data_9IL9
#
_model_server_result.job_id            uZ_Yfu-7XLJY1LXDpDxUaQ 
_model_server_result.datetime_utc      '2025-07-05 01:48:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9il9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    9IL9 
#
_exptl.entry_id    9IL9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.26 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.112 
_cell.angle_gamma         90 
_cell.entry_id            9IL9 
_cell.length_a            71.582 
_cell.length_b            51.871 
_cell.length_c            77.429 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9IL9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 47 A CYS 45 1_555 A SG CYS 217 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
disulf ? disulf2 B SG CYS 47 B CYS 45 1_555 B SG CYS 217 B CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
covale ? covale1 A OG SER 48 A SER 46 1_555 C CAN NXL . A NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale2 B OG SER 48 B SER 46 1_555 H CAN NXL . B NXL 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? 
#
_chem_comp.formula           'C7 H13 N3 O6 S' 
_chem_comp.formula_weight    267.26 
_chem_comp.id                NXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'avibactam, bound form;NXL104, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAK CAO NXL sing 246 n n 
CAJ CAO NXL sing 247 n n 
CAJ N NXL sing 248 n n 
OAL SAR NXL sing 249 n n 
CAO CAH NXL sing 250 n n 
CAN N NXL sing 251 n n 
CAN OAC NXL doub 252 n n 
OAG SAR NXL doub 253 n n 
N CA NXL sing 254 n n 
SAR OAE NXL doub 255 n n 
SAR OAD NXL sing 256 n n 
O C NXL doub 257 n n 
CAH CB NXL sing 258 n n 
CA C NXL sing 259 n n 
CA CB NXL sing 260 n n 
C NAA NXL sing 261 n n 
NAK OAL NXL sing 262 n n 
CAN H1 NXL sing 263 n n 
CAJ H2 NXL sing 264 n n 
CAJ H3 NXL sing 265 n n 
CA H4 NXL sing 266 n n 
NAA H5 NXL sing 267 n n 
NAA H6 NXL sing 268 n n 
CB H7 NXL sing 269 n n 
CB H8 NXL sing 270 n n 
CAH H9 NXL sing 271 n n 
CAH H10 NXL sing 272 n n 
CAO H11 NXL sing 273 n n 
NAK H12 NXL sing 274 n n 
OAD H13 NXL sing 275 n n 
#
_atom_sites.entry_id                     9IL9 
_atom_sites.fract_transf_matrix[1][1]    0.01397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006253 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019279 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01415 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NXL A 1 301 301 NXL NXL . 
D 3 PEG A 1 302 302 PEG PEG . 
E 4 PO4 A 1 303 2 PO4 PO4 . 
F 5 CL A 1 304 1 CL CL . 
G 5 CL A 1 305 2 CL CL . 
H 2 NXL B 1 301 301 NXL NXL . 
I 6 PG4 B 1 302 302 PG4 PG4 . 
J 7 EDO B 1 303 303 EDO EDO . 
K 8 HOH A 1 401 164 HOH HOH . 
K 8 HOH A 2 402 159 HOH HOH . 
K 8 HOH A 3 403 153 HOH HOH . 
K 8 HOH A 4 404 150 HOH HOH . 
K 8 HOH A 5 405 157 HOH HOH . 
K 8 HOH A 6 406 22 HOH HOH . 
K 8 HOH A 7 407 170 HOH HOH . 
K 8 HOH A 8 408 165 HOH HOH . 
K 8 HOH A 9 409 135 HOH HOH . 
K 8 HOH A 10 410 81 HOH HOH . 
K 8 HOH A 11 411 28 HOH HOH . 
K 8 HOH A 12 412 173 HOH HOH . 
K 8 HOH A 13 413 127 HOH HOH . 
K 8 HOH A 14 414 118 HOH HOH . 
K 8 HOH A 15 415 3 HOH HOH . 
K 8 HOH A 16 416 158 HOH HOH . 
K 8 HOH A 17 417 40 HOH HOH . 
K 8 HOH A 18 418 112 HOH HOH . 
K 8 HOH A 19 419 67 HOH HOH . 
K 8 HOH A 20 420 53 HOH HOH . 
K 8 HOH A 21 421 163 HOH HOH . 
K 8 HOH A 22 422 110 HOH HOH . 
K 8 HOH A 23 423 119 HOH HOH . 
K 8 HOH A 24 424 61 HOH HOH . 
K 8 HOH A 25 425 103 HOH HOH . 
K 8 HOH A 26 426 108 HOH HOH . 
K 8 HOH A 27 427 187 HOH HOH . 
K 8 HOH A 28 428 64 HOH HOH . 
K 8 HOH A 29 429 37 HOH HOH . 
K 8 HOH A 30 430 96 HOH HOH . 
K 8 HOH A 31 431 17 HOH HOH . 
K 8 HOH A 32 432 168 HOH HOH . 
K 8 HOH A 33 433 154 HOH HOH . 
K 8 HOH A 34 434 188 HOH HOH . 
K 8 HOH A 35 435 1 HOH HOH . 
K 8 HOH A 36 436 24 HOH HOH . 
K 8 HOH A 37 437 149 HOH HOH . 
K 8 HOH A 38 438 47 HOH HOH . 
K 8 HOH A 39 439 10 HOH HOH . 
K 8 HOH A 40 440 162 HOH HOH . 
K 8 HOH A 41 441 18 HOH HOH . 
K 8 HOH A 42 442 51 HOH HOH . 
K 8 HOH A 43 443 23 HOH HOH . 
K 8 HOH A 44 444 142 HOH HOH . 
K 8 HOH A 45 445 122 HOH HOH . 
K 8 HOH A 46 446 114 HOH HOH . 
K 8 HOH A 47 447 8 HOH HOH . 
K 8 HOH A 48 448 156 HOH HOH . 
K 8 HOH A 49 449 55 HOH HOH . 
K 8 HOH A 50 450 59 HOH HOH . 
K 8 HOH A 51 451 101 HOH HOH . 
K 8 HOH A 52 452 105 HOH HOH . 
K 8 HOH A 53 453 126 HOH HOH . 
K 8 HOH A 54 454 29 HOH HOH . 
K 8 HOH A 55 455 39 HOH HOH . 
K 8 HOH A 56 456 171 HOH HOH . 
K 8 HOH A 57 457 169 HOH HOH . 
K 8 HOH A 58 458 69 HOH HOH . 
K 8 HOH A 59 459 12 HOH HOH . 
K 8 HOH A 60 460 60 HOH HOH . 
K 8 HOH A 61 461 94 HOH HOH . 
K 8 HOH A 62 462 180 HOH HOH . 
K 8 HOH A 63 463 16 HOH HOH . 
K 8 HOH A 64 464 9 HOH HOH . 
K 8 HOH A 65 465 77 HOH HOH . 
K 8 HOH A 66 466 128 HOH HOH . 
K 8 HOH A 67 467 111 HOH HOH . 
K 8 HOH A 68 468 104 HOH HOH . 
K 8 HOH A 69 469 58 HOH HOH . 
K 8 HOH A 70 470 167 HOH HOH . 
K 8 HOH A 71 471 145 HOH HOH . 
K 8 HOH A 72 472 102 HOH HOH . 
K 8 HOH A 73 473 90 HOH HOH . 
K 8 HOH A 74 474 52 HOH HOH . 
K 8 HOH A 75 475 130 HOH HOH . 
K 8 HOH A 76 476 30 HOH HOH . 
K 8 HOH A 77 477 89 HOH HOH . 
K 8 HOH A 78 478 83 HOH HOH . 
K 8 HOH A 79 479 129 HOH HOH . 
K 8 HOH A 80 480 113 HOH HOH . 
K 8 HOH A 81 481 181 HOH HOH . 
K 8 HOH A 82 482 133 HOH HOH . 
K 8 HOH A 83 483 179 HOH HOH . 
K 8 HOH A 84 484 138 HOH HOH . 
K 8 HOH A 85 485 109 HOH HOH . 
K 8 HOH A 86 486 175 HOH HOH . 
K 8 HOH A 87 487 174 HOH HOH . 
K 8 HOH A 88 488 184 HOH HOH . 
L 8 HOH B 1 401 152 HOH HOH . 
L 8 HOH B 2 402 84 HOH HOH . 
L 8 HOH B 3 403 73 HOH HOH . 
L 8 HOH B 4 404 71 HOH HOH . 
L 8 HOH B 5 405 132 HOH HOH . 
L 8 HOH B 6 406 20 HOH HOH . 
L 8 HOH B 7 407 151 HOH HOH . 
L 8 HOH B 8 408 26 HOH HOH . 
L 8 HOH B 9 409 4 HOH HOH . 
L 8 HOH B 10 410 185 HOH HOH . 
L 8 HOH B 11 411 25 HOH HOH . 
L 8 HOH B 12 412 48 HOH HOH . 
L 8 HOH B 13 413 95 HOH HOH . 
L 8 HOH B 14 414 92 HOH HOH . 
L 8 HOH B 15 415 49 HOH HOH . 
L 8 HOH B 16 416 11 HOH HOH . 
L 8 HOH B 17 417 41 HOH HOH . 
L 8 HOH B 18 418 106 HOH HOH . 
L 8 HOH B 19 419 141 HOH HOH . 
L 8 HOH B 20 420 78 HOH HOH . 
L 8 HOH B 21 421 79 HOH HOH . 
L 8 HOH B 22 422 134 HOH HOH . 
L 8 HOH B 23 423 125 HOH HOH . 
L 8 HOH B 24 424 183 HOH HOH . 
L 8 HOH B 25 425 93 HOH HOH . 
L 8 HOH B 26 426 5 HOH HOH . 
L 8 HOH B 27 427 2 HOH HOH . 
L 8 HOH B 28 428 70 HOH HOH . 
L 8 HOH B 29 429 91 HOH HOH . 
L 8 HOH B 30 430 143 HOH HOH . 
L 8 HOH B 31 431 80 HOH HOH . 
L 8 HOH B 32 432 19 HOH HOH . 
L 8 HOH B 33 433 100 HOH HOH . 
L 8 HOH B 34 434 137 HOH HOH . 
L 8 HOH B 35 435 21 HOH HOH . 
L 8 HOH B 36 436 107 HOH HOH . 
L 8 HOH B 37 437 82 HOH HOH . 
L 8 HOH B 38 438 44 HOH HOH . 
L 8 HOH B 39 439 63 HOH HOH . 
L 8 HOH B 40 440 136 HOH HOH . 
L 8 HOH B 41 441 42 HOH HOH . 
L 8 HOH B 42 442 32 HOH HOH . 
L 8 HOH B 43 443 98 HOH HOH . 
L 8 HOH B 44 444 68 HOH HOH . 
L 8 HOH B 45 445 57 HOH HOH . 
L 8 HOH B 46 446 27 HOH HOH . 
L 8 HOH B 47 447 14 HOH HOH . 
L 8 HOH B 48 448 45 HOH HOH . 
L 8 HOH B 49 449 35 HOH HOH . 
L 8 HOH B 50 450 7 HOH HOH . 
L 8 HOH B 51 451 75 HOH HOH . 
L 8 HOH B 52 452 31 HOH HOH . 
L 8 HOH B 53 453 120 HOH HOH . 
L 8 HOH B 54 454 123 HOH HOH . 
L 8 HOH B 55 455 56 HOH HOH . 
L 8 HOH B 56 456 72 HOH HOH . 
L 8 HOH B 57 457 97 HOH HOH . 
L 8 HOH B 58 458 155 HOH HOH . 
L 8 HOH B 59 459 76 HOH HOH . 
L 8 HOH B 60 460 85 HOH HOH . 
L 8 HOH B 61 461 115 HOH HOH . 
L 8 HOH B 62 462 33 HOH HOH . 
L 8 HOH B 63 463 88 HOH HOH . 
L 8 HOH B 64 464 65 HOH HOH . 
L 8 HOH B 65 465 54 HOH HOH . 
L 8 HOH B 66 466 15 HOH HOH . 
L 8 HOH B 67 467 86 HOH HOH . 
L 8 HOH B 68 468 38 HOH HOH . 
L 8 HOH B 69 469 62 HOH HOH . 
L 8 HOH B 70 470 147 HOH HOH . 
L 8 HOH B 71 471 116 HOH HOH . 
L 8 HOH B 72 472 144 HOH HOH . 
L 8 HOH B 73 473 139 HOH HOH . 
L 8 HOH B 74 474 13 HOH HOH . 
L 8 HOH B 75 475 117 HOH HOH . 
L 8 HOH B 76 476 36 HOH HOH . 
L 8 HOH B 77 477 99 HOH HOH . 
L 8 HOH B 78 478 46 HOH HOH . 
L 8 HOH B 79 479 50 HOH HOH . 
L 8 HOH B 80 480 140 HOH HOH . 
L 8 HOH B 81 481 131 HOH HOH . 
L 8 HOH B 82 482 6 HOH HOH . 
L 8 HOH B 83 483 160 HOH HOH . 
L 8 HOH B 84 484 34 HOH HOH . 
L 8 HOH B 85 485 87 HOH HOH . 
L 8 HOH B 86 486 161 HOH HOH . 
L 8 HOH B 87 487 74 HOH HOH . 
L 8 HOH B 88 488 148 HOH HOH . 
L 8 HOH B 89 489 186 HOH HOH . 
L 8 HOH B 90 490 66 HOH HOH . 
L 8 HOH B 91 491 43 HOH HOH . 
L 8 HOH B 92 492 182 HOH HOH . 
L 8 HOH B 93 493 146 HOH HOH . 
L 8 HOH B 94 494 172 HOH HOH . 
L 8 HOH B 95 495 124 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAC NXL . . . H 2 -12.402 3.465 -31.774 1 13.25 ? OAC NXL 301 B 1 
HETATM 2 C CAN NXL . . . H 2 -12.798 4.159 -30.837 1 12.33 ? CAN NXL 301 B 1 
HETATM 3 N N NXL . . . H 2 -13.81 5.046 -30.893 1 12.95 ? N NXL 301 B 1 
HETATM 4 C CAJ NXL . . . H 2 -14.411 5.595 -29.674 1 13.73 ? CAJ NXL 301 B 1 
HETATM 5 C CA NXL . . . H 2 -14.395 5.519 -32.152 1 13.23 ? CA NXL 301 B 1 
HETATM 6 C C NXL . . . H 2 -13.973 6.979 -32.196 1 15.83 ? C NXL 301 B 1 
HETATM 7 O O NXL . . . H 2 -14.609 7.744 -32.818 1 17.88 ? O NXL 301 B 1 
HETATM 8 N NAA NXL . . . H 2 -12.738 7.418 -31.575 1 16.47 ? NAA NXL 301 B 1 
HETATM 9 C CB NXL . . . H 2 -15.911 5.361 -32.208 1 13.18 ? CB NXL 301 B 1 
HETATM 10 C CAH NXL . . . H 2 -16.632 5.746 -30.925 1 14.38 ? CAH NXL 301 B 1 
HETATM 11 C CAO NXL . . . H 2 -15.93 5.265 -29.643 1 14.71 ? CAO NXL 301 B 1 
HETATM 12 N NAK NXL . . . H 2 -16.337 4.035 -28.924 1 17.96 ? NAK NXL 301 B 1 
HETATM 13 O OAL NXL . . . H 2 -15.804 2.895 -29.657 1 24.09 ? OAL NXL 301 B 1 
HETATM 14 S SAR NXL . . . H 2 -15.144 1.44 -29.176 1 24.5 ? SAR NXL 301 B 1 
HETATM 15 O OAD NXL . . . H 2 -13.925 1.689 -29.888 1 23.32 ? OAD NXL 301 B 1 
HETATM 16 O OAE NXL . . . H 2 -15.912 0.338 -29.801 1 21.28 ? OAE NXL 301 B 1 
HETATM 17 O OAG NXL . . . H 2 -14.908 1.256 -27.746 1 29.2 ? OAG NXL 301 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           17 
#