data_9ILE # _model_server_result.job_id brAMPxaDKZ1gF5AM_i70-A _model_server_result.datetime_utc '2025-07-07 06:25:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ile # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9ILE # _exptl.entry_id 9ILE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 350.391 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-N-(piperidin-4-yl)-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.866 _cell.angle_gamma 90 _cell.entry_id 9ILE _cell.length_a 34.852 _cell.length_b 50.44 _cell.length_c 60.62 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9ILE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 45 1_555 A SG CYS 217 A CYS 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? covale ? covale1 A OG SER 48 A SER 46 1_555 B C8 MK7 . A MK7 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? # _chem_comp.formula 'C12 H22 N4 O6 S' _chem_comp.formula_weight 350.391 _chem_comp.id MK7 _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-N-(piperidin-4-yl)-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MK-7655, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 S23 MK7 doub 246 n n O18 C8 MK7 doub 247 n n C2 C5 MK7 sing 248 n n C2 C9 MK7 sing 249 n n N13 C5 MK7 sing 250 n n N13 C6 MK7 sing 251 n n C3 C9 MK7 sing 252 n n C3 C6 MK7 sing 253 n n N14 C9 MK7 sing 254 n n N14 C11 MK7 sing 255 n n O17 S23 MK7 doub 256 n n C10 C1 MK7 sing 257 n n C10 C11 MK7 sing 258 n n C10 N16 MK7 sing 259 n n S23 O20 MK7 sing 260 n n S23 O22 MK7 sing 261 n n C1 C4 MK7 sing 262 n n C8 N16 MK7 sing 263 n n C11 O19 MK7 doub 264 n n N16 C7 MK7 sing 265 n n O22 N15 MK7 sing 266 n n N15 C12 MK7 sing 267 n n C4 C12 MK7 sing 268 n n C12 C7 MK7 sing 269 n n C4 H1 MK7 sing 270 n n C4 H2 MK7 sing 271 n n C5 H3 MK7 sing 272 n n C5 H4 MK7 sing 273 n n C6 H5 MK7 sing 274 n n C6 H6 MK7 sing 275 n n C7 H7 MK7 sing 276 n n C7 H8 MK7 sing 277 n n C8 H9 MK7 sing 278 n n C10 H10 MK7 sing 279 n n C1 H11 MK7 sing 280 n n C1 H12 MK7 sing 281 n n C2 H13 MK7 sing 282 n n C2 H14 MK7 sing 283 n n C3 H15 MK7 sing 284 n n C3 H16 MK7 sing 285 n n C9 H17 MK7 sing 286 n n C12 H18 MK7 sing 287 n n N13 H19 MK7 sing 288 n n N14 H21 MK7 sing 289 n n N15 H22 MK7 sing 290 n n O20 H20 MK7 sing 291 n n # _atom_sites.entry_id 9ILE _atom_sites.fract_transf_matrix[1][1] 0.028693 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00499 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019826 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MK7 A 1 301 301 MK7 MK7 . C 3 PEG A 1 302 303 PEG PEG . D 4 PG4 A 1 303 304 PG4 PG4 . E 3 PEG A 1 304 305 PEG PEG . F 5 EDO A 1 305 306 EDO EDO . G 6 CL A 1 306 2 CL CL . H 7 HOH A 1 401 26 HOH HOH . H 7 HOH A 2 402 35 HOH HOH . H 7 HOH A 3 403 42 HOH HOH . H 7 HOH A 4 404 8 HOH HOH . H 7 HOH A 5 405 37 HOH HOH . H 7 HOH A 6 406 25 HOH HOH . H 7 HOH A 7 407 13 HOH HOH . H 7 HOH A 8 408 30 HOH HOH . H 7 HOH A 9 409 14 HOH HOH . H 7 HOH A 10 410 39 HOH HOH . H 7 HOH A 11 411 16 HOH HOH . H 7 HOH A 12 412 6 HOH HOH . H 7 HOH A 13 413 22 HOH HOH . H 7 HOH A 14 414 33 HOH HOH . H 7 HOH A 15 415 46 HOH HOH . H 7 HOH A 16 416 40 HOH HOH . H 7 HOH A 17 417 17 HOH HOH . H 7 HOH A 18 418 18 HOH HOH . H 7 HOH A 19 419 36 HOH HOH . H 7 HOH A 20 420 31 HOH HOH . H 7 HOH A 21 421 41 HOH HOH . H 7 HOH A 22 422 20 HOH HOH . H 7 HOH A 23 423 21 HOH HOH . H 7 HOH A 24 424 45 HOH HOH . H 7 HOH A 25 425 10 HOH HOH . H 7 HOH A 26 426 3 HOH HOH . H 7 HOH A 27 427 28 HOH HOH . H 7 HOH A 28 428 7 HOH HOH . H 7 HOH A 29 429 24 HOH HOH . H 7 HOH A 30 430 27 HOH HOH . H 7 HOH A 31 431 23 HOH HOH . H 7 HOH A 32 432 9 HOH HOH . H 7 HOH A 33 433 34 HOH HOH . H 7 HOH A 34 434 15 HOH HOH . H 7 HOH A 35 435 12 HOH HOH . H 7 HOH A 36 436 19 HOH HOH . H 7 HOH A 37 437 2 HOH HOH . H 7 HOH A 38 438 47 HOH HOH . H 7 HOH A 39 439 4 HOH HOH . H 7 HOH A 40 440 48 HOH HOH . H 7 HOH A 41 441 49 HOH HOH . H 7 HOH A 42 442 32 HOH HOH . H 7 HOH A 43 443 43 HOH HOH . H 7 HOH A 44 444 1 HOH HOH . H 7 HOH A 45 445 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 MK7 . . . B 2 10.564 -6.944 24.141 1 32.36 ? C4 MK7 301 A 1 HETATM 2 C C5 MK7 . . . B 2 13.915 -12.095 27.115 1 44.54 ? C5 MK7 301 A 1 HETATM 3 C C6 MK7 . . . B 2 16.199 -11.217 27.352 1 40.08 ? C6 MK7 301 A 1 HETATM 4 C C7 MK7 . . . B 2 11.481 -7.794 21.883 1 27.42 ? C7 MK7 301 A 1 HETATM 5 C C8 MK7 . . . B 2 13.412 -6.33 21.43 1 25.39 ? C8 MK7 301 A 1 HETATM 6 C C10 MK7 . . . B 2 13.158 -7.438 23.634 1 33.89 ? C10 MK7 301 A 1 HETATM 7 C C1 MK7 . . . B 2 12.042 -7.097 24.642 1 38.2 ? C1 MK7 301 A 1 HETATM 8 C C2 MK7 . . . B 2 13.71 -10.656 26.692 1 36.61 ? C2 MK7 301 A 1 HETATM 9 C C3 MK7 . . . B 2 16.116 -10.358 26.116 1 35.12 ? C3 MK7 301 A 1 HETATM 10 C C9 MK7 . . . B 2 14.696 -10.324 25.579 1 35.64 ? C9 MK7 301 A 1 HETATM 11 C C11 MK7 . . . B 2 13.628 -8.872 23.866 1 34.36 ? C11 MK7 301 A 1 HETATM 12 C C12 MK7 . . . B 2 10.334 -7.079 22.626 1 31.88 ? C12 MK7 301 A 1 HETATM 13 N N13 MK7 . . . B 2 15.344 -12.416 27.274 1 47.1 ? N13 MK7 301 A 1 HETATM 14 N N14 MK7 . . . B 2 14.383 -9.029 24.975 1 32.78 ? N14 MK7 301 A 1 HETATM 15 N N15 MK7 . . . B 2 9.941 -5.767 22.048 1 36.37 ? N15 MK7 301 A 1 HETATM 16 N N16 MK7 . . . B 2 12.763 -7.184 22.245 1 28.87 ? N16 MK7 301 A 1 HETATM 17 O O17 MK7 . . . B 2 9.686 -3.062 23.475 1 32.16 ? O17 MK7 301 A 1 HETATM 18 O O18 MK7 . . . B 2 14.302 -5.542 21.72 1 22.74 ? O18 MK7 301 A 1 HETATM 19 O O19 MK7 . . . B 2 13.233 -9.792 23.14 1 35.31 ? O19 MK7 301 A 1 HETATM 20 O O20 MK7 . . . B 2 11.718 -2.354 22.474 1 40.32 ? O20 MK7 301 A 1 HETATM 21 O O21 MK7 . . . B 2 9.967 -3.17 21.032 1 37.49 ? O21 MK7 301 A 1 HETATM 22 O O22 MK7 . . . B 2 11.01 -4.762 22.272 1 38.47 ? O22 MK7 301 A 1 HETATM 23 S S23 MK7 . . . B 2 10.589 -3.239 22.351 1 31.6 ? S23 MK7 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #