data_9IK1
#
_model_server_result.job_id            y8KAeIGi_uv0QNl9hVwN7Q 
_model_server_result.datetime_utc      '2024-10-19 02:18:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ik1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":402}' 
#
_entry.id    9IK1 
#
_exptl.entry_id    9IK1 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9IK1 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9IK1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 K N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 102 A CYS 107 1_555 A SG CYS 148 A CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 111 A CYS 116 1_555 A SG CYS 132 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 A SG CYS 117 A CYS 122 1_555 A SG CYS 142 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf4 A SG CYS 198 A CYS 203 1_555 A SG CYS 208 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 A SG CYS 242 A CYS 247 1_555 A SG CYS 251 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 B SG CYS 102 B CYS 107 1_555 B SG CYS 148 B CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 B SG CYS 111 B CYS 116 1_555 B SG CYS 132 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf8 B SG CYS 117 B CYS 122 1_555 B SG CYS 142 B CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 B SG CYS 198 B CYS 203 1_555 B SG CYS 208 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf10 B SG CYS 242 B CYS 247 1_555 B SG CYS 251 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf11 C SG CYS 102 C CYS 107 1_555 C SG CYS 148 C CYS 153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf12 C SG CYS 111 C CYS 116 1_555 C SG CYS 132 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf13 C SG CYS 117 C CYS 122 1_555 C SG CYS 142 C CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf14 C SG CYS 198 C CYS 203 1_555 C SG CYS 208 C CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf15 C SG CYS 242 C CYS 247 1_555 C SG CYS 251 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A ND2 ASN 165 A ASN 170 1_555 F C1 NAG . A NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale2 A ND2 ASN 189 A ASN 194 1_555 G C1 NAG . A NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale3 A ND2 ASN 285 A ASN 290 1_555 H C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale4 B ND2 ASN 165 B ASN 170 1_555 L C1 NAG . B NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale5 B ND2 ASN 189 B ASN 194 1_555 M C1 NAG . B NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 B ND2 ASN 285 B ASN 290 1_555 N C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale7 C ND2 ASN 165 C ASN 170 1_555 R C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale8 C ND2 ASN 189 C ASN 194 1_555 S C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? 
covale ? covale9 C ND2 ASN 285 C ASN 290 1_555 T C1 NAG . C NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? 
metalc ? metalc1 A OD2 ASP 153 A ASP 158 1_555 I MG MG . A MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc2 E O1G ATP . A ATP 402 1_555 O MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc3 I MG MG . A MG 406 1_555 Q O1G ATP . C ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc4 B OD2 ASP 153 B ASP 158 1_555 O MG MG . B MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc5 K O2G ATP . B ATP 402 1_555 U MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc6 C OD2 ASP 153 C ASP 158 1_555 U MG MG . C MG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 137 n n 
PG O2G ATP sing 138 n n 
PG O3G ATP sing 139 n n 
PG O3B ATP sing 140 n n 
O2G HOG2 ATP sing 141 n n 
O3G HOG3 ATP sing 142 n n 
PB O1B ATP doub 143 n n 
PB O2B ATP sing 144 n n 
PB O3B ATP sing 145 n n 
PB O3A ATP sing 146 n n 
O2B HOB2 ATP sing 147 n n 
PA O1A ATP doub 148 n n 
PA O2A ATP sing 149 n n 
PA O3A ATP sing 150 n n 
PA O5' ATP sing 151 n n 
O2A HOA2 ATP sing 152 n n 
O5' C5' ATP sing 153 n n 
C5' C4' ATP sing 154 n n 
C5' "H5'1" ATP sing 155 n n 
C5' "H5'2" ATP sing 156 n n 
C4' O4' ATP sing 157 n n 
C4' C3' ATP sing 158 n n 
C4' H4' ATP sing 159 n n 
O4' C1' ATP sing 160 n n 
C3' O3' ATP sing 161 n n 
C3' C2' ATP sing 162 n n 
C3' H3' ATP sing 163 n n 
O3' HO3' ATP sing 164 n n 
C2' O2' ATP sing 165 n n 
C2' C1' ATP sing 166 n n 
C2' H2' ATP sing 167 n n 
O2' HO2' ATP sing 168 n n 
C1' N9 ATP sing 169 n n 
C1' H1' ATP sing 170 n n 
N9 C8 ATP sing 171 n y 
N9 C4 ATP sing 172 n y 
C8 N7 ATP doub 173 n y 
C8 H8 ATP sing 174 n n 
N7 C5 ATP sing 175 n y 
C5 C6 ATP sing 176 n y 
C5 C4 ATP doub 177 n y 
C6 N6 ATP sing 178 n n 
C6 N1 ATP doub 179 n y 
N6 HN61 ATP sing 180 n n 
N6 HN62 ATP sing 181 n n 
N1 C2 ATP sing 182 n y 
C2 N3 ATP doub 183 n y 
C2 H2 ATP sing 184 n n 
N3 C4 ATP sing 185 n y 
#
_atom_sites.entry_id                     9IK1 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A1L2M A 1 401 1 A1L2M KGR . 
E 3 ATP A 1 402 1 ATP ATP . 
F 4 NAG A 1 403 1 NAG NAG . 
G 4 NAG A 1 404 2 NAG NAG . 
H 4 NAG A 1 405 7 NAG NAG . 
I 5 MG A 1 406 3 MG MG . 
J 2 A1L2M B 1 401 2 A1L2M KGR . 
K 3 ATP B 1 402 2 ATP ATP . 
L 4 NAG B 1 403 3 NAG NAG . 
M 4 NAG B 1 404 4 NAG NAG . 
N 4 NAG B 1 405 8 NAG NAG . 
O 5 MG B 1 406 1 MG MG . 
P 2 A1L2M C 1 401 3 A1L2M KGR . 
Q 3 ATP C 1 402 3 ATP ATP . 
R 4 NAG C 1 403 5 NAG NAG . 
S 4 NAG C 1 404 6 NAG NAG . 
T 4 NAG C 1 405 9 NAG NAG . 
U 5 MG C 1 406 2 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 3 142.483 114.795 86 1 87.8 ? PG ATP 402 C 1 
HETATM 2 O O1G ATP . . . Q 3 143.019 115.746 84.97 1 87.8 ? O1G ATP 402 C 1 
HETATM 3 O O2G ATP . . . Q 3 142.88 113.363 85.779 1 87.8 ? O2G ATP 402 C 1 
HETATM 4 O O3G ATP . . . Q 3 141.034 114.972 86.343 1 87.8 ? O3G ATP 402 C 1 
HETATM 5 P PB ATP . . . Q 3 143.187 116.681 87.968 1 87.8 ? PB ATP 402 C 1 
HETATM 6 O O1B ATP . . . Q 3 144.321 117.472 87.384 1 87.8 ? O1B ATP 402 C 1 
HETATM 7 O O2B ATP . . . Q 3 141.788 117.206 87.868 1 87.8 ? O2B ATP 402 C 1 
HETATM 8 O O3B ATP . . . Q 3 143.251 115.205 87.343 1 87.8 ? O3B ATP 402 C 1 
HETATM 9 P PA ATP . . . Q 3 142.585 116.414 90.763 1 87.8 ? PA ATP 402 C 1 
HETATM 10 O O1A ATP . . . Q 3 141.144 116.397 90.345 1 87.8 ? O1A ATP 402 C 1 
HETATM 11 O O2A ATP . . . Q 3 143.089 117.488 91.683 1 87.8 ? O2A ATP 402 C 1 
HETATM 12 O O3A ATP . . . Q 3 143.565 116.353 89.491 1 87.8 ? O3A ATP 402 C 1 
HETATM 13 O O5' ATP . . . Q 3 142.91 114.971 91.374 1 87.8 ? O5' ATP 402 C 1 
HETATM 14 C C5' ATP . . . Q 3 144.183 114.682 91.934 1 87.8 ? C5' ATP 402 C 1 
HETATM 15 C C4' ATP . . . Q 3 144.596 113.295 91.469 1 87.8 ? C4' ATP 402 C 1 
HETATM 16 O O4' ATP . . . Q 3 143.607 112.35 91.853 1 87.8 ? O4' ATP 402 C 1 
HETATM 17 C C3' ATP . . . Q 3 144.694 113.233 89.961 1 87.8 ? C3' ATP 402 C 1 
HETATM 18 O O3' ATP . . . Q 3 145.992 112.77 89.604 1 87.8 ? O3' ATP 402 C 1 
HETATM 19 C C2' ATP . . . Q 3 143.695 112.2 89.508 1 87.8 ? C2' ATP 402 C 1 
HETATM 20 O O2' ATP . . . Q 3 144.34 111.309 88.605 1 87.8 ? O2' ATP 402 C 1 
HETATM 21 C C1' ATP . . . Q 3 143.31 111.47 90.773 1 87.8 ? C1' ATP 402 C 1 
HETATM 22 N N9 ATP . . . Q 3 141.869 111.142 90.802 1 87.8 ? N9 ATP 402 C 1 
HETATM 23 C C8 ATP . . . Q 3 140.871 112.019 90.968 1 87.8 ? C8 ATP 402 C 1 
HETATM 24 N N7 ATP . . . Q 3 139.672 111.396 90.96 1 87.8 ? N7 ATP 402 C 1 
HETATM 25 C C5 ATP . . . Q 3 139.899 110.088 90.788 1 87.8 ? C5 ATP 402 C 1 
HETATM 26 C C6 ATP . . . Q 3 139.073 108.873 90.686 1 87.8 ? C6 ATP 402 C 1 
HETATM 27 N N6 ATP . . . Q 3 137.729 108.943 90.769 1 87.8 ? N6 ATP 402 C 1 
HETATM 28 N N1 ATP . . . Q 3 139.699 107.698 90.508 1 87.8 ? N1 ATP 402 C 1 
HETATM 29 C C2 ATP . . . Q 3 141.033 107.623 90.424 1 87.8 ? C2 ATP 402 C 1 
HETATM 30 N N3 ATP . . . Q 3 141.845 108.685 90.508 1 87.8 ? N3 ATP 402 C 1 
HETATM 31 C C4 ATP . . . Q 3 141.347 109.926 90.685 1 87.8 ? C4 ATP 402 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           31 
#