data_9IL8 # _model_server_result.job_id CGp5FyM8gbQ0LGB-a_KPGA _model_server_result.datetime_utc '2025-07-07 21:42:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9il8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 9IL8 # _exptl.entry_id 9IL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.27 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-3-methyl-5-[(sulfooxy)amino]-1,2,5,6-tetrahydropyridine-2-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.705 _cell.angle_gamma 90 _cell.entry_id 9IL8 _cell.length_a 35.355 _cell.length_b 50.746 _cell.length_c 129.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9IL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 45 1_555 A SG CYS 217 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? disulf ? disulf2 B SG CYS 47 B CYS 45 1_555 B SG CYS 217 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? covale ? covale1 A OG SER 48 A SER 46 1_555 C CAH JXG . A JXG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 B OG SER 48 B SER 46 1_555 F CAH JXG . B JXG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C8 H13 N3 O6 S' _chem_comp.formula_weight 279.27 _chem_comp.id JXG _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-3-methyl-5-[(sulfooxy)amino]-1,2,5,6-tetrahydropyridine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETX2514 bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CAM JXG sing 173 n n CAM O2 JXG doub 174 n n CAM CAP JXG sing 175 n n CAD CAN JXG sing 176 n n CAP CAN JXG sing 177 n n CAP NAQ JXG sing 178 n n O CAH JXG doub 179 n n CAN CAI JXG doub 180 n n NAQ CAH JXG sing 181 n n NAQ CAJ JXG sing 182 n n CAI CAO JXG sing 183 n n CAJ CAO JXG sing 184 n n CAO NAK JXG sing 185 n n OAF SAR JXG doub 186 n n OAL SAR JXG sing 187 n n OAL NAK JXG sing 188 n n SAR OAE JXG doub 189 n n SAR OAG JXG sing 190 n n NAK H1 JXG sing 191 n n CAO H2 JXG sing 192 n n CAJ H3 JXG sing 193 n n CAJ H4 JXG sing 194 n n CAI H5 JXG sing 195 n n CAD H6 JXG sing 196 n n CAD H7 JXG sing 197 n n CAD H8 JXG sing 198 n n CAP H9 JXG sing 199 n n N H10 JXG sing 200 n n N H11 JXG sing 201 n n CAH H13 JXG sing 202 n n OAG H14 JXG sing 203 n n # _atom_sites.entry_id 9IL8 _atom_sites.fract_transf_matrix[1][1] 0.028285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001336 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JXG A 1 301 301 JXG JXG . D 3 PEG A 1 302 302 PEG PEG . E 4 CL A 1 303 1 CL CL . F 2 JXG B 1 301 301 JXG JXG . G 3 PEG B 1 302 302 PEG PEG . H 5 HOH A 1 401 89 HOH HOH . H 5 HOH A 2 402 65 HOH HOH . H 5 HOH A 3 403 95 HOH HOH . H 5 HOH A 4 404 67 HOH HOH . H 5 HOH A 5 405 97 HOH HOH . H 5 HOH A 6 406 42 HOH HOH . H 5 HOH A 7 407 64 HOH HOH . H 5 HOH A 8 408 69 HOH HOH . H 5 HOH A 9 409 116 HOH HOH . H 5 HOH A 10 410 8 HOH HOH . H 5 HOH A 11 411 73 HOH HOH . H 5 HOH A 12 412 39 HOH HOH . H 5 HOH A 13 413 30 HOH HOH . H 5 HOH A 14 414 107 HOH HOH . H 5 HOH A 15 415 106 HOH HOH . H 5 HOH A 16 416 100 HOH HOH . H 5 HOH A 17 417 115 HOH HOH . H 5 HOH A 18 418 80 HOH HOH . H 5 HOH A 19 419 99 HOH HOH . H 5 HOH A 20 420 41 HOH HOH . H 5 HOH A 21 421 104 HOH HOH . H 5 HOH A 22 422 11 HOH HOH . H 5 HOH A 23 423 47 HOH HOH . H 5 HOH A 24 424 105 HOH HOH . H 5 HOH A 25 425 38 HOH HOH . H 5 HOH A 26 426 82 HOH HOH . H 5 HOH A 27 427 62 HOH HOH . H 5 HOH A 28 428 81 HOH HOH . H 5 HOH A 29 429 29 HOH HOH . H 5 HOH A 30 430 21 HOH HOH . H 5 HOH A 31 431 2 HOH HOH . H 5 HOH A 32 432 36 HOH HOH . H 5 HOH A 33 433 9 HOH HOH . H 5 HOH A 34 434 88 HOH HOH . H 5 HOH A 35 435 58 HOH HOH . H 5 HOH A 36 436 61 HOH HOH . H 5 HOH A 37 437 91 HOH HOH . H 5 HOH A 38 438 48 HOH HOH . H 5 HOH A 39 439 60 HOH HOH . H 5 HOH A 40 440 57 HOH HOH . H 5 HOH A 41 441 55 HOH HOH . H 5 HOH A 42 442 46 HOH HOH . H 5 HOH A 43 443 35 HOH HOH . H 5 HOH A 44 444 3 HOH HOH . H 5 HOH A 45 445 54 HOH HOH . H 5 HOH A 46 446 40 HOH HOH . H 5 HOH A 47 447 112 HOH HOH . H 5 HOH A 48 448 94 HOH HOH . H 5 HOH A 49 449 110 HOH HOH . I 5 HOH B 1 401 1 HOH HOH . I 5 HOH B 2 402 79 HOH HOH . I 5 HOH B 3 403 53 HOH HOH . I 5 HOH B 4 404 37 HOH HOH . I 5 HOH B 5 405 90 HOH HOH . I 5 HOH B 6 406 23 HOH HOH . I 5 HOH B 7 407 114 HOH HOH . I 5 HOH B 8 408 4 HOH HOH . I 5 HOH B 9 409 101 HOH HOH . I 5 HOH B 10 410 117 HOH HOH . I 5 HOH B 11 411 12 HOH HOH . I 5 HOH B 12 412 98 HOH HOH . I 5 HOH B 13 413 28 HOH HOH . I 5 HOH B 14 414 74 HOH HOH . I 5 HOH B 15 415 78 HOH HOH . I 5 HOH B 16 416 85 HOH HOH . I 5 HOH B 17 417 43 HOH HOH . I 5 HOH B 18 418 19 HOH HOH . I 5 HOH B 19 419 51 HOH HOH . I 5 HOH B 20 420 113 HOH HOH . I 5 HOH B 21 421 108 HOH HOH . I 5 HOH B 22 422 84 HOH HOH . I 5 HOH B 23 423 16 HOH HOH . I 5 HOH B 24 424 32 HOH HOH . I 5 HOH B 25 425 75 HOH HOH . I 5 HOH B 26 426 70 HOH HOH . I 5 HOH B 27 427 50 HOH HOH . I 5 HOH B 28 428 102 HOH HOH . I 5 HOH B 29 429 63 HOH HOH . I 5 HOH B 30 430 68 HOH HOH . I 5 HOH B 31 431 86 HOH HOH . I 5 HOH B 32 432 25 HOH HOH . I 5 HOH B 33 433 59 HOH HOH . I 5 HOH B 34 434 15 HOH HOH . I 5 HOH B 35 435 49 HOH HOH . I 5 HOH B 36 436 83 HOH HOH . I 5 HOH B 37 437 52 HOH HOH . I 5 HOH B 38 438 93 HOH HOH . I 5 HOH B 39 439 6 HOH HOH . I 5 HOH B 40 440 87 HOH HOH . I 5 HOH B 41 441 56 HOH HOH . I 5 HOH B 42 442 76 HOH HOH . I 5 HOH B 43 443 7 HOH HOH . I 5 HOH B 44 444 17 HOH HOH . I 5 HOH B 45 445 10 HOH HOH . I 5 HOH B 46 446 24 HOH HOH . I 5 HOH B 47 447 27 HOH HOH . I 5 HOH B 48 448 33 HOH HOH . I 5 HOH B 49 449 72 HOH HOH . I 5 HOH B 50 450 34 HOH HOH . I 5 HOH B 51 451 14 HOH HOH . I 5 HOH B 52 452 92 HOH HOH . I 5 HOH B 53 453 5 HOH HOH . I 5 HOH B 54 454 13 HOH HOH . I 5 HOH B 55 455 22 HOH HOH . I 5 HOH B 56 456 44 HOH HOH . I 5 HOH B 57 457 18 HOH HOH . I 5 HOH B 58 458 77 HOH HOH . I 5 HOH B 59 459 118 HOH HOH . I 5 HOH B 60 460 20 HOH HOH . I 5 HOH B 61 461 119 HOH HOH . I 5 HOH B 62 462 26 HOH HOH . I 5 HOH B 63 463 120 HOH HOH . I 5 HOH B 64 464 121 HOH HOH . I 5 HOH B 65 465 66 HOH HOH . I 5 HOH B 66 466 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAG JXG . . . C 2 -5.474 -2.928 55.906 1 44.42 ? OAG JXG 301 A 1 HETATM 2 S SAR JXG . . . C 2 -4.765 -3.066 57.173 1 44.04 ? SAR JXG 301 A 1 HETATM 3 O OAE JXG . . . C 2 -4.45 -1.79 57.814 1 41.01 ? OAE JXG 301 A 1 HETATM 4 O OAF JXG . . . C 2 -3.619 -3.921 57.045 1 47.26 ? OAF JXG 301 A 1 HETATM 5 O OAL JXG . . . C 2 -5.695 -3.911 58.122 1 46.63 ? OAL JXG 301 A 1 HETATM 6 N NAK JXG . . . C 2 -6.076 -5.147 57.44 1 47.43 ? NAK JXG 301 A 1 HETATM 7 C CAO JXG . . . C 2 -5.653 -6.44 58.034 1 37.76 ? CAO JXG 301 A 1 HETATM 8 C CAJ JXG . . . C 2 -4.779 -7.285 57.095 1 32.3 ? CAJ JXG 301 A 1 HETATM 9 C CAI JXG . . . C 2 -5.084 -6.308 59.427 1 37.84 ? CAI JXG 301 A 1 HETATM 10 C CAN JXG . . . C 2 -3.826 -6.555 59.746 1 36.71 ? CAN JXG 301 A 1 HETATM 11 C CAD JXG . . . C 2 -3.283 -6.358 61.135 1 40.46 ? CAD JXG 301 A 1 HETATM 12 C CAP JXG . . . C 2 -2.843 -7.032 58.677 1 33.29 ? CAP JXG 301 A 1 HETATM 13 C CAM JXG . . . C 2 -2.539 -8.474 58.725 1 32.55 ? CAM JXG 301 A 1 HETATM 14 O O2 JXG . . . C 2 -1.537 -8.857 58.124 1 35.62 ? O2 JXG 301 A 1 HETATM 15 N N JXG . . . C 2 -3.412 -9.263 59.342 1 36.6 ? N JXG 301 A 1 HETATM 16 N NAQ JXG . . . C 2 -3.376 -6.945 57.318 1 29.57 ? NAQ JXG 301 A 1 HETATM 17 C CAH JXG . . . C 2 -2.569 -6.444 56.398 1 23.59 ? CAH JXG 301 A 1 HETATM 18 O O JXG . . . C 2 -1.53 -5.868 56.692 1 29.53 ? O JXG 301 A 1 # _model_server_stats.io_time_ms 136 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #