O2G DCT . . . H 6 74.759 37.254 54.456 0.5 67.39 ? O2G DCT 338 A 1 HETATM 27 O O3G DCT . . . H 6 72.309 36.616 54.352 0.5 71.01 ? O3G DCT 338 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #