data_9ICX # _model_server_result.job_id Kkzl6Z_rwmCnZcuC-DhBlA _model_server_result.datetime_utc '2024-11-21 18:09:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9icx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":341}' # _entry.id 9ICX # _exptl.entry_id 9ICX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9ICX _cell.length_a 179.01 _cell.length_b 57.729 _cell.length_c 48.511 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ICX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OP1 DG 6 P DG 6 1_555 D NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc2 C O LEU 62 A LEU 62 3_547 E NA NA . A NA 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc3 C O THR 101 A THR 101 1_555 D NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc4 C O VAL 103 A VAL 103 1_555 D NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc5 C O ILE 106 A ILE 106 1_555 D NA NA . A NA 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 T DC 2 1_555 B N1 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 T DC 2 1_555 B O6 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 T DC 2 1_555 B N2 DG 6 P DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 T DA 3 1_555 B N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 T DA 3 1_555 B O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 T DT 4 1_555 B N1 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 T DT 4 1_555 B N6 DA 4 P DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 T DC 5 1_555 B N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 T DC 5 1_555 B O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 T DC 5 1_555 B N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 T DT 6 1_555 B N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 T DT 6 1_555 B N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 6 T DG 7 1_555 B N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 6 T DG 7 1_555 B O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 6 T DG 7 1_555 B N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9ICX _atom_sites.fract_transf_matrix[1][1] 0.005586 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017322 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA A 1 341 341 NA NA . E 4 NA A 1 342 342 NA NA . F 5 HOH T 1 512 512 HOH HOH . F 5 HOH T 2 517 517 HOH HOH . F 5 HOH T 3 525 525 HOH HOH . F 5 HOH T 4 546 546 HOH HOH . F 5 HOH T 5 547 547 HOH HOH . F 5 HOH T 6 564 564 HOH HOH . F 5 HOH T 7 573 573 HOH HOH . F 5 HOH T 8 585 585 HOH HOH . F 5 HOH T 9 596 596 HOH HOH . F 5 HOH T 10 617 617 HOH HOH . F 5 HOH T 11 634 634 HOH HOH . G 5 HOH P 1 510 510 HOH HOH . G 5 HOH P 2 511 511 HOH HOH . G 5 HOH P 3 524 524 HOH HOH . G 5 HOH P 4 526 526 HOH HOH . G 5 HOH P 5 534 534 HOH HOH . G 5 HOH P 6 568 568 HOH HOH . G 5 HOH P 7 570 570 HOH HOH . G 5 HOH P 8 571 571 HOH HOH . G 5 HOH P 9 572 572 HOH HOH . G 5 HOH P 10 595 595 HOH HOH . G 5 HOH P 11 612 612 HOH HOH . G 5 HOH P 12 614 614 HOH HOH . G 5 HOH P 13 615 615 HOH HOH . G 5 HOH P 14 648 648 HOH HOH . H 5 HOH A 1 502 502 HOH HOH . H 5 HOH A 2 503 503 HOH HOH . H 5 HOH A 3 505 505 HOH HOH . H 5 HOH A 4 506 506 HOH HOH . H 5 HOH A 5 507 507 HOH HOH . H 5 HOH A 6 508 508 HOH HOH . H 5 HOH A 7 509 509 HOH HOH . H 5 HOH A 8 513 513 HOH HOH . H 5 HOH A 9 514 514 HOH HOH . H 5 HOH A 10 515 515 HOH HOH . H 5 HOH A 11 516 516 HOH HOH . H 5 HOH A 12 518 518 HOH HOH . H 5 HOH A 13 520 520 HOH HOH . H 5 HOH A 14 521 521 HOH HOH . H 5 HOH A 15 530 530 HOH HOH . H 5 HOH A 16 531 531 HOH HOH . H 5 HOH A 17 532 532 HOH HOH . H 5 HOH A 18 533 533 HOH HOH . H 5 HOH A 19 536 536 HOH HOH . H 5 HOH A 20 539 539 HOH HOH . H 5 HOH A 21 541 541 HOH HOH . H 5 HOH A 22 542 542 HOH HOH . H 5 HOH A 23 543 543 HOH HOH . H 5 HOH A 24 544 544 HOH HOH . H 5 HOH A 25 545 545 HOH HOH . H 5 HOH A 26 548 548 HOH HOH . H 5 HOH A 27 549 549 HOH HOH . H 5 HOH A 28 550 550 HOH HOH . H 5 HOH A 29 552 552 HOH HOH . H 5 HOH A 30 553 553 HOH HOH . H 5 HOH A 31 555 555 HOH HOH . H 5 HOH A 32 556 556 HOH HOH . H 5 HOH A 33 557 557 HOH HOH . H 5 HOH A 34 558 558 HOH HOH . H 5 HOH A 35 560 560 HOH HOH . H 5 HOH A 36 561 561 HOH HOH . H 5 HOH A 37 562 562 HOH HOH . H 5 HOH A 38 565 565 HOH HOH . H 5 HOH A 39 566 566 HOH HOH . H 5 HOH A 40 575 575 HOH HOH . H 5 HOH A 41 576 576 HOH HOH . H 5 HOH A 42 577 577 HOH HOH . H 5 HOH A 43 578 578 HOH HOH . H 5 HOH A 44 579 579 HOH HOH . H 5 HOH A 45 581 581 HOH HOH . H 5 HOH A 46 582 582 HOH HOH . H 5 HOH A 47 584 584 HOH HOH . H 5 HOH A 48 589 589 HOH HOH . H 5 HOH A 49 590 590 HOH HOH . H 5 HOH A 50 591 591 HOH HOH . H 5 HOH A 51 592 592 HOH HOH . H 5 HOH A 52 593 593 HOH HOH . H 5 HOH A 53 597 597 HOH HOH . H 5 HOH A 54 600 600 HOH HOH . H 5 HOH A 55 601 601 HOH HOH . H 5 HOH A 56 603 603 HOH HOH . H 5 HOH A 57 604 604 HOH HOH . H 5 HOH A 58 606 606 HOH HOH . H 5 HOH A 59 607 607 HOH HOH . H 5 HOH A 60 608 608 HOH HOH . H 5 HOH A 61 611 611 HOH HOH . H 5 HOH A 62 618 618 HOH HOH . H 5 HOH A 63 622 622 HOH HOH . H 5 HOH A 64 623 623 HOH HOH . H 5 HOH A 65 624 624 HOH HOH . H 5 HOH A 66 625 625 HOH HOH . H 5 HOH A 67 627 627 HOH HOH . H 5 HOH A 68 628 628 HOH HOH . H 5 HOH A 69 629 629 HOH HOH . H 5 HOH A 70 630 630 HOH HOH . H 5 HOH A 71 637 637 HOH HOH . H 5 HOH A 72 638 638 HOH HOH . H 5 HOH A 73 640 640 HOH HOH . H 5 HOH A 74 641 641 HOH HOH . H 5 HOH A 75 642 642 HOH HOH . H 5 HOH A 76 643 643 HOH HOH . H 5 HOH A 77 644 644 HOH HOH . H 5 HOH A 78 645 645 HOH HOH . H 5 HOH A 79 647 647 HOH HOH . H 5 HOH A 80 649 649 HOH HOH . H 5 HOH A 81 650 650 HOH HOH . H 5 HOH A 82 651 651 HOH HOH . H 5 HOH A 83 652 652 HOH HOH . H 5 HOH A 84 653 653 HOH HOH . H 5 HOH A 85 654 654 HOH HOH . H 5 HOH A 86 656 656 HOH HOH . H 5 HOH A 87 657 657 HOH HOH . H 5 HOH A 88 658 658 HOH HOH . H 5 HOH A 89 659 659 HOH HOH . H 5 HOH A 90 660 660 HOH HOH . H 5 HOH A 91 661 661 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 60.056 _atom_site.Cartn_y 30.146 _atom_site.Cartn_z 59.158 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.69 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 341 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #