data_9IK3 # _model_server_result.job_id R-pJ0Ce90tSvu0bszGvQWw _model_server_result.datetime_utc '2025-07-06 15:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ik3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3003}' # _entry.id 9IK3 # _exptl.entry_id 9IK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.87 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,5,3',5'-TETRAIODO-L-THYRONINE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.77 _cell.angle_gamma 90 _cell.entry_id 9IK3 _cell.length_a 59.473 _cell.length_b 88.392 _cell.length_c 59.641 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C15 H11 I4 N O4' _chem_comp.formula_weight 776.87 _chem_comp.id T44 _chem_comp.mon_nstd_flag . _chem_comp.name "3,5,3',5'-TETRAIODO-L-THYRONINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 T44 doub 290 n y C1 C6 T44 sing 291 n y C1 C7 T44 sing 292 n n C2 C3 T44 sing 293 n y C2 H1 T44 sing 294 n n C3 C4 T44 doub 295 n y C3 I3 T44 sing 296 n n C4 C5 T44 sing 297 n y C4 O4 T44 sing 298 n n C5 C6 T44 doub 299 n y C5 I5 T44 sing 300 n n C6 H6 T44 sing 301 n n C7 CA T44 sing 302 n n C7 H71 T44 sing 303 n n C7 H72 T44 sing 304 n n CA C T44 sing 305 n n CA N T44 sing 306 n n CA HA T44 sing 307 n n C O T44 doub 308 n n C OXT T44 sing 309 n n C1' C2' T44 doub 310 n y C1' C6' T44 sing 311 n y C1' O4 T44 sing 312 n n C2' C3' T44 sing 313 n y C2' H2' T44 sing 314 n n C3' C4' T44 doub 315 n y C3' I3' T44 sing 316 n n C4' C5' T44 sing 317 n y C4' O4' T44 sing 318 n n C5' C6' T44 doub 319 n y C5' I5' T44 sing 320 n n C6' H6' T44 sing 321 n n N H T44 sing 322 n n N H2 T44 sing 323 n n O4' HO4' T44 sing 324 n n OXT HXT T44 sing 325 n n # _atom_sites.entry_id 9IK3 _atom_sites.fract_transf_matrix[1][1] 0.016814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004119 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011313 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T44 A 1 3001 3001 T44 T44 . C 2 T44 A 1 3002 3002 T44 T44 . D 2 T44 A 1 3003 3003 T44 T44 . E 2 T44 A 1 3004 3004 T44 T44 . F 3 HOH A 1 3101 62 HOH HOH . F 3 HOH A 2 3102 15 HOH HOH . F 3 HOH A 3 3103 71 HOH HOH . F 3 HOH A 4 3104 29 HOH HOH . F 3 HOH A 5 3105 47 HOH HOH . F 3 HOH A 6 3106 77 HOH HOH . F 3 HOH A 7 3107 17 HOH HOH . F 3 HOH A 8 3108 19 HOH HOH . F 3 HOH A 9 3109 76 HOH HOH . F 3 HOH A 10 3110 56 HOH HOH . F 3 HOH A 11 3111 35 HOH HOH . F 3 HOH A 12 3112 22 HOH HOH . F 3 HOH A 13 3113 4 HOH HOH . F 3 HOH A 14 3114 13 HOH HOH . F 3 HOH A 15 3115 44 HOH HOH . F 3 HOH A 16 3116 32 HOH HOH . F 3 HOH A 17 3117 8 HOH HOH . F 3 HOH A 18 3118 24 HOH HOH . F 3 HOH A 19 3119 45 HOH HOH . F 3 HOH A 20 3120 14 HOH HOH . F 3 HOH A 21 3121 58 HOH HOH . F 3 HOH A 22 3122 21 HOH HOH . F 3 HOH A 23 3123 9 HOH HOH . F 3 HOH A 24 3124 28 HOH HOH . F 3 HOH A 25 3125 23 HOH HOH . F 3 HOH A 26 3126 7 HOH HOH . F 3 HOH A 27 3127 46 HOH HOH . F 3 HOH A 28 3128 40 HOH HOH . F 3 HOH A 29 3129 12 HOH HOH . F 3 HOH A 30 3130 11 HOH HOH . F 3 HOH A 31 3131 6 HOH HOH . F 3 HOH A 32 3132 53 HOH HOH . F 3 HOH A 33 3133 65 HOH HOH . F 3 HOH A 34 3134 27 HOH HOH . F 3 HOH A 35 3135 37 HOH HOH . F 3 HOH A 36 3136 1 HOH HOH . F 3 HOH A 37 3137 49 HOH HOH . F 3 HOH A 38 3138 34 HOH HOH . F 3 HOH A 39 3139 33 HOH HOH . F 3 HOH A 40 3140 30 HOH HOH . F 3 HOH A 41 3141 26 HOH HOH . F 3 HOH A 42 3142 3 HOH HOH . F 3 HOH A 43 3143 20 HOH HOH . F 3 HOH A 44 3144 18 HOH HOH . F 3 HOH A 45 3145 52 HOH HOH . F 3 HOH A 46 3146 59 HOH HOH . F 3 HOH A 47 3147 54 HOH HOH . F 3 HOH A 48 3148 69 HOH HOH . F 3 HOH A 49 3149 10 HOH HOH . F 3 HOH A 50 3150 16 HOH HOH . F 3 HOH A 51 3151 5 HOH HOH . F 3 HOH A 52 3152 41 HOH HOH . F 3 HOH A 53 3153 39 HOH HOH . F 3 HOH A 54 3154 42 HOH HOH . F 3 HOH A 55 3155 31 HOH HOH . F 3 HOH A 56 3156 78 HOH HOH . F 3 HOH A 57 3157 50 HOH HOH . F 3 HOH A 58 3158 57 HOH HOH . F 3 HOH A 59 3159 51 HOH HOH . F 3 HOH A 60 3160 25 HOH HOH . F 3 HOH A 61 3161 72 HOH HOH . F 3 HOH A 62 3162 61 HOH HOH . F 3 HOH A 63 3163 64 HOH HOH . F 3 HOH A 64 3164 74 HOH HOH . F 3 HOH A 65 3165 43 HOH HOH . F 3 HOH A 66 3166 48 HOH HOH . F 3 HOH A 67 3167 36 HOH HOH . F 3 HOH A 68 3168 60 HOH HOH . F 3 HOH A 69 3169 67 HOH HOH . F 3 HOH A 70 3170 55 HOH HOH . F 3 HOH A 71 3171 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T44 . . . D 2 28.367 10.943 29.27 1 57.76 ? C1 T44 3003 A 1 HETATM 2 C C2 T44 . . . D 2 27.1 10.568 29.686 1 44.41 ? C2 T44 3003 A 1 HETATM 3 C C3 T44 . . . D 2 26.59 11.006 30.903 1 50.75 ? C3 T44 3003 A 1 HETATM 4 C C4 T44 . . . D 2 27.347 11.849 31.713 1 43.08 ? C4 T44 3003 A 1 HETATM 5 C C5 T44 . . . D 2 28.627 12.212 31.295 1 55.42 ? C5 T44 3003 A 1 HETATM 6 C C6 T44 . . . D 2 29.13 11.771 30.078 1 46.81 ? C6 T44 3003 A 1 HETATM 7 C C7 T44 . . . D 2 28.913 10.459 27.923 1 46.04 ? C7 T44 3003 A 1 HETATM 8 C CA T44 . . . D 2 28.974 8.936 27.788 1 50.61 ? CA T44 3003 A 1 HETATM 9 C C T44 . . . D 2 29.688 8.567 26.489 1 51.77 ? C T44 3003 A 1 HETATM 10 C C1' T44 . . . D 2 25.972 13.387 32.985 1 48.41 ? C1' T44 3003 A 1 HETATM 11 C C2' T44 . . . D 2 25.808 14.267 31.917 1 43.87 ? C2' T44 3003 A 1 HETATM 12 C C3' T44 . . . D 2 24.903 15.333 32 1 49.12 ? C3' T44 3003 A 1 HETATM 13 C C4' T44 . . . D 2 24.169 15.502 33.184 1 45.57 ? C4' T44 3003 A 1 HETATM 14 C C5' T44 . . . D 2 24.325 14.632 34.264 1 49.77 ? C5' T44 3003 A 1 HETATM 15 C C6' T44 . . . D 2 25.232 13.584 34.149 1 47.2 ? C6' T44 3003 A 1 HETATM 16 N N T44 . . . D 2 29.708 8.364 28.904 1 48.18 ? N T44 3003 A 1 HETATM 17 O O4 T44 . . . D 2 26.871 12.298 32.962 1 44.64 ? O4 T44 3003 A 1 HETATM 18 O O4' T44 . . . D 2 23.261 16.56 33.301 1 52.56 ? O4' T44 3003 A 1 HETATM 19 O O T44 . . . D 2 30.84 8.068 26.53 1 60.09 ? O T44 3003 A 1 HETATM 20 O OXT T44 . . . D 2 29.136 8.763 25.377 1 51.02 ? OXT T44 3003 A 1 HETATM 21 I I3 T44 . . . D 2 24.645 10.37 31.458 1 56.59 ? I3 T44 3003 A 1 HETATM 22 I I3' T44 . . . D 2 24.655 16.671 30.35 1 70.37 ? I3' T44 3003 A 1 HETATM 23 I I5 T44 . . . D 2 29.834 13.469 32.491 1 61.72 ? I5 T44 3003 A 1 HETATM 24 I I5' T44 . . . D 2 23.213 14.877 36.068 1 47.19 ? I5' T44 3003 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #