data_9IK1 # _model_server_result.job_id 93Qanvtm4w6_Qio5H8LSig _model_server_result.datetime_utc '2024-10-19 02:19:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ik1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 9IK1 # _exptl.entry_id 9IK1 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 456.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9IK1 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 J N N ? 2 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 107 1_555 A SG CYS 148 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 111 A CYS 116 1_555 A SG CYS 132 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 117 A CYS 122 1_555 A SG CYS 142 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 198 A CYS 203 1_555 A SG CYS 208 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 242 A CYS 247 1_555 A SG CYS 251 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 102 B CYS 107 1_555 B SG CYS 148 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 B SG CYS 111 B CYS 116 1_555 B SG CYS 132 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 117 B CYS 122 1_555 B SG CYS 142 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 198 B CYS 203 1_555 B SG CYS 208 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 242 B CYS 247 1_555 B SG CYS 251 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 C SG CYS 102 C CYS 107 1_555 C SG CYS 148 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 C SG CYS 111 C CYS 116 1_555 C SG CYS 132 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 C SG CYS 117 C CYS 122 1_555 C SG CYS 142 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf14 C SG CYS 198 C CYS 203 1_555 C SG CYS 208 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 C SG CYS 242 C CYS 247 1_555 C SG CYS 251 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A ND2 ASN 165 A ASN 170 1_555 F C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 189 A ASN 194 1_555 G C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 285 A ASN 290 1_555 H C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 B ND2 ASN 165 B ASN 170 1_555 L C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 B ND2 ASN 189 B ASN 194 1_555 M C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 B ND2 ASN 285 B ASN 290 1_555 N C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale7 C ND2 ASN 165 C ASN 170 1_555 R C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale8 C ND2 ASN 189 C ASN 194 1_555 S C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale9 C ND2 ASN 285 C ASN 290 1_555 T C1 NAG . C NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? metalc ? metalc1 A OD2 ASP 153 A ASP 158 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc2 E O1G ATP . A ATP 402 1_555 O MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc3 I MG MG . A MG 406 1_555 Q O1G ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc4 B OD2 ASP 153 B ASP 158 1_555 O MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 K O2G ATP . B ATP 402 1_555 U MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 C OD2 ASP 153 C ASP 158 1_555 U MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? # _chem_comp.formula 'C25 H28 N8 O' _chem_comp.formula_weight 456.543 _chem_comp.id A1L2M _chem_comp.mon_nstd_flag . _chem_comp.name 4-[2-cyclopropyl-7-[[(1~{R})-1-naphthalen-2-ylethyl]amino]-[1,2,4]triazolo[1,5-a]pyrimidin-5-yl]piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 A1L2M doub 1 n y C5 C6 A1L2M sing 2 n y C4 C3 A1L2M sing 3 n y C6 C1 A1L2M doub 4 n y C3 C2 A1L2M doub 5 n y C1 C2 A1L2M sing 6 n y C1 C7 A1L2M sing 7 n y C2 C10 A1L2M sing 8 n y C7 C8 A1L2M doub 9 n y C10 C9 A1L2M doub 10 n y C8 C9 A1L2M sing 11 n y C8 C12 A1L2M sing 12 n n C12 N13 A1L2M sing 13 n n C12 C42 A1L2M sing 14 n n N13 C21 A1L2M sing 15 n n C21 C26 A1L2M doub 16 n y C21 N22 A1L2M sing 17 n y C26 C25 A1L2M sing 18 n y N33 N22 A1L2M sing 19 n y N33 C34 A1L2M doub 20 n y N22 C23 A1L2M sing 21 n y C38 C37 A1L2M sing 22 n n C38 C36 A1L2M sing 23 n n C37 C36 A1L2M sing 24 n n C34 C36 A1L2M sing 25 n n C34 N35 A1L2M sing 26 n y C25 N27 A1L2M sing 27 n n C25 N24 A1L2M doub 28 n y C32 N27 A1L2M sing 29 n n C32 C31 A1L2M sing 30 n n C23 N24 A1L2M sing 31 n y C23 N35 A1L2M doub 32 n y N27 C28 A1L2M sing 33 n n C31 N30 A1L2M sing 34 n n C28 C29 A1L2M sing 35 n n N30 C29 A1L2M sing 36 n n N30 C39 A1L2M sing 37 n n N40 C39 A1L2M sing 38 n n C39 O41 A1L2M doub 39 n n C3 H1 A1L2M sing 40 n n C4 H2 A1L2M sing 41 n n C5 H3 A1L2M sing 42 n n C6 H4 A1L2M sing 43 n n C10 H5 A1L2M sing 44 n n C12 H6 A1L2M sing 45 n n C26 H7 A1L2M sing 46 n n C28 H8 A1L2M sing 47 n n C28 H9 A1L2M sing 48 n n C29 H10 A1L2M sing 49 n n C29 H11 A1L2M sing 50 n n C31 H12 A1L2M sing 51 n n C31 H13 A1L2M sing 52 n n C32 H14 A1L2M sing 53 n n C32 H15 A1L2M sing 54 n n C36 H16 A1L2M sing 55 n n C37 H17 A1L2M sing 56 n n C37 H18 A1L2M sing 57 n n C38 H19 A1L2M sing 58 n n C38 H20 A1L2M sing 59 n n C42 H21 A1L2M sing 60 n n C42 H22 A1L2M sing 61 n n C42 H23 A1L2M sing 62 n n C7 H24 A1L2M sing 63 n n C9 H25 A1L2M sing 64 n n N13 H26 A1L2M sing 65 n n N40 H27 A1L2M sing 66 n n N40 H28 A1L2M sing 67 n n # _atom_sites.entry_id 9IK1 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A1L2M A 1 401 1 A1L2M KGR . E 3 ATP A 1 402 1 ATP ATP . F 4 NAG A 1 403 1 NAG NAG . G 4 NAG A 1 404 2 NAG NAG . H 4 NAG A 1 405 7 NAG NAG . I 5 MG A 1 406 3 MG MG . J 2 A1L2M B 1 401 2 A1L2M KGR . K 3 ATP B 1 402 2 ATP ATP . L 4 NAG B 1 403 3 NAG NAG . M 4 NAG B 1 404 4 NAG NAG . N 4 NAG B 1 405 8 NAG NAG . O 5 MG B 1 406 1 MG MG . P 2 A1L2M C 1 401 3 A1L2M KGR . Q 3 ATP C 1 402 3 ATP ATP . R 4 NAG C 1 403 5 NAG NAG . S 4 NAG C 1 404 6 NAG NAG . T 4 NAG C 1 405 9 NAG NAG . U 5 MG C 1 406 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L2M . . . D 2 122.967 127.423 136.23 1 188.98 ? C1 A1L2M 401 A 1 HETATM 2 C C2 A1L2M . . . D 2 122.368 126.181 136.558 1 188.98 ? C2 A1L2M 401 A 1 HETATM 3 C C3 A1L2M . . . D 2 121.319 125.691 135.736 1 188.98 ? C3 A1L2M 401 A 1 HETATM 4 C C4 A1L2M . . . D 2 120.894 126.397 134.656 1 188.98 ? C4 A1L2M 401 A 1 HETATM 5 C C5 A1L2M . . . D 2 121.487 127.625 134.333 1 188.98 ? C5 A1L2M 401 A 1 HETATM 6 C C6 A1L2M . . . D 2 122.494 128.125 135.096 1 188.98 ? C6 A1L2M 401 A 1 HETATM 7 C C10 A1L2M . . . D 2 122.836 125.478 137.688 1 188.98 ? C10 A1L2M 401 A 1 HETATM 8 C C12 A1L2M . . . D 2 125.578 127.77 138.998 1 188.98 ? C12 A1L2M 401 A 1 HETATM 9 C C21 A1L2M . . . D 2 126.268 126.479 140.989 1 188.98 ? C21 A1L2M 401 A 1 HETATM 10 C C23 A1L2M . . . D 2 127.072 126.743 143.218 1 188.98 ? C23 A1L2M 401 A 1 HETATM 11 C C25 A1L2M . . . D 2 125.263 125.399 142.937 1 188.98 ? C25 A1L2M 401 A 1 HETATM 12 C C26 A1L2M . . . D 2 125.294 125.64 141.525 1 188.98 ? C26 A1L2M 401 A 1 HETATM 13 C C28 A1L2M . . . D 2 124.454 124.228 144.888 1 188.98 ? C28 A1L2M 401 A 1 HETATM 14 C C29 A1L2M . . . D 2 123.251 124.668 145.675 1 188.98 ? C29 A1L2M 401 A 1 HETATM 15 C C31 A1L2M . . . D 2 121.961 123.897 143.753 1 188.98 ? C31 A1L2M 401 A 1 HETATM 16 C C32 A1L2M . . . D 2 122.92 124.866 143.097 1 188.98 ? C32 A1L2M 401 A 1 HETATM 17 C C34 A1L2M . . . D 2 128.688 128.038 142.866 1 188.98 ? C34 A1L2M 401 A 1 HETATM 18 C C36 A1L2M . . . D 2 129.85 128.885 143.146 1 188.98 ? C36 A1L2M 401 A 1 HETATM 19 C C37 A1L2M . . . D 2 130.104 130.087 142.299 1 188.98 ? C37 A1L2M 401 A 1 HETATM 20 C C38 A1L2M . . . D 2 130.986 128.913 142.177 1 188.98 ? C38 A1L2M 401 A 1 HETATM 21 C C39 A1L2M . . . D 2 121.205 123.343 146.03 1 188.98 ? C39 A1L2M 401 A 1 HETATM 22 C C42 A1L2M . . . D 2 125.065 128.776 140.026 1 188.98 ? C42 A1L2M 401 A 1 HETATM 23 C C7 A1L2M . . . D 2 124.012 127.913 137.045 1 188.98 ? C7 A1L2M 401 A 1 HETATM 24 C C8 A1L2M . . . D 2 124.455 127.218 138.136 1 188.98 ? C8 A1L2M 401 A 1 HETATM 25 C C9 A1L2M . . . D 2 123.846 125.98 138.453 1 188.98 ? C9 A1L2M 401 A 1 HETATM 26 N N13 A1L2M . . . D 2 126.347 126.732 139.679 1 188.98 ? N13 A1L2M 401 A 1 HETATM 27 N N22 A1L2M . . . D 2 127.154 127.006 141.899 1 188.98 ? N22 A1L2M 401 A 1 HETATM 28 N N24 A1L2M . . . D 2 126.138 125.936 143.794 1 188.98 ? N24 A1L2M 401 A 1 HETATM 29 N N27 A1L2M . . . D 2 124.307 124.585 143.475 1 188.98 ? N27 A1L2M 401 A 1 HETATM 30 N N30 A1L2M . . . D 2 122.074 123.948 145.207 1 188.98 ? N30 A1L2M 401 A 1 HETATM 31 N N33 A1L2M . . . D 2 128.187 127.842 141.652 1 188.98 ? N33 A1L2M 401 A 1 HETATM 32 N N35 A1L2M . . . D 2 128.048 127.396 143.845 1 188.98 ? N35 A1L2M 401 A 1 HETATM 33 N N40 A1L2M . . . D 2 120.15 122.77 145.467 1 188.98 ? N40 A1L2M 401 A 1 HETATM 34 O O41 A1L2M . . . D 2 121.388 123.322 147.247 1 188.98 ? O41 A1L2M 401 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #